Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0016664

Physical Location & Seq

Genomic Coordinates Reverse (-)

26627630 .. 26628478

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1160400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGGAAATGTGGTGGAATTGAAGGTGGGCTTGCACTGCGAGGAATGCATCAAGAAAATCTTGAAGGCCATCAAGAAGATTGAAGATATTGAAACATACAACGTGGACCCACAACTCAACAAGGTCACGGTGACCGGAAACGTTACGGAGGAAGAAGTCGTTAGGGTTCTTCAAAAGATTGGAAAGATGGCAAGCACTTGGGAAGGAAAGGAAGCAACCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

75

Amino Acids

8.26

Weight (kDa)

5.81

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	8 - 62	3.3e-14	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05365
fragaria_vesca	FvH4_7g25401 FvH4_7g25401
malus_domestica	MD01G1160400.v1.1
prunus_persica	Prupe.2G258300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0371361
rosa_multiflora	Rmu_sc0000809.1_g000036
rosa_roxburghii	Rroxscaffold_4G00285760
rosa_rugosa	Rorug01G0363300
rosa_samantha	Rh1AG373200 Rh1BG336700 Rh1CG350200 Rh1DG367800
rosa_wichuraiana	Rw1G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	141
AgsI	TTSAA	5 cut(s)	22, 64, 83, 92, 173
AoxI	GGCC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	106
BccI	CCATC	2 cut(s)	77, 181
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	108
BmsI	GCATC	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	134
BshFI	GGCC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	32, 193
BstEII	GGTNACC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 45
BstPI	GGTNACC	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	68
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	2 cut(s)	32, 193
Cfr13I	GGNCC	1 cut(s)	106
CviJI	RGCY	2 cut(s)	30, 68
CviKI_1	RGCY	2 cut(s)	30, 68
Eco47I	GGWCC	1 cut(s)	106
Eco91I	GGTNACC	1 cut(s)	130
EcoO65I	GGTNACC	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	50
FaiI	YATR	1 cut(s)	97
FalI	AAGNNNNNCTT	4 cut(s)	14, 46, 44, 76
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	1 cut(s)	135
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188III	TCNNGA	4 cut(s)	52, 61, 73, 222
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	3 cut(s)	16, 58, 197
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	2 cut(s)	102, 141
HpyCH4V	TGCA	2 cut(s)	34, 48
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 45
HpySE526I	ACGT	2 cut(s)	102, 141
LpnPI	CCDG	1 cut(s)	148
LweI	GCATC	1 cut(s)	57
MaeII	ACGT	2 cut(s)	102, 141
MaeIII	GTNAC	3 cut(s)	124, 130, 142
MboII	GAAGA	4 cut(s)	88, 95, 161, 164
MluCI	AATT	1 cut(s)	17
MnlI	CCTC	2 cut(s)	34, 142
Mph1103I	ATGCAT	1 cut(s)	50
MspI	CCGG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	36, 45
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	2 cut(s)	124, 130
NsiI	ATGCAT	1 cut(s)	50
PctI	GAATGC	1 cut(s)	50
Psp1406I	AACGTT	1 cut(s)	141
PspEI	GGTNACC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	106
Sau96I	GGNCC	1 cut(s)	106
SetI	ASST	5 cut(s)	27, 105, 126, 144, 221
SfaNI	GCATC	1 cut(s)	57
SinI	GGWCC	1 cut(s)	106
Sse9I	AATT	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	2 cut(s)	105, 144
TasI	AATT	1 cut(s)	17
TscAI	CASTG	1 cut(s)	41
TseFI	GTSAC	2 cut(s)	124, 130
Tsp45I	GTSAC	2 cut(s)	124, 130
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	106
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.