Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009429

Physical Location & Seq

Genomic Coordinates Forward (+)

31652642 .. 31661793

Gene Structure 9152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1262200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCGGTTAACAATTGTACCTGCGCATCTAGTCCACCTCTGCTCTCCTCCAAACCCCATCACTCTAACCCTCCTCGATTCCACCCGCACCCCAATTTCCCTAAATTCGACCGTTGCAGTTTTCCGACCGTTAGTTGGCGCCAAAACCTTGGCAGTCTCAGTACCTCCGACAGCCGGCTTGTAAGAGCCTCCGCCTCCGCCTCCGCCTCTGACTCCGGCTCCGACTCTGAGAGCAGAGAGCCCATGCTTCCTCCTTACAATGTGCTCATCACCGGCTCAACGAAAGGTATAGGATATGCTCTAGCCAAAGAGTTTCTAAAAGCAGGGGATAACGTCGTAATTTGCTCAAGATCAGCTGAACGTGTTAATGCTGCTGTTCAGAGCCTTAGGCAGGATTTTGGGGAGCAGCATGTGTGGGGTACTAACTGTGATGTTAGAGAAGGGCAGGATGTGAAAGACTTAGTTGCTTTTGCACAAAAAAACCTTAAGTACATCGATATATGGATTAATAATGCAGGATCAAATGCGTATAGCTATAAACCACTGGCAGAGGCTTCGGATGAAGACCTGATTGAAGTCGTCACTACGAATACACTTGGTTTGATGTTATGTTGCCGTGAGGCAATAAAAATGATGTTCAACCAGCCTCGAGGTGGACATATTTTCAACATTGATGGAGCTGGTTCTGATGGAAGACCAACCCCAAGGTTTGCAGCATACGGGGCAACAAAGCGTAGCGTGGTGCATTTAACAAAATCATTGCAGGCAGAACTGCAGATGCAGGATGTCAAAAATGTTGCAGTGCATAACCTCTCGCCAGGAATGGTTACAACTGATCTTCTCATGTCTGGTGCAACTACGAAGCAGGCAAAGTTTTTCATTAATGTTTTGGCAGAACCACCTGAAGTGGTCGCTGAGTACCTGGTTCCAAACATAAGATCCGTCCCTGCCAATGGGTCAATGAAGCCTACATACATTCGTTTCCTAACTGGGATAAAAGCCTACTCCCAGATATTCTCAAGATTTGCTTTTGGAGCAAGAAGAAACAGGTATGTACTTGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0010304 GO:0015994 GO:0015996 GO:0016491 GO:0016614 GO:0016616 GO:0019439 GO:0019538 GO:0030163 GO:0033013 GO:0033015 GO:0034256 GO:0034641 GO:0042440 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Myb_DNA-binding adh_short

Protein Analysis

356

Amino Acids

38.9

Weight (kDa)

8.89

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	87 - 284	3.4e-08	SDR-like rossmann domain
adh_short	PF00106	88 - 283	1.1e-43	short chain dehydrogenase
KR	PF08659	88 - 196	6.7e-07	KR domain
adh_short_C2	PF13561	94 - 286	4.8e-32	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04900
fragaria_vesca	FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100
malus_domestica	MD02G1262200.v1.1
prunus_persica	Prupe.2G064200_v2.0.a1 Prupe.2G064200_v2.0.a1
pyrus_communis	pycom02g22420
rosa_chinensis	RchiOBHm_Chr1g0331471
rosa_laevigata	RLG00000029735
rosa_multiflora	Rmu_sc0001567.1_g000007 Rmu_sc0003791.1_g000011
rosa_roxburghii	Rroxscaffold_4G00319100
rosa_rugosa	Rorug01G0093100
rosa_samantha	Rh1AG118400 Rh1BG089100 Rh1CG113200 Rh1DG122400
rosa_wichuraiana	Rw1G009480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	648
Acc16I	TGCGCA	1 cut(s)	25
Acc36I	ACCTGC	1 cut(s)	29
AccB1I	GGYRCC	1 cut(s)	138
AciI	CCGC	5 cut(s)	5, 86, 192, 198, 204
AclWI	GGATC	2 cut(s)	526, 933
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	924
AcyI	GRCGYC	1 cut(s)	139
AfaI	GTAC	6 cut(s)	19, 163, 421, 491, 920, 1056
AfiI	CCNNNNNNNGG	5 cut(s)	135, 174, 391, 653, 953
AflII	CTTAAG	1 cut(s)	485
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	4 cut(s)	575, 640, 667, 1061
AjnI	CCWGG	2 cut(s)	817, 921
AluBI	AGCT	3 cut(s)	356, 534, 680
AluI	AGCT	3 cut(s)	356, 534, 680
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	2 cut(s)	526, 933
Ama87I	CYCGRG	1 cut(s)	648
ApeKI	GCWGC	3 cut(s)	371, 406, 713
ApoI	RAATTY	1 cut(s)	104
AseI	ATTAAT	2 cut(s)	507, 882
AspLEI	GCGC	2 cut(s)	26, 141
AsuHPI	GGTGA	1 cut(s)	262
AvaI	CYCGRG	1 cut(s)	648
AxyI	CCTNAGG	1 cut(s)	386
BaeI	ACNNNNGTAYC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	243
BarI	GAAGNNNNNNTAC	2 cut(s)	956, 988
BbsI	GAAGAC	2 cut(s)	570, 700
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	3 cut(s)	358, 418, 725
BccI	CCATC	3 cut(s)	66, 668, 683
BceAI	ACGGC	1 cut(s)	600
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciT130I	CCWGG	2 cut(s)	819, 923
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	2 cut(s)	30, 302
BfmI	CTRYAG	1 cut(s)	773
BfoI	RGCGCY	1 cut(s)	142
BfrI	CTTAAG	1 cut(s)	485
BfuAI	ACCTGC	1 cut(s)	29
BisI	GCNGC	3 cut(s)	372, 407, 714
BlsI	GCNGC	3 cut(s)	373, 408, 715
Bme1390I	CCNGG	2 cut(s)	819, 923
BmeT110I	CYCGRG	1 cut(s)	648
BmiI	GGNNCC	3 cut(s)	140, 220, 927
BmrFI	CCNGG	2 cut(s)	819, 923
BmrI	ACTGGG	1 cut(s)	999
BmsI	GCATC	2 cut(s)	35, 768
BmuI	ACTGGG	1 cut(s)	999
BpiI	GAAGAC	2 cut(s)	570, 700
BpuEI	CTTGAG	2 cut(s)	331, 1003
Bsa29I	ATCGAT	1 cut(s)	495
BsaHI	GRCGYC	1 cut(s)	139
BsaJI	CCNNGG	2 cut(s)	148, 704
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	5 cut(s)	135, 174, 391, 653, 953
Bse118I	RCCGGY	2 cut(s)	174, 272
Bse1I	ACTGG	2 cut(s)	549, 994
Bse21I	CCTNAGG	1 cut(s)	386
Bse3DI	GCAATG	1 cut(s)	758
BseBI	CCWGG	2 cut(s)	819, 923
BseCI	ATCGAT	1 cut(s)	495
BseDI	CCNNGG	2 cut(s)	148, 704
BseGI	GGATG	3 cut(s)	454, 565, 790
BseLI	CCNNNNNNNGG	5 cut(s)	135, 174, 391, 653, 953
BseMI	GCAATG	1 cut(s)	758
BseMII	CTCAG	3 cut(s)	172, 219, 906
BseNI	ACTGG	2 cut(s)	549, 994
BseRI	GAGGAG	2 cut(s)	37, 63
BseXI	GCAGC	3 cut(s)	358, 418, 725
Bsh1285I	CGRYCG	2 cut(s)	112, 129
BshNI	GGYRCC	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	495
BsiEI	CGRYCG	2 cut(s)	112, 129
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	648
BsiSI	CCGG	3 cut(s)	175, 216, 273
BslFI	GGGAC	1 cut(s)	929
BslI	CCNNNNNNNGG	5 cut(s)	135, 174, 391, 653, 953
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	929
BsoBI	CYCGRG	1 cut(s)	648
Bsp1286I	GDGCHC	2 cut(s)	243, 267
Bsp143I	GATC	4 cut(s)	350, 518, 835, 938
BspACI	CCGC	5 cut(s)	5, 86, 192, 198, 204
BspCNI	CTCAG	3 cut(s)	171, 220, 907
BspDI	ATCGAT	1 cut(s)	495
BspLI	GGNNCC	3 cut(s)	140, 220, 927
BspMAI	CTGCAG	1 cut(s)	777
BspMI	ACCTGC	1 cut(s)	29
BspPI	GGATC	2 cut(s)	526, 933
BspT107I	GGYRCC	1 cut(s)	138
BspTI	CTTAAG	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	758
BsrFI	RCCGGY	2 cut(s)	174, 272
BsrI	ACTGG	2 cut(s)	549, 994
BssAI	RCCGGY	2 cut(s)	174, 272
BssECI	CCNNGG	2 cut(s)	148, 704
BssMI	GATC	4 cut(s)	350, 518, 835, 938
BssNI	GRCGYC	1 cut(s)	139
BssT1I	CCWWGG	2 cut(s)	148, 704
Bst2UI	CCWGG	2 cut(s)	819, 923
Bst4CI	ACNGT	3 cut(s)	113, 130, 428
BstACI	GRCGYC	1 cut(s)	139
BstAFI	CTTAAG	1 cut(s)	485
BstC8I	GCNNGC	3 cut(s)	176, 765, 867
BstDEI	CTNAG	5 cut(s)	158, 228, 386, 460, 915
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	3 cut(s)	454, 565, 790
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	2 cut(s)	26, 141
BstKTI	GATC	4 cut(s)	353, 521, 838, 941
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	4 cut(s)	350, 518, 835, 938
BstMCI	CGRYCG	2 cut(s)	112, 129
BstMWI	GCNNNNNNNGC	2 cut(s)	722, 1034
BstNI	CCWGG	2 cut(s)	819, 923
BstNSI	RCATGY	1 cut(s)	413
BstSCI	CCNGG	2 cut(s)	817, 921
BstSFI	CTRYAG	1 cut(s)	773
BstV1I	GCAGC	3 cut(s)	358, 418, 725
BstV2I	GAAGAC	2 cut(s)	570, 700
BstX2I	RGATCY	1 cut(s)	938
BstXI	CCANNNNNNTGG	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	938
Bsu15I	ATCGAT	1 cut(s)	495
Bsu36I	CCTNAGG	1 cut(s)	386
BsuTUI	ATCGAT	1 cut(s)	495
BtsCI	GGATG	3 cut(s)	454, 565, 790
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	2 cut(s)	542, 807
BveI	ACCTGC	1 cut(s)	29
Cac8I	GCNNGC	3 cut(s)	176, 765, 867
CfoI	GCGC	2 cut(s)	26, 141
Cfr10I	RCCGGY	2 cut(s)	174, 272
ClaI	ATCGAT	1 cut(s)	495
CsiI	ACCWGGT	1 cut(s)	921
Csp6I	GTAC	6 cut(s)	18, 162, 420, 490, 919, 1055
CviAII	CATG	3 cut(s)	244, 410, 844
CviQI	GTAC	6 cut(s)	18, 162, 420, 490, 919, 1055
DdeI	CTNAG	5 cut(s)	158, 228, 386, 460, 915
DinI	GGCGCC	1 cut(s)	140
DpnI	GATC	4 cut(s)	352, 520, 837, 940
DpnII	GATC	4 cut(s)	350, 518, 835, 938
EciI	GGCGGA	3 cut(s)	181, 187, 193
Eco130I	CCWWGG	2 cut(s)	148, 704
Eco24I	GRGCYC	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	924
Eco81I	CCTNAGG	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	648
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoRII	CCWGG	2 cut(s)	817, 921
EcoT14I	CCWWGG	2 cut(s)	148, 704
EcoT38I	GRGCYC	1 cut(s)	243
EgeI	GGCGCC	1 cut(s)	140
EheI	GGCGCC	1 cut(s)	140
ErhI	CCWWGG	2 cut(s)	148, 704
FaeI	CATG	3 cut(s)	247, 413, 847
FalI	AAGNNNNNCTT	2 cut(s)	1012, 1044
FaqI	GGGAC	1 cut(s)	929
FatI	CATG	3 cut(s)	243, 409, 843
FauI	CCCGC	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	372, 407, 714
FokI	GGATG	3 cut(s)	461, 572, 797
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	3 cut(s)	372, 407, 714
FspBI	CTAG	2 cut(s)	30, 302
FspI	TGCGCA	1 cut(s)	25
GlaI	GCGC	2 cut(s)	25, 140
GluI	GCNGC	3 cut(s)	372, 407, 714
HaeII	RGCGCY	1 cut(s)	142
HapII	CCGG	3 cut(s)	175, 216, 273
HhaI	GCGC	2 cut(s)	26, 141
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	3 cut(s)	247, 413, 847
Hin6I	GCGC	2 cut(s)	24, 139
HinP1I	GCGC	2 cut(s)	24, 139
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	3 cut(s)	78, 212, 224
HpaI	GTTAAC	1 cut(s)	10
HpaII	CCGG	3 cut(s)	175, 216, 273
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	3 cut(s)	10, 35, 656
Hpy188I	TCNGA	8 cut(s)	126, 169, 211, 223, 229, 381, 559, 688
Hpy188III	TCNNGA	2 cut(s)	348, 1020
Hpy8I	GTNNAC	3 cut(s)	10, 35, 656
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	3 cut(s)	113, 130, 428
HpyCH4IV	ACGT	2 cut(s)	333, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	722, 1034
HpyF3I	CTNAG	5 cut(s)	158, 228, 386, 460, 915
HpySE526I	ACGT	2 cut(s)	333, 361
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	3 cut(s)	247, 413, 847
HspAI	GCGC	2 cut(s)	24, 139
KasI	GGCGCC	1 cut(s)	138
KroI	GCCGGC	1 cut(s)	174
KroNI	GCCGGC	1 cut(s)	176
KspAI	GTTAAC	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	350, 518, 835, 938
LmnI	GCTCC	4 cut(s)	224, 403, 677, 1034
Lsp1109I	GCAGC	3 cut(s)	358, 418, 725
LweI	GCATC	2 cut(s)	35, 768
MabI	ACCWGGT	1 cut(s)	921
MaeI	CTAG	2 cut(s)	30, 302
MaeII	ACGT	2 cut(s)	333, 361
MaeIII	GTNAC	2 cut(s)	580, 826
MalI	GATC	4 cut(s)	352, 520, 837, 940
MboI	GATC	4 cut(s)	350, 518, 835, 938
MboII	GAAGA	4 cut(s)	575, 705, 830, 1053
MfeI	CAATTG	1 cut(s)	13
MflI	RGATCY	1 cut(s)	938
MhlI	GDGCHC	2 cut(s)	243, 267
MluCI	AATT	4 cut(s)	13, 94, 104, 339
Mly113I	GGCGCC	1 cut(s)	139
MlyI	GAGTC	2 cut(s)	206, 218
MmeI	TCCRAC	3 cut(s)	149, 192, 246
MroNI	GCCGGC	1 cut(s)	174
MseI	TTAA	6 cut(s)	9, 366, 486, 507, 749, 882
MspA1I	CMGCKG	1 cut(s)	356
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	3 cut(s)	175, 216, 273
MspR9I	CCNGG	2 cut(s)	819, 923
MunI	CAATTG	1 cut(s)	13
MvaI	CCWGG	2 cut(s)	819, 923
MwoI	GCNNNNNNNGC	2 cut(s)	722, 1034
NaeI	GCCGGC	1 cut(s)	176
NarI	GGCGCC	1 cut(s)	139
NdeII	GATC	4 cut(s)	350, 518, 835, 938
NgoMIV	GCCGGC	1 cut(s)	174
NlaIII	CATG	3 cut(s)	247, 413, 847
NlaIV	GGNNCC	3 cut(s)	140, 220, 927
NmuCI	GTSAC	1 cut(s)	580
NsbI	TGCGCA	1 cut(s)	25
NspI	RCATGY	1 cut(s)	413
PaeR7I	CTCGAG	1 cut(s)	648
PdiI	GCCGGC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	78
PkrI	GCNGC	3 cut(s)	373, 408, 715
PleI	GAGTC	2 cut(s)	206, 218
PluTI	GGCGCC	1 cut(s)	142
PpsI	GAGTC	2 cut(s)	206, 218
PshBI	ATTAAT	2 cut(s)	507, 882
Psp6I	CCWGG	2 cut(s)	817, 921
PspGI	CCWGG	2 cut(s)	817, 921
PspN4I	GGNNCC	3 cut(s)	140, 220, 927
PspXI	VCTCGAGB	1 cut(s)	648
PstI	CTGCAG	1 cut(s)	777
PsuI	RGATCY	1 cut(s)	938
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	6 cut(s)	19, 163, 421, 491, 920, 1056
RsaNI	GTAC	6 cut(s)	18, 162, 420, 490, 919, 1055
SaqAI	TTAA	6 cut(s)	9, 366, 486, 507, 749, 882
SatI	GCNGC	3 cut(s)	372, 407, 714
Sau3AI	GATC	4 cut(s)	350, 518, 835, 938
SchI	GAGTC	2 cut(s)	206, 218
ScrFI	CCNGG	2 cut(s)	819, 923
SduI	GDGCHC	2 cut(s)	243, 267
SexAI	ACCWGGT	1 cut(s)	921
SfaNI	GCATC	2 cut(s)	35, 768
SfcI	CTRYAG	1 cut(s)	773
SfoI	GGCGCC	1 cut(s)	140
Sfr274I	CTCGAG	1 cut(s)	648
SlaI	CTCGAG	1 cut(s)	648
SmlI	CTYRAG	4 cut(s)	346, 485, 648, 1018
SmoI	CTYRAG	4 cut(s)	346, 485, 648, 1018
Sse9I	AATT	4 cut(s)	13, 94, 104, 339
SsiI	CCGC	5 cut(s)	5, 86, 192, 198, 204
SspDI	GGCGCC	1 cut(s)	138
SspMI	CTAG	2 cut(s)	30, 302
StyD4I	CCNGG	2 cut(s)	817, 921
StyI	CCWWGG	2 cut(s)	148, 704
TaaI	ACNGT	3 cut(s)	113, 130, 428
TaiI	ACGT	2 cut(s)	336, 364
TaqI	TCGA	4 cut(s)	76, 108, 495, 649
TasI	AATT	4 cut(s)	13, 94, 104, 339
TatI	WGTACW	2 cut(s)	489, 1054
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	6 cut(s)	9, 366, 486, 507, 749, 882
Tru9I	TTAA	6 cut(s)	9, 366, 486, 507, 749, 882
TscAI	CASTG	2 cut(s)	549, 807
TseFI	GTSAC	1 cut(s)	580
TseI	GCWGC	3 cut(s)	371, 406, 713
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	3 cut(s)	576, 868, 977
TspGWI	ACGGA	1 cut(s)	931
TspRI	CASTG	2 cut(s)	549, 807
Vha464I	CTTAAG	1 cut(s)	485
VspI	ATTAAT	2 cut(s)	507, 882
XagI	CCTNNNNNAGG	1 cut(s)	389
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	1 cut(s)	413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	650
XhoI	CTCGAG	1 cut(s)	648
XspI	CTAG	2 cut(s)	30, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.