Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003791.1

Orthogroup ID

OG0009429

Physical Location & Seq

Genomic Coordinates Forward (+)

57562 .. 60967

Gene Structure 3406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003791.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atggccatcaacgcttccacctcttcgccagctctcttctcatccaaatccgaccattccttgtgttttcgtcggtccgacccacaccccaatttccccaaatccgaccgttgcagctttcctcgacattacccaccaagactgagctgctacgctacgaatgcttcatcactaagacccaaagcctctcagaatacaagagagcccatgcttcctccttacaatgtgctcatcactggttcaaccaaaggtattggttttgctctagccaaagagttcctcagagcaggagataacgtcgtgatttgctctagatcagctgaacgagttgaatctgctgttcagagccttagagaagattttggcgagcagcgtgtgtggggtactaaatgtgatgttagggaagggaaagatgtgaaggacttagtggcatttgcacaaaagaacctgaaatacattgatatatggattaataatgcaggatcaaatgcttatagttataaacccctggcagaggcttcagatgaagatcttattgaagttgtcaccacaaatacacttggtttgatgatatgttgccgtgaggcaataaagatgatgttggaccagcctcgaggtggtcatgttttcaacatcgatggagctggttctgatggaagaccaaccccaaggtgctacatcagtttcccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0010304 GO:0015994 GO:0015996 GO:0016491 GO:0016614 GO:0016616 GO:0019439 GO:0019538 GO:0030163 GO:0033013 GO:0033015 GO:0034256 GO:0034641 GO:0042440 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Myb_DNA-binding adh_short

Protein Analysis

230

Amino Acids

25.43

Weight (kDa)

8.6

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04900
fragaria_vesca	FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100
malus_domestica	MD02G1262200.v1.1
prunus_persica	Prupe.2G064200_v2.0.a1 Prupe.2G064200_v2.0.a1
pyrus_communis	pycom02g22420
rosa_chinensis	RchiOBHm_Chr1g0331471
rosa_laevigata	RLG00000029735
rosa_multiflora	Rmu_sc0001567.1_g000007 Rmu_sc0003791.1_g000011
rosa_roxburghii	Rroxscaffold_4G00319100
rosa_rugosa	Rorug01G0093100
rosa_samantha	Rh1AG118400 Rh1BG089100 Rh1CG113200 Rh1DG122400
rosa_wichuraiana	Rw1G009480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	501
AbsI	CCTCGAGG	1 cut(s)	612
AclWI	GGATC	1 cut(s)	490
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	1 cut(s)	385
AfiI	CCNNNNNNNGG	2 cut(s)	514, 617
AgsI	TTSAA	4 cut(s)	243, 332, 539, 631
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	5 cut(s)	32, 117, 147, 320, 644
AluI	AGCT	5 cut(s)	32, 117, 147, 320, 644
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	490
Ama87I	CYCGRG	1 cut(s)	612
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	114, 147, 370
AseI	ATTAAT	1 cut(s)	471
AspS9I	GGNCC	2 cut(s)	75, 604
AsuHPI	GGTGA	1 cut(s)	538
AvaI	CYCGRG	1 cut(s)	612
AvaII	GGWCC	2 cut(s)	75, 604
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	664
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	126, 134, 382
BccI	CCATC	3 cut(s)	14, 632, 647
BceAI	ACGGC	1 cut(s)	564
BciT130I	CCWGG	1 cut(s)	509
BfaI	CTAG	2 cut(s)	266, 312
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	3 cut(s)	115, 148, 371
BlsI	GCNGC	3 cut(s)	116, 149, 372
Bme1390I	CCNGG	1 cut(s)	509
Bme18I	GGWCC	2 cut(s)	75, 604
BmeT110I	CYCGRG	1 cut(s)	612
BmgT120I	GGNCC	2 cut(s)	75, 604
BmrFI	CCNGG	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	664
Bsa29I	ATCGAT	1 cut(s)	636
BsaBI	GATNNNNATC	1 cut(s)	528
BsaJI	CCNNGG	2 cut(s)	507, 668
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	514, 617
Bse1I	ACTGG	1 cut(s)	241
Bse8I	GATNNNNATC	1 cut(s)	528
BseBI	CCWGG	1 cut(s)	509
BseCI	ATCGAT	1 cut(s)	636
BseDI	CCNNGG	2 cut(s)	507, 668
BseGI	GGATG	1 cut(s)	41
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	2 cut(s)	514, 617
BseMII	CTCAG	3 cut(s)	134, 203, 295
BseNI	ACTGG	1 cut(s)	241
BseXI	GCAGC	3 cut(s)	126, 134, 382
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	636
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	612
BslI	CCNNNNNNNGG	2 cut(s)	514, 617
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	612
Bsp1286I	GDGCHC	2 cut(s)	207, 231
Bsp143I	GATC	3 cut(s)	314, 482, 529
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	135, 202, 294
BspDI	ATCGAT	1 cut(s)	636
BspPI	GGATC	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	507, 668
BssMI	GATC	3 cut(s)	314, 482, 529
BssT1I	CCWWGG	1 cut(s)	668
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	1 cut(s)	110
Bst6I	CTCTTC	2 cut(s)	28, 41
BstC8I	GCNNGC	2 cut(s)	30, 368
BstDEI	CTNAG	7 cut(s)	143, 173, 189, 281, 350, 424, 690
BstENI	CCTNNNNNAGG	1 cut(s)	512
BstF5I	GGATG	1 cut(s)	41
BstKTI	GATC	3 cut(s)	317, 485, 532
BstMBI	GATC	3 cut(s)	314, 482, 529
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 161
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstV1I	GCAGC	3 cut(s)	126, 134, 382
BstV2I	GAAGAC	1 cut(s)	664
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
Bsu15I	ATCGAT	1 cut(s)	636
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	636
BtsCI	GGATG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	2 cut(s)	30, 368
Cfr13I	GGNCC	2 cut(s)	75, 604
ClaI	ATCGAT	1 cut(s)	636
CpoI	CGGWCCG	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	384
CspI	CGGWCCG	1 cut(s)	75
CviAII	CATG	2 cut(s)	208, 623
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	7 cut(s)	143, 173, 189, 281, 350, 424, 690
DpnI	GATC	3 cut(s)	316, 484, 531
DpnII	GATC	3 cut(s)	314, 482, 529
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	28, 41
EarI	CTCTTC	2 cut(s)	28, 41
Eco130I	CCWWGG	1 cut(s)	668
Eco24I	GRGCYC	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	75, 604
Eco57I	CTGAAG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	612
EcoNI	CCTNNNNNAGG	1 cut(s)	512
EcoRII	CCWGG	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	668
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	668
FaeI	CATG	2 cut(s)	211, 626
FaiI	YATR	7 cut(s)	209, 464, 466, 495, 501, 574, 624
FatI	CATG	2 cut(s)	207, 622
Fnu4HI	GCNGC	3 cut(s)	115, 148, 371
FokI	GGATG	1 cut(s)	28
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	3 cut(s)	115, 148, 371
FspBI	CTAG	2 cut(s)	266, 312
GluI	GCNGC	3 cut(s)	115, 148, 371
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	211, 626
HinfI	GANTC	1 cut(s)	332
HphI	GGTGA	1 cut(s)	538
Hpy188I	TCNGA	8 cut(s)	52, 79, 106, 192, 284, 345, 523, 652
Hpy188III	TCNNGA	2 cut(s)	301, 312
Hpy99I	CGWCG	2 cut(s)	75, 302
HpyAV	CCTTC	2 cut(s)	398, 412
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	114, 437, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 161
HpyF3I	CTNAG	7 cut(s)	143, 173, 189, 281, 350, 424, 690
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	211, 626
Kzo9I	GATC	3 cut(s)	314, 482, 529
LmnI	GCTCC	1 cut(s)	641
LpnPI	CCDG	9 cut(s)	42, 222, 273, 461, 465, 494, 521, 620, 630
Lsp1109I	GCAGC	3 cut(s)	126, 134, 382
MaeI	CTAG	2 cut(s)	266, 312
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	3 cut(s)	316, 484, 531
MboI	GATC	3 cut(s)	314, 482, 529
MboII	GAAGA	5 cut(s)	15, 28, 368, 539, 669
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	2 cut(s)	207, 231
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	91
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	4 cut(s)	75, 102, 129, 582
MnlI	CCTC	9 cut(s)	31, 132, 196, 225, 290, 508, 577, 608, 621
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	471
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	320
MspR9I	CCNGG	1 cut(s)	509
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	2 cut(s)	11, 161
NdeII	GATC	3 cut(s)	314, 482, 529
NlaIII	CATG	2 cut(s)	211, 626
NmuCI	GTSAC	1 cut(s)	544
PaeR7I	CTCGAG	1 cut(s)	612
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	3 cut(s)	116, 149, 372
PshBI	ATTAAT	1 cut(s)	471
PsiI	TTATAA	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspPI	GGNCC	2 cut(s)	75, 604
PspXI	VCTCGAGB	1 cut(s)	612
PsrI	GAACNNNNNNTAC	2 cut(s)	437, 469
PsuI	RGATCY	1 cut(s)	529
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
Rsr2I	CGGWCCG	1 cut(s)	75
RsrII	CGGWCCG	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	3 cut(s)	115, 148, 371
Sau3AI	GATC	3 cut(s)	314, 482, 529
Sau96I	GGNCC	2 cut(s)	75, 604
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	2 cut(s)	207, 231
Sfr274I	CTCGAG	1 cut(s)	612
SinI	GGWCC	2 cut(s)	75, 604
SlaI	CTCGAG	1 cut(s)	612
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
Sse9I	AATT	1 cut(s)	91
SspMI	CTAG	2 cut(s)	266, 312
StyD4I	CCNGG	1 cut(s)	507
StyI	CCWWGG	1 cut(s)	668
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	3 cut(s)	124, 613, 636
TaqII	GACCGA	1 cut(s)	63
TasI	AATT	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	3 cut(s)	114, 147, 370
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	2 cut(s)	156, 540
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	2 cut(s)	75, 604
VspI	ATTAAT	1 cut(s)	471
XagI	CCTNNNNNAGG	1 cut(s)	512
XbaI	TCTAGA	1 cut(s)	311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	614
XhoI	CTCGAG	1 cut(s)	612
XspI	CTAG	2 cut(s)	266, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.