Rroxscaffold_4G00285760

Superoxide dismutase 1 copper chaperone-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016664
Physical Location & Seq
Forward (+)
6958354 .. 6959700
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00285760.1

Sequence Viewer

Length: 222 bp
ATGGTTGTGGAATTGAAGGTGGGCTTGCACTGTGAGGAATGCATCAAGAAAATCCTGAAGGCCATCAAGAAGATCGAAGATATCGAAACATATAATGTGGACACAGAGCTGAACAAGGTGATTGTGACCGGTAATGTTACCACAGAACAAGTCATCAGAGCTCTTCAGAAGATTAAGAAGAATGCAATCCCTTGGGGCCAAGAAGACGAAGCAACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

73

Amino Acids

8.25

Weight (kDa)

5.79

Isoelectric Point (pI)

32.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 6 - 60 1.3e-12 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05365
fragaria_vesca FvH4_7g25401 FvH4_7g25401
malus_domestica MD01G1160400.v1.1
prunus_persica Prupe.2G258300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0371361
rosa_multiflora Rmu_sc0000809.1_g000036
rosa_roxburghii Rroxscaffold_4G00285760
rosa_rugosa Rorug01G0363300
rosa_samantha Rh1AG373200 Rh1BG336700 Rh1CG350200 Rh1DG367800
rosa_wichuraiana Rw1G032840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 77, 149
AgeI ACCGGT 1 cut(s) 128
AgsI TTSAA 1 cut(s) 16
AluBI AGCT 2 cut(s) 109, 161
AluI AGCT 2 cut(s) 109, 161
Alw21I GWGCWC 1 cut(s) 163
AoxI GGCC 2 cut(s) 60, 196
AsiGI ACCGGT 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 130
BanII GRGCYC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 163
BccI CCATC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 197
BmsI GCATC 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 128
Bse118I RCCGGY 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 191
BshFI GGCC 2 cut(s) 62, 198
BshTI ACCGGT 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 129
BsmI GAATGC 2 cut(s) 44, 187
BsnI GGCC 2 cut(s) 62, 198
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 1 cut(s) 72
BspANI GGCC 2 cut(s) 62, 198
BspLI GGNNCC 1 cut(s) 197
BspQI GCTCTTC 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 26
BstKTI GATC 1 cut(s) 75
BstMBI GATC 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 210
BsuRI GGCC 2 cut(s) 62, 198
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 26
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 196
CspAI ACCGGT 1 cut(s) 128
CviJI RGCY 5 cut(s) 24, 62, 109, 161, 198
CviKI_1 RGCY 5 cut(s) 24, 62, 109, 161, 198
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Ecl136II GAGCTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 163
Eco32I GATATC 1 cut(s) 82
Eco53kI GAGCTC 1 cut(s) 161
Eco57I CTGAAG 2 cut(s) 77, 149
EcoICRI GAGCTC 1 cut(s) 161
EcoRV GATATC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 191
EcoT22I ATGCAT 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 191
FaiI YATR 2 cut(s) 91, 93
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FriOI GRGCYC 1 cut(s) 163
HaeIII GGCC 2 cut(s) 62, 198
HapII CCGG 1 cut(s) 129
HpaII CCGG 1 cut(s) 129
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 158, 168
Hpy188III TCNNGA 4 cut(s) 46, 55, 67, 219
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 10, 52
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 3 cut(s) 28, 42, 185
Kzo9I GATC 1 cut(s) 72
LguI GCTCTTC 1 cut(s) 168
LpnPI CCDG 2 cut(s) 68, 142
LweI GCATC 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 124, 136
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 6 cut(s) 82, 89, 155, 181, 190, 215
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 1 cut(s) 11
MnlI CCTC 1 cut(s) 28
Mph1103I ATGCAT 1 cut(s) 44
MseI TTAA 1 cut(s) 174
MspI CCGG 1 cut(s) 129
Mva1269I GAATGC 2 cut(s) 44, 187
NdeII GATC 1 cut(s) 72
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 2 cut(s) 44, 187
PinAI ACCGGT 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 1 cut(s) 196
SacI GAGCTC 1 cut(s) 163
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 174
Sau3AI GATC 1 cut(s) 72
Sau96I GGNCC 1 cut(s) 196
SduI GDGCHC 1 cut(s) 163
SetI ASST 4 cut(s) 21, 111, 120, 163
SfaNI GCATC 1 cut(s) 51
SgeI CNNG 9 cut(s) 37, 58, 67, 79, 127, 141, 161, 204, 212
Sse9I AATT 1 cut(s) 11
SstI GAGCTC 1 cut(s) 163
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 2 cut(s) 75, 84
TasI AATT 1 cut(s) 11
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 35
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspRI CASTG 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.