Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009429

Physical Location & Seq

Genomic Coordinates Forward (+)

46594953 .. 46606756

Gene Structure 11804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00319100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCCATCAACGCTTCCACCTCTTCCCCGGCTCTCTTCTCATCCAAATCCGACCATTCCTTGTGTTTTCGTCGGTCCGACCCACACCCCAATTTCCCAAAATTCGACCGTTGCAGCTTTCCTCGACATTACCCTCCAAGTCTGAGCAGCTATGCTACGAATGCTTCATTACTAAGACCCAAAGCCTCTCAGAATACAAGAGAGCCCATGCTTCCTCCTTACAATGTGCTCATCACCGGTTCAACCAAAGGTATTGGTTTTGCTCTAGCCAGAGAGTTCCTCAGAGCAGGAGATAACGTCGTGATTTGCTCTAGATCAGCTGAACGAGTTGAATCTGCTGTTCAGAGCCTTAGAGAAGATTTTGGCGAGCAGCGTGTGTGGGGTACTAAGTGTGATGTTAGGGAAGGGAAAGATGTGAAGGACTTAGTGGCCTTTGGACAAAAGAACCTGAAATACATTGATATATGGATTAATAATGCAGGATCAAATGCTTATAGTTATAAACCCTTGGCAGAGGCTTCAGATGAAGATCTTATTGAAGTTGTCACTACAAATACACTTGGTTTGATGATATGTTGCCGTGAGGCAATAAAGATGATGTTGGACCAGCCTCGAGGTGGTCATGTTTTCAACATCGATGGAGCTGGTTCTGATGGAAGACCAACCCCAAGTTTTGCTGCATATGGAGCAACAAAGCGTAGTGTGGTGCATTTGACAAAATCATTACAGGCAGAATTACAGATGCAAGATGTCAAACAAGTCATAGTGCATAACTTGTCGCCAGGGATGGTTACAACTGATCTTCTCATGTCTGGTGCAACTACGAAGCAGGCAAAGTTTTTCATCAATGTTCTGGCAGAACCAGCTGAAGTGGTTGCCGAGTATCTTGTTCCAAATATAAGATCCATCCCTACCAAGGGATCAATGAAGCCCACTTACATCCGTTTCCTAACAGGGATGAAAGCCTACTCCCAGATATTCTCAAGACTTGCTTTTGGTGCAAGAAGGAACAGATATTTGCTCGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0010304 GO:0015994 GO:0015996 GO:0016491 GO:0016614 GO:0016616 GO:0019439 GO:0019538 GO:0030163 GO:0033013 GO:0033015 GO:0034256 GO:0034641 GO:0042440 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Myb_DNA-binding adh_short

Protein Analysis

343

Amino Acids

37.94

Weight (kDa)

9.22

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	75 - 273	2.5e-08	SDR-like rossmann domain
adh_short	PF00106	76 - 271	8.2e-42	short chain dehydrogenase
KR	PF08659	76 - 184	2.6e-06	KR domain
adh_short_C2	PF13561	82 - 274	2.7e-30	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04900
fragaria_vesca	FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100
malus_domestica	MD02G1262200.v1.1
prunus_persica	Prupe.2G064200_v2.0.a1 Prupe.2G064200_v2.0.a1
pyrus_communis	pycom02g22420
rosa_chinensis	RchiOBHm_Chr1g0331471
rosa_laevigata	RLG00000029735
rosa_multiflora	Rmu_sc0001567.1_g000007 Rmu_sc0003791.1_g000011
rosa_roxburghii	Rroxscaffold_4G00319100
rosa_rugosa	Rorug01G0093100
rosa_samantha	Rh1AG118400 Rh1BG089100 Rh1CG113200 Rh1DG122400
rosa_wichuraiana	Rw1G009480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	501
AbsI	CCTCGAGG	1 cut(s)	612
AclWI	GGATC	3 cut(s)	490, 897, 928
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	101
AcuI	CTGAAG	2 cut(s)	504, 888
AfaI	GTAC	1 cut(s)	385
AfiI	CCNNNNNNNGG	3 cut(s)	617, 916, 917
AgeI	ACCGGT	1 cut(s)	236
AgsI	TTSAA	4 cut(s)	243, 332, 539, 631
AjnI	CCWGG	1 cut(s)	781
AluBI	AGCT	5 cut(s)	117, 150, 320, 644, 866
AluI	AGCT	5 cut(s)	117, 150, 320, 644, 866
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	3 cut(s)	490, 897, 928
Ama87I	CYCGRG	1 cut(s)	612
AoxI	GGCC	2 cut(s)	3, 429
ApeKI	GCWGC	4 cut(s)	114, 147, 370, 677
ApoI	RAATTY	1 cut(s)	101
AseI	ATTAAT	1 cut(s)	471
AsiGI	ACCGGT	1 cut(s)	236
AspS9I	GGNCC	2 cut(s)	75, 604
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	612
AvaII	GGWCC	2 cut(s)	75, 604
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	207
BarI	GAAGNNNNNNTAC	2 cut(s)	920, 952
BbsI	GAAGAC	1 cut(s)	664
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	4 cut(s)	126, 159, 382, 664
BccI	CCATC	5 cut(s)	14, 632, 647, 781, 914
BceAI	ACGGC	1 cut(s)	564
BciT130I	CCWGG	1 cut(s)	783
BcnI	CCSGG	1 cut(s)	29
BfaI	CTAG	2 cut(s)	266, 312
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	4 cut(s)	115, 148, 371, 678
BlsI	GCNGC	4 cut(s)	116, 149, 372, 679
Bme1390I	CCNGG	2 cut(s)	29, 783
Bme18I	GGWCC	2 cut(s)	75, 604
BmeT110I	CYCGRG	1 cut(s)	612
BmgT120I	GGNCC	2 cut(s)	75, 604
BmrFI	CCNGG	2 cut(s)	29, 783
BmsI	GCATC	1 cut(s)	732
BpiI	GAAGAC	1 cut(s)	664
BplI	GAGNNNNNCTC	2 cut(s)	264, 296
BpuEI	CTTGAG	1 cut(s)	967
BpuMI	CCSGG	1 cut(s)	29
Bsa29I	ATCGAT	1 cut(s)	636
BsaBI	GATNNNNATC	1 cut(s)	528
BsaJI	CCNNGG	4 cut(s)	27, 507, 782, 915
BsaWI	WCCGGW	1 cut(s)	236
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	3 cut(s)	617, 916, 917
Bse118I	RCCGGY	1 cut(s)	236
Bse8I	GATNNNNATC	1 cut(s)	528
BseBI	CCWGG	1 cut(s)	783
BseCI	ATCGAT	1 cut(s)	636
BseDI	CCNNGG	4 cut(s)	27, 507, 782, 915
BseGI	GGATG	5 cut(s)	41, 792, 906, 939, 963
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	3 cut(s)	617, 916, 917
BseMII	CTCAG	3 cut(s)	134, 203, 295
BseXI	GCAGC	4 cut(s)	126, 159, 382, 664
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	2 cut(s)	5, 431
BshTI	ACCGGT	1 cut(s)	236
BshVI	ATCGAT	1 cut(s)	636
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	612
BsiSI	CCGG	2 cut(s)	29, 237
BslI	CCNNNNNNNGG	3 cut(s)	617, 916, 917
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	2 cut(s)	5, 431
BsoBI	CYCGRG	1 cut(s)	612
Bsp1286I	GDGCHC	2 cut(s)	207, 231
Bsp143I	GATC	6 cut(s)	314, 482, 529, 799, 902, 920
BspANI	GGCC	2 cut(s)	5, 431
BspCNI	CTCAG	3 cut(s)	135, 202, 294
BspDI	ATCGAT	1 cut(s)	636
BspPI	GGATC	3 cut(s)	490, 897, 928
BsrFI	RCCGGY	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	4 cut(s)	27, 507, 782, 915
BssMI	GATC	6 cut(s)	314, 482, 529, 799, 902, 920
BssT1I	CCWWGG	2 cut(s)	507, 915
Bst2UI	CCWGG	1 cut(s)	783
Bst4CI	ACNGT	1 cut(s)	110
Bst6I	CTCTTC	2 cut(s)	28, 41
BstC8I	GCNNGC	2 cut(s)	368, 831
BstDEI	CTNAG	7 cut(s)	143, 173, 189, 281, 350, 387, 424
BstF5I	GGATG	5 cut(s)	41, 792, 906, 939, 963
BstKTI	GATC	6 cut(s)	317, 485, 532, 802, 905, 923
BstMBI	GATC	6 cut(s)	314, 482, 529, 799, 902, 920
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 161, 686, 863, 998
BstNI	CCWGG	1 cut(s)	783
BstSCI	CCNGG	2 cut(s)	27, 781
BstV1I	GCAGC	4 cut(s)	126, 159, 382, 664
BstV2I	GAAGAC	1 cut(s)	664
BstX2I	RGATCY	2 cut(s)	529, 902
BstYI	RGATCY	2 cut(s)	529, 902
Bsu15I	ATCGAT	1 cut(s)	636
BsuRI	GGCC	2 cut(s)	5, 431
BsuTUI	ATCGAT	1 cut(s)	636
BtsCI	GGATG	5 cut(s)	41, 792, 906, 939, 963
Cac8I	GCNNGC	2 cut(s)	368, 831
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	75, 604
ClaI	ATCGAT	1 cut(s)	636
CpoI	CGGWCCG	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	384
CspAI	ACCGGT	1 cut(s)	236
CspI	CGGWCCG	1 cut(s)	75
CviAII	CATG	3 cut(s)	208, 623, 808
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	7 cut(s)	143, 173, 189, 281, 350, 387, 424
DpnI	GATC	6 cut(s)	316, 484, 531, 801, 904, 922
DpnII	GATC	6 cut(s)	314, 482, 529, 799, 902, 920
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	28, 41
EarI	CTCTTC	2 cut(s)	28, 41
Eco130I	CCWWGG	2 cut(s)	507, 915
Eco24I	GRGCYC	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	75, 604
Eco57I	CTGAAG	2 cut(s)	504, 888
Eco88I	CYCGRG	1 cut(s)	612
EcoRII	CCWGG	1 cut(s)	781
EcoT14I	CCWWGG	2 cut(s)	507, 915
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	2 cut(s)	507, 915
FaeI	CATG	3 cut(s)	211, 626, 811
FalI	AAGNNNNNCTT	2 cut(s)	976, 1008
FatI	CATG	3 cut(s)	207, 622, 807
FauNDI	CATATG	1 cut(s)	682
Fnu4HI	GCNGC	4 cut(s)	115, 148, 371, 678
FokI	GGATG	5 cut(s)	28, 799, 893, 926, 970
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	4 cut(s)	115, 148, 371, 678
FspBI	CTAG	2 cut(s)	266, 312
GluI	GCNGC	4 cut(s)	115, 148, 371, 678
HaeIII	GGCC	2 cut(s)	5, 431
HapII	CCGG	2 cut(s)	29, 237
Hin1II	CATG	3 cut(s)	211, 626, 811
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	2 cut(s)	29, 237
HphI	GGTGA	1 cut(s)	226
Hpy188I	TCNGA	8 cut(s)	52, 79, 144, 192, 284, 345, 523, 652
Hpy188III	TCNNGA	3 cut(s)	301, 312, 984
Hpy99I	CGWCG	2 cut(s)	75, 302
HpyAV	CCTTC	3 cut(s)	398, 412, 999
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	8 cut(s)	114, 479, 680, 709, 745, 769, 818, 1001
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 161, 686, 863, 998
HpyF3I	CTNAG	7 cut(s)	143, 173, 189, 281, 350, 387, 424
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	211, 626, 811
Kzo9I	GATC	6 cut(s)	314, 482, 529, 799, 902, 920
LmnI	GCTCC	2 cut(s)	641, 686
Lsp1109I	GCAGC	4 cut(s)	126, 159, 382, 664
LweI	GCATC	1 cut(s)	732
MaeI	CTAG	2 cut(s)	266, 312
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	544, 790
MalI	GATC	6 cut(s)	316, 484, 531, 801, 904, 922
MboI	GATC	6 cut(s)	314, 482, 529, 799, 902, 920
MboII	GAAGA	6 cut(s)	15, 28, 368, 539, 669, 794
MflI	RGATCY	2 cut(s)	529, 902
MhlI	GDGCHC	2 cut(s)	207, 231
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	91, 101, 734
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	3 cut(s)	75, 102, 582
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	471, 1030
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	320, 866
MspI	CCGG	2 cut(s)	29, 237
MspR9I	CCNGG	2 cut(s)	29, 783
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	783
MwoI	GCNNNNNNNGC	5 cut(s)	11, 161, 686, 863, 998
NciI	CCSGG	1 cut(s)	29
NdeI	CATATG	1 cut(s)	682
NdeII	GATC	6 cut(s)	314, 482, 529, 799, 902, 920
NlaIII	CATG	3 cut(s)	211, 626, 811
NmeAIII	GCCGAG	1 cut(s)	904
NmuCI	GTSAC	1 cut(s)	544
PaeR7I	CTCGAG	1 cut(s)	612
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	332
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	4 cut(s)	116, 149, 372, 679
PshBI	ATTAAT	1 cut(s)	471
PsiI	TTATAA	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	781
PspGI	CCWGG	1 cut(s)	781
PspPI	GGNCC	2 cut(s)	75, 604
PspXI	VCTCGAGB	1 cut(s)	612
PsrI	GAACNNNNNNTAC	2 cut(s)	437, 469
PsuI	RGATCY	2 cut(s)	529, 902
PvuII	CAGCTG	2 cut(s)	320, 866
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
Rsr2I	CGGWCCG	1 cut(s)	75
RsrII	CGGWCCG	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	471, 1030
SatI	GCNGC	4 cut(s)	115, 148, 371, 678
Sau3AI	GATC	6 cut(s)	314, 482, 529, 799, 902, 920
Sau96I	GGNCC	2 cut(s)	75, 604
ScrFI	CCNGG	2 cut(s)	29, 783
SduI	GDGCHC	2 cut(s)	207, 231
SfaNI	GCATC	1 cut(s)	732
Sfr274I	CTCGAG	1 cut(s)	612
SinI	GGWCC	2 cut(s)	75, 604
SlaI	CTCGAG	1 cut(s)	612
SmlI	CTYRAG	2 cut(s)	612, 982
SmoI	CTYRAG	2 cut(s)	612, 982
Sse9I	AATT	3 cut(s)	91, 101, 734
SspMI	CTAG	2 cut(s)	266, 312
StyD4I	CCNGG	2 cut(s)	27, 781
StyI	CCWWGG	2 cut(s)	507, 915
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	5 cut(s)	105, 124, 613, 636, 1023
TaqII	GACCGA	1 cut(s)	63
TasI	AATT	3 cut(s)	91, 101, 734
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	2 cut(s)	471, 1030
Tru9I	TTAA	2 cut(s)	471, 1030
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	4 cut(s)	114, 147, 370, 677
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	5 cut(s)	156, 540, 832, 941, 974
TspGWI	ACGGA	1 cut(s)	932
VpaK11BI	GGWCC	2 cut(s)	75, 604
VspI	ATTAAT	1 cut(s)	471
XapI	RAATTY	1 cut(s)	101
XbaI	TCTAGA	1 cut(s)	311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	614
XhoI	CTCGAG	1 cut(s)	612
XspI	CTAG	2 cut(s)	266, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.