MD01G1158500.v1.1

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0012881
Physical Location & Seq
Reverse (-)
26525621 .. 26526244
624 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1158500.v1.1.491

Sequence Viewer

Length: 624 bp
ATGCCTTCACCAATCCAATTTCAAAGACCAATCAACCCTCCTAATTATCACCACCCCGCAAACACAATCCACCACAAACAATTCCAATCCCAGGCAGTCGTCGCCGCACTCGACCTCACACGCCACCACTCCCTCGTGATGGCTCCCAACCAGTGCTGCTCTTCCGTCGTGCAATCCATCGAGGCACCCGTCCCGACTGTCTGGTCCGTCGTGCGGCGCTTCGACAACCCCCAAGCATACAAGCACTTCCTCAAGAGCTGCCACGTCATCGACGGAAACGGCGACGTGGGCACTCTCCGGGAGGTCCACGTGGTGTCGGGACTACCAGCGGGGTCCAGCACGGAGCGCCTTGAGATTCTGGACGACGAGCGGCACGTGATCAGCTTCAGCGTGGTGGGCGGGGACCATCGGCTGACGAACTACCGGTCCGTTACCACACTGCATGACTCACCCAACGGAGTGGGGACCATCGTTGTCGAGTCGTACGTGGTGGACGTACCGCCGGGGAACACGAAAGAGGAGACGTGCGTGTTTGTGGACACAATTGTGCGTTGCAACTTGCAGTCGTTGGCTCAGATCGCGGAGAGTATGGCCAATAAGCCCACCACCAAGAAACCCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

208

Amino Acids

22.75

Weight (kDa)

6.62

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 55 - 195 4.8e-17 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05440
fragaria_vesca FvH4_7g25180
malus_domestica MD01G1158500.v1.1 MD07G1227100.v1.1
prunus_persica Prupe.2G256700_v2.0.a1
pyrus_communis pycom07g20570
rosa_chinensis RchiOBHm_Chr1g0371101
rosa_laevigata RLG00000026987
rosa_multiflora Rmu_co8363357.1_g000001 Rmu_sc0001018.1_g000033 Rmu_sc0003714.1_g000007
rosa_roxburghii Rroxscaffold_4G00286000
rosa_rugosa Rorug01G0361300
rosa_samantha Rh1AG371600 Rh1BG334900 Rh1CG348300 Rh1DG366200
rosa_wichuraiana Rw1G032680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 184
AccBSI CCGCTC 1 cut(s) 370
AccII CGCG 1 cut(s) 581
AciI CCGC 8 cut(s) 57, 105, 214, 329, 370, 399, 500, 581
AcoI YGGCCR 1 cut(s) 591
AcuI CTGAAG 1 cut(s) 370
AcvI CACGTG 2 cut(s) 310, 376
AdeI CACNNNGTG 1 cut(s) 313
AfaI GTAC 2 cut(s) 485, 498
AfiI CCNNNNNNNGG 3 cut(s) 91, 139, 213
AgeI ACCGGT 1 cut(s) 423
AgsI TTSAA 1 cut(s) 23
AjiI CACGTC 3 cut(s) 265, 286, 525
AjnI CCWGG 1 cut(s) 90
AleI CACNNNNGTG 1 cut(s) 545
AloI GAACNNNNNNTCC 2 cut(s) 410, 442
AluBI AGCT 2 cut(s) 258, 384
AluI AGCT 2 cut(s) 258, 384
Alw26I GTCTC 1 cut(s) 515
AoxI GGCC 1 cut(s) 591
ApeKI GCWGC 2 cut(s) 156, 258
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
AsiGI ACCGGT 1 cut(s) 423
AspLEI GCGC 2 cut(s) 219, 348
AspS9I GGNCC 6 cut(s) 204, 304, 333, 403, 426, 465
AsuC2I CCSGG 2 cut(s) 299, 504
AsuHPI GGTGA 2 cut(s) 41, 441
AvaII GGWCC 6 cut(s) 204, 304, 333, 403, 426, 465
BaeGI GKGCMC 1 cut(s) 293
BalI TGGCCA 1 cut(s) 593
BanI GGYRCC 1 cut(s) 184
BauI CACGAG 1 cut(s) 134
BbrPI CACGTG 2 cut(s) 310, 376
BbvI GCAGC 2 cut(s) 143, 245
BccI CCATC 4 cut(s) 133, 185, 414, 476
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 92
BclI TGATCA 1 cut(s) 378
BcnI CCSGG 2 cut(s) 299, 504
BcoDI GTCTC 1 cut(s) 515
BfoI RGCGCY 2 cut(s) 220, 349
BisI GCNGC 5 cut(s) 105, 157, 215, 259, 371
BlsI GCNGC 5 cut(s) 106, 158, 216, 260, 372
Bme1390I CCNGG 3 cut(s) 92, 299, 504
Bme18I GGWCC 6 cut(s) 204, 304, 333, 403, 426, 465
BmgBI CACGTC 3 cut(s) 265, 286, 525
BmgT120I GGNCC 6 cut(s) 204, 304, 333, 403, 426, 465
BmiI GGNNCC 5 cut(s) 144, 186, 334, 404, 466
BmrFI CCNGG 3 cut(s) 92, 299, 504
BpuEI CTTGAG 2 cut(s) 236, 371
BpuMI CCSGG 2 cut(s) 299, 504
BsaAI YACGTR 3 cut(s) 310, 376, 487
BsaJI CCNNGG 2 cut(s) 90, 503
BsaWI WCCGGW 1 cut(s) 423
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 139, 213
Bse118I RCCGGY 1 cut(s) 423
Bse1I ACTGG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 2 cut(s) 90, 503
BseLI CCNNNNNNNGG 3 cut(s) 91, 139, 213
BseMII CTCAG 1 cut(s) 587
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 533
BseSI GKGCMC 1 cut(s) 293
BseXI GCAGC 2 cut(s) 143, 245
Bsh1236I CGCG 1 cut(s) 581
BshFI GGCC 1 cut(s) 593
BshNI GGYRCC 1 cut(s) 184
BshTI ACCGGT 1 cut(s) 423
BsiSI CCGG 3 cut(s) 298, 424, 503
BsiWI CGTACG 1 cut(s) 483
BslFI GGGAC 4 cut(s) 176, 333, 416, 478
BslI CCNNNNNNNGG 3 cut(s) 91, 139, 213
BsmAI GTCTC 1 cut(s) 515
BsmBI CGTCTC 1 cut(s) 515
BsmFI GGGAC 4 cut(s) 176, 333, 416, 478
BsnI GGCC 1 cut(s) 593
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 2 cut(s) 378, 576
BspACI CCGC 8 cut(s) 57, 105, 214, 329, 370, 399, 500, 581
BspANI GGCC 1 cut(s) 593
BspCNI CTCAG 1 cut(s) 586
BspFNI CGCG 1 cut(s) 581
BspHI TCATGA 1 cut(s) 620
BspLI GGNNCC 5 cut(s) 144, 186, 334, 404, 466
BspQI GCTCTTC 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 370
BsrFI RCCGGY 1 cut(s) 423
BsrI ACTGG 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 423
BssECI CCNNGG 2 cut(s) 90, 503
BssMI GATC 2 cut(s) 378, 576
BssSI CACGAG 1 cut(s) 134
Bst2BI CACGAG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 166
BstBAI YACGTR 3 cut(s) 310, 376, 487
BstDEI CTNAG 1 cut(s) 573
BstFNI CGCG 1 cut(s) 581
BstH2I RGCGCY 2 cut(s) 220, 349
BstHHI GCGC 2 cut(s) 219, 348
BstKTI GATC 2 cut(s) 381, 579
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 2 cut(s) 378, 576
BstMWI GCNNNNNNNGC 5 cut(s) 101, 288, 345, 396, 578
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 3 cut(s) 90, 297, 502
BstSLI GKGCMC 1 cut(s) 293
BstUI CGCG 1 cut(s) 581
BstV1I GCAGC 2 cut(s) 143, 245
BstXI CCANNNNNNTGG 1 cut(s) 460
BsuRI GGCC 1 cut(s) 593
BtrI CACGTC 3 cut(s) 265, 286, 525
BtsI GCAGTG 1 cut(s) 437
BtsIMutI CAGTG 2 cut(s) 158, 437
CciI TCATGA 1 cut(s) 620
CfoI GCGC 2 cut(s) 219, 348
Cfr10I RCCGGY 1 cut(s) 423
Cfr13I GGNCC 6 cut(s) 204, 304, 333, 403, 426, 465
CpoI CGGWCCG 1 cut(s) 426
Csp6I GTAC 2 cut(s) 484, 497
CspAI ACCGGT 1 cut(s) 423
CspI CGGWCCG 1 cut(s) 426
CviAII CATG 2 cut(s) 443, 621
CviJI RGCY 7 cut(s) 143, 258, 384, 412, 572, 593, 601
CviKI_1 RGCY 7 cut(s) 143, 258, 384, 412, 572, 593, 601
CviQI GTAC 2 cut(s) 484, 497
DdeI CTNAG 1 cut(s) 573
DpnI GATC 2 cut(s) 380, 578
DpnII GATC 2 cut(s) 378, 576
DraIII CACNNNGTG 1 cut(s) 313
DrdI GACNNNNNNGTC 1 cut(s) 202
DseDI GACNNNNNNGTC 1 cut(s) 202
EaeI YGGCCR 1 cut(s) 591
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco47I GGWCC 6 cut(s) 204, 304, 333, 403, 426, 465
Eco57I CTGAAG 1 cut(s) 370
Eco72I CACGTG 2 cut(s) 310, 376
EcoRII CCWGG 1 cut(s) 90
Esp3I CGTCTC 1 cut(s) 515
FaeI CATG 2 cut(s) 446, 624
FaiI YATR 4 cut(s) 238, 444, 590, 622
FaqI GGGAC 4 cut(s) 176, 333, 416, 478
FatI CATG 2 cut(s) 442, 620
FauI CCCGC 3 cut(s) 64, 322, 392
FbaI TGATCA 1 cut(s) 378
Fnu4HI GCNGC 5 cut(s) 105, 157, 215, 259, 371
Fsp4HI GCNGC 5 cut(s) 105, 157, 215, 259, 371
GlaI GCGC 2 cut(s) 218, 347
GluI GCNGC 5 cut(s) 105, 157, 215, 259, 371
HaeII RGCGCY 2 cut(s) 220, 349
HaeIII GGCC 1 cut(s) 593
HapII CCGG 3 cut(s) 298, 424, 503
HhaI GCGC 2 cut(s) 219, 348
Hin1II CATG 2 cut(s) 446, 624
Hin6I GCGC 2 cut(s) 217, 346
HinP1I GCGC 2 cut(s) 217, 346
HinfI GANTC 3 cut(s) 355, 446, 479
HpaII CCGG 3 cut(s) 298, 424, 503
HphI GGTGA 2 cut(s) 41, 441
Hpy166II GTNNAC 3 cut(s) 307, 493, 538
Hpy188I TCNGA 1 cut(s) 576
Hpy188III TCNNGA 6 cut(s) 136, 193, 253, 318, 359, 621
Hpy8I GTNNAC 3 cut(s) 307, 493, 538
Hpy99I CGWCG 6 cut(s) 104, 170, 212, 275, 287, 368
HpyAV CCTTC 1 cut(s) 15
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 7 cut(s) 264, 285, 309, 375, 486, 495, 524
HpyCH4V TGCA 4 cut(s) 172, 442, 555, 562
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 288, 345, 396, 578
HpyF3I CTNAG 1 cut(s) 573
HpySE526I ACGT 7 cut(s) 264, 285, 309, 375, 486, 495, 524
Hsp92II CATG 2 cut(s) 446, 624
HspAI GCGC 2 cut(s) 217, 346
Ksp22I TGATCA 1 cut(s) 378
Kzo9I GATC 2 cut(s) 378, 576
LguI GCTCTTC 1 cut(s) 166
LmnI GCTCC 2 cut(s) 148, 343
Lsp1109I GCAGC 2 cut(s) 143, 245
MaeII ACGT 7 cut(s) 264, 285, 309, 375, 486, 495, 524
MaeIII GTNAC 1 cut(s) 430
MalI GATC 2 cut(s) 380, 578
MbiI CCGCTC 1 cut(s) 370
MboI GATC 2 cut(s) 378, 576
MboII GAAGA 1 cut(s) 153
MfeI CAATTG 1 cut(s) 543
MhlI GDGCHC 1 cut(s) 293
MlsI TGGCCA 1 cut(s) 593
MluCI AATT 4 cut(s) 17, 43, 80, 543
MluNI TGGCCA 1 cut(s) 593
MlyI GAGTC 2 cut(s) 440, 488
MnlI CCTC 7 cut(s) 48, 125, 143, 175, 260, 295, 511
Mox20I TGGCCA 1 cut(s) 593
MscI TGGCCA 1 cut(s) 593
MslI CAYNNNNRTG 1 cut(s) 545
Msp20I TGGCCA 1 cut(s) 593
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 3 cut(s) 298, 424, 503
MspR9I CCNGG 3 cut(s) 92, 299, 504
MunI CAATTG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 581
MwoI GCNNNNNNNGC 5 cut(s) 101, 288, 345, 396, 578
NciI CCSGG 2 cut(s) 299, 504
NdeII GATC 2 cut(s) 378, 576
NlaIII CATG 2 cut(s) 446, 624
NlaIV GGNNCC 5 cut(s) 144, 186, 334, 404, 466
OliI CACNNNNGTG 1 cut(s) 545
PagI TCATGA 1 cut(s) 620
PciSI GCTCTTC 1 cut(s) 166
PcsI WCGNNNNNNNCGW 6 cut(s) 108, 186, 279, 372, 483, 492
PfeI GAWTC 1 cut(s) 355
Pfl23II CGTACG 1 cut(s) 483
PfoI TCCNGGA 1 cut(s) 297
PinAI ACCGGT 1 cut(s) 423
PkrI GCNGC 5 cut(s) 106, 158, 216, 260, 372
PleI GAGTC 2 cut(s) 440, 487
PmaCI CACGTG 2 cut(s) 310, 376
PmlI CACGTG 2 cut(s) 310, 376
PpsI GAGTC 2 cut(s) 440, 487
Ppu21I YACGTR 3 cut(s) 310, 376, 487
Psp6I CCWGG 1 cut(s) 90
PspCI CACGTG 2 cut(s) 310, 376
PspGI CCWGG 1 cut(s) 90
PspLI CGTACG 1 cut(s) 483
PspN4I GGNNCC 5 cut(s) 144, 186, 334, 404, 466
PspPI GGNCC 6 cut(s) 204, 304, 333, 403, 426, 465
RsaI GTAC 2 cut(s) 485, 498
RsaNI GTAC 2 cut(s) 484, 497
RseI CAYNNNNRTG 1 cut(s) 545
Rsr2I CGGWCCG 1 cut(s) 426
RsrII CGGWCCG 1 cut(s) 426
SapI GCTCTTC 1 cut(s) 166
SatI GCNGC 5 cut(s) 105, 157, 215, 259, 371
Sau3AI GATC 2 cut(s) 378, 576
Sau96I GGNCC 6 cut(s) 204, 304, 333, 403, 426, 465
SchI GAGTC 2 cut(s) 440, 488
ScrFI CCNGG 3 cut(s) 92, 299, 504
SduI GDGCHC 1 cut(s) 293
SinI GGWCC 6 cut(s) 204, 304, 333, 403, 426, 465
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 2 cut(s) 251, 350
SmoI CTYRAG 2 cut(s) 251, 350
Sse9I AATT 4 cut(s) 17, 43, 80, 543
SsiI CCGC 8 cut(s) 57, 105, 214, 329, 370, 399, 500, 581
StyD4I CCNGG 3 cut(s) 90, 297, 502
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 7 cut(s) 267, 288, 312, 378, 489, 498, 527
TaqI TCGA 5 cut(s) 111, 180, 222, 270, 477
TasI AATT 4 cut(s) 17, 43, 80, 543
TauI GCSGC 3 cut(s) 107, 217, 373
TfiI GAWTC 1 cut(s) 355
TscAI CASTG 2 cut(s) 158, 444
TseI GCWGC 2 cut(s) 156, 258
TspGWI ACGGA 6 cut(s) 154, 196, 288, 356, 418, 471
TspRI CASTG 2 cut(s) 158, 444
VpaK11BI GGWCC 6 cut(s) 204, 304, 333, 403, 426, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.