FvH4_7g25401

Superoxide dismutase 1 copper chaperone-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016664
Physical Location & Seq
Reverse (-)
19406818 .. 19407478
661 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25401.t2

Sequence Viewer

Length: 240 bp
ATGGGAAATGTTGTGGAATTGAAGGTGGGCTTGCACTGTGAGGAATGCATCAAGAAAATCCTCAAGGCCATCAAGAAAATCGAAGCAGATATCGAAACCTATGATGTGGATACACAGCTGAACAAGGTGATCGTGACCGGAAATGTCACCACAGAACAAGTCATCAGGGCTCTTCAGAAGATCAAGAAGACAGCAATCCCTTGGGACCAACAAGATGAAGCAACTTCTCAAGCCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

80

Amino Acids

8.85

Weight (kDa)

5.76

Isoelectric Point (pI)

29.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 8 - 62 3.1e-12 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05365
fragaria_vesca FvH4_7g25401 FvH4_7g25401
malus_domestica MD01G1160400.v1.1
prunus_persica Prupe.2G258300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0371361
rosa_multiflora Rmu_sc0000809.1_g000036
rosa_roxburghii Rroxscaffold_4G00285760
rosa_rugosa Rorug01G0363300
rosa_samantha Rh1AG373200 Rh1BG336700 Rh1CG350200 Rh1DG367800
rosa_wichuraiana Rw1G032840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 158
AgsI TTSAA 1 cut(s) 22
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
AoxI GGCC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 2 cut(s) 139, 139
AvaII GGWCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 194
BccI CCATC 1 cut(s) 77
BciVI GTATCC 1 cut(s) 103
BfuI GTATCC 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 206
BmsI GCATC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 194
BpuEI CTTGAG 2 cut(s) 47, 213
BsaJI CCNNGG 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 200
BshFI GGCC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 50
BsnI GGCC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 2 cut(s) 129, 180
BspANI GGCC 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 206
BspQI GCTCTTC 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 2 cut(s) 129, 180
BssT1I CCWWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 32
BstKTI GATC 2 cut(s) 132, 183
BstMBI GATC 2 cut(s) 129, 180
BstV2I GAAGAC 1 cut(s) 194
BsuI GTATCC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 205
CviJI RGCY 5 cut(s) 30, 68, 118, 170, 233
CviKI_1 RGCY 5 cut(s) 30, 68, 118, 170, 233
DpnI GATC 2 cut(s) 131, 182
DpnII GATC 2 cut(s) 129, 180
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 172
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 158
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 200
EcoT22I ATGCAT 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 200
FaiI YATR 1 cut(s) 102
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FaqI GGGAC 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 172
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 138
HpaII CCGG 1 cut(s) 138
HphI GGTGA 2 cut(s) 139, 139
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 4 cut(s) 52, 73, 133, 184
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 34, 48
Kzo9I GATC 2 cut(s) 129, 180
LguI GCTCTTC 1 cut(s) 177
LpnPI CCDG 2 cut(s) 151, 151
LweI GCATC 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 133, 145
MalI GATC 2 cut(s) 131, 182
MboI GATC 2 cut(s) 129, 180
MboII GAAGA 3 cut(s) 164, 190, 199
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 1 cut(s) 17
MnlI CCTC 2 cut(s) 34, 71
Mph1103I ATGCAT 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 50
NdeII GATC 2 cut(s) 129, 180
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 2 cut(s) 133, 145
NsiI ATGCAT 1 cut(s) 50
PciSI GCTCTTC 1 cut(s) 177
PctI GAATGC 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 118
SapI GCTCTTC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 129, 180
Sau96I GGNCC 1 cut(s) 205
SduI GDGCHC 1 cut(s) 172
SetI ASST 4 cut(s) 27, 101, 120, 129
SfaNI GCATC 1 cut(s) 57
SinI GGWCC 1 cut(s) 205
SmlI CTYRAG 2 cut(s) 62, 228
SmoI CTYRAG 2 cut(s) 62, 228
Sse9I AATT 1 cut(s) 17
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 81, 93
TasI AATT 1 cut(s) 17
TscAI CASTG 1 cut(s) 41
TseFI GTSAC 2 cut(s) 133, 145
Tsp45I GTSAC 2 cut(s) 133, 145
TspDTI ATGAA 1 cut(s) 231
TspRI CASTG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 205
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.