Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012881

Physical Location & Seq

Genomic Coordinates Forward (+)

1608988 .. 1610527

Gene Structure 1540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAGGTCACCGGTGCAACTCCAACACGGCTCAGACGCCACTAACGGTTTCCACACGCTGCAGCCTCACGATCAGACCGATGGTCCGATCAAGAGAGTGTGTCTCACGCGCGGTATGCATGTCCCTGAACACGTTGCGATGCACCACACACACGACGTTGGTCCGGACCAGTGTTGCTCCTCGGTGGTGCAGATGATCCACGCGCCGCCTGAGTCCGTGTGGGCTCTTGTGCGGCGTTTCGATAATCCGAAGGTTTACAAGAACTTCATCAGACAGTGCCGTATCGTCCAAGGCGATGGACTACACGTCGGCGATCTCCGGGAGGTCATGGTGGTCTCTGGACTCCCGGCGGTCTCGAGCACCGAGAGGCTCGAGATCTTGGACGAGGAGCGTCACGTGATAAGCTTTAGTGTCGTTGGTGGGGACCACAGGCTCAAGAACTACCGATCGGTGACGACACTACACGCGTCGGACGACGAAGGTACCGTGGTGGTGGAGTCTTACATCGTTGATGTGCCGCCGGGAAACACGGAGGAGGAAACTCTAAGCTTCGTTGATACTATCGTCCGGTGCAACCTTCAGTCTCTGGCTCGAAGTACCAACCGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009753 GO:0009755 GO:0009867 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071395 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

203

Amino Acids

22.66

Weight (kDa)

5.97

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	60 - 198	1.5e-16	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05440
fragaria_vesca	FvH4_7g25180
malus_domestica	MD01G1158500.v1.1 MD07G1227100.v1.1
prunus_persica	Prupe.2G256700_v2.0.a1
pyrus_communis	pycom07g20570
rosa_chinensis	RchiOBHm_Chr1g0371101
rosa_laevigata	RLG00000026987
rosa_multiflora	Rmu_co8363357.1_g000001 Rmu_sc0001018.1_g000033 Rmu_sc0003714.1_g000007
rosa_roxburghii	Rroxscaffold_4G00286000
rosa_rugosa	Rorug01G0361300
rosa_samantha	Rh1AG371600 Rh1BG334900 Rh1CG348300 Rh1DG366200
rosa_wichuraiana	Rw1G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	482
AccB1I	GGYRCC	1 cut(s)	482
AccII	CGCG	4 cut(s)	109, 111, 203, 467
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	5 cut(s)	111, 206, 232, 350, 518
AclWI	GGATC	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	563
AcvI	CACGTG	1 cut(s)	397
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	2 cut(s)	484, 598
AflIII	ACRYGT	3 cut(s)	130, 304, 465
AgeI	ACCGGT	1 cut(s)	10
AhdI	GACNNNNNGTC	2 cut(s)	81, 305
AjiI	CACGTC	1 cut(s)	307
AluBI	AGCT	2 cut(s)	405, 549
AluI	AGCT	2 cut(s)	405, 549
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	4 cut(s)	107, 340, 358, 588
AlwI	GGATC	1 cut(s)	190
AlwNI	CAGNNNCTG	1 cut(s)	586
Ama87I	CYCGRG	2 cut(s)	355, 371
Aor13HI	TCCGGA	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	58, 61
AsiGI	ACCGGT	1 cut(s)	10
Asp718I	GGTACC	1 cut(s)	482
AspLEI	GCGC	2 cut(s)	111, 205
AspS9I	GGNCC	4 cut(s)	83, 161, 166, 424
AsuC2I	CCSGG	3 cut(s)	320, 347, 522
AsuHPI	GGTGA	1 cut(s)	463
AvaI	CYCGRG	2 cut(s)	355, 371
AvaII	GGWCC	4 cut(s)	83, 161, 166, 424
BaeI	ACNNNNGTAYC	6 cut(s)	466, 474, 499, 507, 549, 582
BanI	GGYRCC	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	226
BbrPI	CACGTG	1 cut(s)	397
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	45, 73
BccI	CCATC	2 cut(s)	74, 290
BceAI	ACGGC	2 cut(s)	43, 264
BcnI	CCSGG	3 cut(s)	320, 347, 522
BcoDI	GTCTC	4 cut(s)	107, 340, 358, 588
BfmI	CTRYAG	1 cut(s)	59
BglII	AGATCT	1 cut(s)	375
BisI	GCNGC	5 cut(s)	59, 62, 206, 233, 518
BlsI	GCNGC	5 cut(s)	60, 63, 207, 234, 519
Bme1390I	CCNGG	3 cut(s)	320, 347, 522
Bme18I	GGWCC	4 cut(s)	83, 161, 166, 424
BmeRI	GACNNNNNGTC	2 cut(s)	81, 305
BmeT110I	CYCGRG	2 cut(s)	355, 371
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	4 cut(s)	83, 161, 166, 424
BmiI	GGNNCC	2 cut(s)	425, 484
BmrFI	CCNGG	3 cut(s)	320, 347, 522
BmsI	GCATC	1 cut(s)	129
BoxI	GACNNNNGTC	1 cut(s)	159
BplI	GAGNNNNNCTC	2 cut(s)	87, 119
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	3 cut(s)	320, 347, 522
BsaAI	YACGTR	1 cut(s)	397
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	2 cut(s)	340, 358
BsaJI	CCNNGG	3 cut(s)	180, 289, 486
BsaWI	WCCGGW	3 cut(s)	10, 163, 567
Bse118I	RCCGGY	2 cut(s)	10, 603
Bse1I	ACTGG	1 cut(s)	169
BseAI	TCCGGA	1 cut(s)	163
BseDI	CCNNGG	3 cut(s)	180, 289, 486
BseMII	CTCAG	2 cut(s)	45, 201
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	3 cut(s)	169, 401, 548
BseXI	GCAGC	2 cut(s)	45, 73
BsgI	GTGCAG	1 cut(s)	209
Bsh1236I	CGCG	4 cut(s)	109, 111, 203, 467
Bsh1285I	CGRYCG	1 cut(s)	449
BshNI	GGYRCC	1 cut(s)	482
BshTI	ACCGGT	1 cut(s)	10
BsiEI	CGRYCG	1 cut(s)	449
BsiHKAI	GWGCWC	1 cut(s)	362
BsiHKCI	CYCGRG	2 cut(s)	355, 371
BsiSI	CCGG	7 cut(s)	11, 164, 319, 347, 521, 568, 604
BslFI	GGGAC	2 cut(s)	107, 437
BsmAI	GTCTC	4 cut(s)	107, 340, 358, 588
BsmFI	GGGAC	2 cut(s)	107, 437
Bso31I	GGTCTC	2 cut(s)	340, 358
BsoBI	CYCGRG	2 cut(s)	355, 371
Bsp1286I	GDGCHC	2 cut(s)	226, 362
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	6 cut(s)	70, 87, 195, 313, 375, 446
BspACI	CCGC	5 cut(s)	111, 206, 232, 350, 518
BspCNI	CTCAG	2 cut(s)	44, 202
BspEI	TCCGGA	1 cut(s)	163
BspFNI	CGCG	4 cut(s)	109, 111, 203, 467
BspLI	GGNNCC	2 cut(s)	425, 484
BspMAI	CTGCAG	1 cut(s)	63
BspPI	GGATC	1 cut(s)	190
BspT107I	GGYRCC	1 cut(s)	482
BspTNI	GGTCTC	2 cut(s)	340, 358
BsrFI	RCCGGY	2 cut(s)	10, 603
BsrI	ACTGG	1 cut(s)	169
BssAI	RCCGGY	2 cut(s)	10, 603
BssECI	CCNNGG	3 cut(s)	180, 289, 486
BssMI	GATC	6 cut(s)	70, 87, 195, 313, 375, 446
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	289
Bst4CI	ACNGT	3 cut(s)	47, 276, 487
BstACI	GRCGYC	1 cut(s)	36
BstBAI	YACGTR	1 cut(s)	397
BstDEI	CTNAG	3 cut(s)	31, 210, 545
BstDSI	CCRYGG	1 cut(s)	486
BstEII	GGTNACC	1 cut(s)	6
BstFNI	CGCG	4 cut(s)	109, 111, 203, 467
BstHHI	GCGC	2 cut(s)	111, 205
BstKTI	GATC	6 cut(s)	73, 90, 198, 316, 378, 449
BstMAI	GTCTC	4 cut(s)	107, 340, 358, 588
BstMBI	GATC	6 cut(s)	70, 87, 195, 313, 375, 446
BstMCI	CGRYCG	1 cut(s)	449
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNSI	RCATGY	1 cut(s)	122
BstPAI	GACNNNNGTC	1 cut(s)	159
BstPI	GGTNACC	1 cut(s)	6
BstSCI	CCNGG	3 cut(s)	318, 345, 520
BstSFI	CTRYAG	1 cut(s)	59
BstUI	CGCG	4 cut(s)	109, 111, 203, 467
BstV1I	GCAGC	2 cut(s)	45, 73
BstX2I	RGATCY	1 cut(s)	375
BstXI	CCANNNNNNTGG	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	375
BtgI	CCRYGG	1 cut(s)	486
BtgZI	GCGATG	2 cut(s)	152, 309
BtrI	CACGTC	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	176, 281
CaiI	CAGNNNCTG	1 cut(s)	586
CfoI	GCGC	2 cut(s)	111, 205
Cfr10I	RCCGGY	2 cut(s)	10, 603
Cfr13I	GGNCC	4 cut(s)	83, 161, 166, 424
CseI	GACGC	3 cut(s)	44, 380, 456
Csp6I	GTAC	2 cut(s)	483, 597
CspAI	ACCGGT	1 cut(s)	10
CviAII	CATG	2 cut(s)	119, 328
CviJI	RGCY	8 cut(s)	30, 64, 224, 370, 405, 433, 549, 590
CviKI_1	RGCY	8 cut(s)	30, 64, 224, 370, 405, 433, 549, 590
CviQI	GTAC	2 cut(s)	483, 597
DdeI	CTNAG	3 cut(s)	31, 210, 545
DpnI	GATC	6 cut(s)	72, 89, 197, 315, 377, 448
DpnII	GATC	6 cut(s)	70, 87, 195, 313, 375, 446
DriI	GACNNNNNGTC	2 cut(s)	81, 305
Eam1105I	GACNNNNNGTC	2 cut(s)	81, 305
Eco130I	CCWWGG	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	226
Eco31I	GGTCTC	2 cut(s)	340, 358
Eco47I	GGWCC	4 cut(s)	83, 161, 166, 424
Eco57I	CTGAAG	1 cut(s)	563
Eco72I	CACGTG	1 cut(s)	397
Eco88I	CYCGRG	2 cut(s)	355, 371
Eco91I	GGTNACC	1 cut(s)	6
EcoO65I	GGTNACC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	289
EcoT22I	ATGCAT	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	2 cut(s)	122, 331
FaiI	YATR	3 cut(s)	116, 120, 329
FaqI	GGGAC	2 cut(s)	107, 437
FatI	CATG	2 cut(s)	118, 327
Fnu4HI	GCNGC	5 cut(s)	59, 62, 206, 233, 518
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	5 cut(s)	59, 62, 206, 233, 518
GlaI	GCGC	2 cut(s)	110, 204
GluI	GCNGC	5 cut(s)	59, 62, 206, 233, 518
HapII	CCGG	7 cut(s)	11, 164, 319, 347, 521, 568, 604
HgaI	GACGC	3 cut(s)	44, 380, 456
HhaI	GCGC	2 cut(s)	111, 205
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	122, 331
Hin6I	GCGC	2 cut(s)	109, 203
HinP1I	GCGC	2 cut(s)	109, 203
HindIII	AAGCTT	2 cut(s)	403, 547
HinfI	GANTC	3 cut(s)	212, 342, 497
HpaII	CCGG	7 cut(s)	11, 164, 319, 347, 521, 568, 604
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	6 cut(s)	34, 75, 87, 249, 272, 472
Hpy188III	TCNNGA	7 cut(s)	68, 91, 164, 339, 355, 373, 436
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	4 cut(s)	158, 311, 472, 479
HpyAV	CCTTC	3 cut(s)	244, 473, 587
HpyCH4III	ACNGT	3 cut(s)	47, 276, 487
HpyCH4IV	ACGT	4 cut(s)	132, 156, 306, 396
HpyCH4V	TGCA	6 cut(s)	16, 61, 118, 142, 190, 573
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	3 cut(s)	31, 210, 545
HpySE526I	ACGT	4 cut(s)	132, 156, 306, 396
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	122, 331
HspAI	GCGC	2 cut(s)	109, 203
Kpn2I	TCCGGA	1 cut(s)	163
KpnI	GGTACC	1 cut(s)	486
Kzo9I	GATC	6 cut(s)	70, 87, 195, 313, 375, 446
LmnI	GCTCC	2 cut(s)	182, 388
Lsp1109I	GCAGC	2 cut(s)	45, 73
LweI	GCATC	1 cut(s)	129
MaeII	ACGT	4 cut(s)	132, 156, 306, 396
MaeIII	GTNAC	3 cut(s)	6, 392, 451
MalI	GATC	6 cut(s)	72, 89, 197, 315, 377, 448
MboI	GATC	6 cut(s)	70, 87, 195, 313, 375, 446
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	2 cut(s)	226, 362
MluI	ACGCGT	1 cut(s)	465
MlyI	GAGTC	3 cut(s)	221, 336, 506
MmeI	TCCRAC	2 cut(s)	46, 450
MnlI	CCTC	7 cut(s)	75, 190, 316, 360, 379, 526, 529
Mph1103I	ATGCAT	1 cut(s)	120
MroI	TCCGGA	1 cut(s)	163
MspI	CCGG	7 cut(s)	11, 164, 319, 347, 521, 568, 604
MspR9I	CCNGG	3 cut(s)	320, 347, 522
MvnI	CGCG	4 cut(s)	109, 111, 203, 467
MwoI	GCNNNNNNNGC	1 cut(s)	115
NciI	CCSGG	3 cut(s)	320, 347, 522
NdeII	GATC	6 cut(s)	70, 87, 195, 313, 375, 446
NlaIII	CATG	2 cut(s)	122, 331
NlaIV	GGNNCC	2 cut(s)	425, 484
NmuCI	GTSAC	3 cut(s)	6, 392, 451
NsiI	ATGCAT	1 cut(s)	120
NspI	RCATGY	1 cut(s)	122
PaeR7I	CTCGAG	2 cut(s)	355, 371
PcsI	WCGNNNNNNNCGW	4 cut(s)	75, 291, 471, 483
PfoI	TCCNGGA	1 cut(s)	318
PinAI	ACCGGT	1 cut(s)	10
PkrI	GCNGC	5 cut(s)	60, 63, 207, 234, 519
Ple19I	CGATCG	1 cut(s)	449
PleI	GAGTC	3 cut(s)	220, 336, 505
PmaCI	CACGTG	1 cut(s)	397
PmlI	CACGTG	1 cut(s)	397
PpsI	GAGTC	3 cut(s)	220, 336, 505
Ppu21I	YACGTR	1 cut(s)	397
PshAI	GACNNNNGTC	1 cut(s)	159
PspCI	CACGTG	1 cut(s)	397
PspEI	GGTNACC	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	425, 484
PspPI	GGNCC	4 cut(s)	83, 161, 166, 424
PstI	CTGCAG	1 cut(s)	63
PstNI	CAGNNNCTG	1 cut(s)	586
PsuI	RGATCY	1 cut(s)	375
PvuI	CGATCG	1 cut(s)	449
RsaI	GTAC	2 cut(s)	484, 598
RsaNI	GTAC	2 cut(s)	483, 597
SatI	GCNGC	5 cut(s)	59, 62, 206, 233, 518
Sau3AI	GATC	6 cut(s)	70, 87, 195, 313, 375, 446
Sau96I	GGNCC	4 cut(s)	83, 161, 166, 424
SchI	GAGTC	3 cut(s)	221, 336, 506
ScrFI	CCNGG	3 cut(s)	320, 347, 522
SduI	GDGCHC	2 cut(s)	226, 362
SfaNI	GCATC	1 cut(s)	129
SfcI	CTRYAG	1 cut(s)	59
Sfr274I	CTCGAG	2 cut(s)	355, 371
SgrAI	CRCCGGYG	1 cut(s)	10
SinI	GGWCC	4 cut(s)	83, 161, 166, 424
SlaI	CTCGAG	2 cut(s)	355, 371
SmlI	CTYRAG	3 cut(s)	355, 371, 434
SmoI	CTYRAG	3 cut(s)	355, 371, 434
SsiI	CCGC	5 cut(s)	111, 206, 232, 350, 518
StyD4I	CCNGG	3 cut(s)	318, 345, 520
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	3 cut(s)	47, 276, 487
TaiI	ACGT	4 cut(s)	135, 159, 309, 399
TaqI	TCGA	4 cut(s)	240, 356, 372, 592
TaqII	GACCGA	1 cut(s)	92
TauI	GCSGC	3 cut(s)	208, 235, 520
TscAI	CASTG	2 cut(s)	176, 281
TseFI	GTSAC	3 cut(s)	6, 392, 451
TseI	GCWGC	2 cut(s)	58, 61
Tsp45I	GTSAC	3 cut(s)	6, 392, 451
TspDTI	ATGAA	1 cut(s)	256
TspGWI	ACGGA	2 cut(s)	205, 545
TspRI	CASTG	2 cut(s)	176, 281
VpaK11BI	GGWCC	4 cut(s)	83, 161, 166, 424
XceI	RCATGY	1 cut(s)	122
XhoI	CTCGAG	2 cut(s)	355, 371
Zsp2I	ATGCAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.