Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016664

Physical Location & Seq

Genomic Coordinates Forward (+)

1590036 .. 1590861

Gene Structure 826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05365.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGCTAATGTTGTGGAGCTAAAAGTGAATTTGCATTGTGATGAATGCATCAGGAAAATACTTAAAGCCATCAAGAAAATTGAAGATATAGAAGCATACGATGTGGACACACAGCTCAACAAAGTGACAGTCACAGGGAATGTAACAGAGGAACAAGTGATTAGGGTTCTTCAAAAGGTGAGGAAAGCTGCTGTTAAATGGGACCAAGACAATCAAACCCTCTTTACCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

77

Amino Acids

8.87

Weight (kDa)

6.56

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	8 - 62	4.5e-12	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05365
fragaria_vesca	FvH4_7g25401 FvH4_7g25401
malus_domestica	MD01G1160400.v1.1
prunus_persica	Prupe.2G258300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0371361
rosa_multiflora	Rmu_sc0000809.1_g000036
rosa_roxburghii	Rroxscaffold_4G00285760
rosa_rugosa	Rorug01G0363300
rosa_samantha	Rh1AG373200 Rh1BG336700 Rh1CG350200 Rh1DG367800
rosa_wichuraiana	Rw1G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	83, 173
AluBI	AGCT	3 cut(s)	19, 115, 188
AluI	AGCT	3 cut(s)	19, 115, 188
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	28
ArsI	GACNNNNNNTTYG	2 cut(s)	114, 146
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	232
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	203
BmsI	GCATC	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	202
CviJI	RGCY	5 cut(s)	5, 19, 68, 115, 188
CviKI_1	RGCY	5 cut(s)	5, 19, 68, 115, 188
Eco47I	GGWCC	1 cut(s)	202
EcoT22I	ATGCAT	1 cut(s)	50
FaiI	YATR	2 cut(s)	89, 97
FaqI	GGGAC	1 cut(s)	215
Fnu4HI	GCNGC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	232
GluI	GCNGC	1 cut(s)	189
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	52, 73
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	2 cut(s)	34, 48
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	2 cut(s)	37, 120
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	1 cut(s)	232
MaeIII	GTNAC	3 cut(s)	124, 130, 142
MboII	GAAGA	2 cut(s)	95, 161
MluCI	AATT	2 cut(s)	28, 78
MnlI	CCTC	3 cut(s)	142, 174, 230
Mph1103I	ATGCAT	1 cut(s)	50
MseI	TTAA	2 cut(s)	63, 195
MslI	CAYNNNNRTG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	50
NlaIV	GGNNCC	1 cut(s)	203
NmuCI	GTSAC	2 cut(s)	124, 130
NsiI	ATGCAT	1 cut(s)	50
PctI	GAATGC	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	203
PspPI	GGNCC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	63, 195
SatI	GCNGC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	202
SetI	ASST	4 cut(s)	21, 117, 180, 190
SfaNI	GCATC	1 cut(s)	57
SgeI	CNNG	5 cut(s)	64, 85, 147, 167, 218
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	2 cut(s)	28, 78
SspMI	CTAG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	130
TasI	AATT	2 cut(s)	28, 78
Tru1I	TTAA	2 cut(s)	63, 195
Tru9I	TTAA	2 cut(s)	63, 195
TseFI	GTSAC	2 cut(s)	124, 130
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	2 cut(s)	124, 130
TspDTI	ATGAA	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	1 cut(s)	28
XspI	CTAG	1 cut(s)	232
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.