FvH4_7g25180

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012881
Physical Location & Seq
Reverse (-)
19252152 .. 19253936
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25180.t1

Sequence Viewer

Length: 654 bp
ATGCCTTCCTCAGTTCAGCTCCAGAGAATCAACTCCCCTAACCCAATAACAACCGCGGCGGCCGCGGCCATCAGCCACAAACAGTCCCAAGCCGTCACCCGCCTGCAGGTCCTTCCTCTTTCCCCACGCGCCGTCAACATACCGGACTCCGTGGCCGTCCACCACGCGTACTCGGCCATGGCCTTGCCGAACCAGTGCTGCTCCGTGGTGGTGCAGAACATTGACGCCCCCGTCCCTTCCGTGTGGTCCGTCGTGCGCCGCTTCGACAACCCACAAGCCTACAAGCACTTCCTCAAGAGCTGCCACGTCATCGGCGGAGACCCCGCCAAGGTCGGCACGCTCCGGGAGGTGCTCGTGGTGTCGGGCCTCCCCGCGGCCTCCAGCACCGAGAGACTCGAGATTCTGGACGACGAGCGTCACGTGCTCAGCTTCAGCGTCGTCGGCGGGGACCACCGCCTGAGGAACTACCGCTCCGTCACGACACTACACGCTTCTTCGAACGGCACCGGAACCGTAGTCGTGGAGTCGTACGTCGTCGACGTGCCGGCGGGGAACACGAAAGAGGAGACCTGCGTGTTTGCGGACACCATCGTACGTTGTAACTTGCAGTCGTTGGCTCAGATCGCCGAGAGTATGAGCAAAGCTCCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

218

Amino Acids

23.26

Weight (kDa)

7.08

Isoelectric Point (pI)

58.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 70 - 210 4e-16 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05440
fragaria_vesca FvH4_7g25180
malus_domestica MD01G1158500.v1.1 MD07G1227100.v1.1
prunus_persica Prupe.2G256700_v2.0.a1
pyrus_communis pycom07g20570
rosa_chinensis RchiOBHm_Chr1g0371101
rosa_laevigata RLG00000026987
rosa_multiflora Rmu_co8363357.1_g000001 Rmu_sc0001018.1_g000033 Rmu_sc0003714.1_g000007
rosa_roxburghii Rroxscaffold_4G00286000
rosa_rugosa Rorug01G0361300
rosa_samantha Rh1AG371600 Rh1BG334900 Rh1CG348300 Rh1DG366200
rosa_wichuraiana Rw1G032680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
Acc36I ACCTGC 2 cut(s) 97, 578
AccB1I GGYRCC 1 cut(s) 503
AccBSI CCGCTC 1 cut(s) 471
AccI GTMKAC 1 cut(s) 537
AccII CGCG 5 cut(s) 56, 65, 129, 167, 374
AcoI YGGCCR 4 cut(s) 60, 66, 153, 174
AcuI CTGAAG 1 cut(s) 415
AcvI CACGTG 1 cut(s) 421
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 3 cut(s) 170, 530, 594
AfiI CCNNNNNNNGG 3 cut(s) 106, 328, 373
AflIII ACRYGT 1 cut(s) 165
AjiI CACGTC 2 cut(s) 307, 541
AloI GAACNNNNNNTCC 2 cut(s) 455, 487
AluBI AGCT 4 cut(s) 19, 300, 429, 644
AluI AGCT 4 cut(s) 19, 300, 429, 644
Alw21I GWGCWC 2 cut(s) 354, 426
Alw26I GTCTC 3 cut(s) 312, 385, 560
Ama87I CYCGRG 1 cut(s) 395
AoxI GGCC 7 cut(s) 60, 66, 153, 174, 180, 364, 375
ApeKI GCWGC 2 cut(s) 198, 300
AspLEI GCGC 2 cut(s) 131, 258
AspS9I GGNCC 4 cut(s) 109, 246, 364, 448
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 497
AvaI CYCGRG 1 cut(s) 395
AvaII GGWCC 3 cut(s) 109, 246, 448
AxyI CCTNAGG 1 cut(s) 458
BanI GGYRCC 1 cut(s) 503
BauI CACGAG 1 cut(s) 353
BbrPI CACGTG 1 cut(s) 421
Bbv12I GWGCWC 2 cut(s) 354, 426
BbvI GCAGC 2 cut(s) 185, 287
BccI CCATC 2 cut(s) 77, 596
BceAI ACGGC 4 cut(s) 77, 116, 140, 517
BcnI CCSGG 1 cut(s) 344
BcoDI GTCTC 3 cut(s) 312, 385, 560
BfmI CTRYAG 1 cut(s) 104
BfuAI ACCTGC 2 cut(s) 97, 578
BisI GCNGC 8 cut(s) 57, 60, 63, 66, 199, 259, 301, 375
BlpI GCTNAGC 1 cut(s) 425
BlsI GCNGC 8 cut(s) 58, 61, 64, 67, 200, 260, 302, 376
Bme1390I CCNGG 1 cut(s) 344
Bme18I GGWCC 3 cut(s) 109, 246, 448
BmeT110I CYCGRG 1 cut(s) 395
BmgBI CACGTC 2 cut(s) 307, 541
BmgT120I GGNCC 4 cut(s) 109, 246, 364, 448
BmiI GGNNCC 3 cut(s) 449, 505, 511
BmrFI CCNGG 1 cut(s) 344
BoxI GACNNNNGTC 1 cut(s) 414
BplI GAGNNNNNCTC 1 cut(s) 628
BpmI CTGGAG 3 cut(s) 5, 364, 630
Bpu1102I GCTNAGC 1 cut(s) 425
Bpu14I TTCGAA 1 cut(s) 497
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 344
BsaAI YACGTR 1 cut(s) 421
BsaHI GRCGYC 1 cut(s) 225
BsaI GGTCTC 2 cut(s) 312, 560
BsaJI CCNNGG 7 cut(s) 54, 63, 150, 177, 204, 327, 372
BsaWI WCCGGW 2 cut(s) 142, 506
BsaXI ACNNNNNCTCC 2 cut(s) 455, 485
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 328, 373
Bse118I RCCGGY 1 cut(s) 544
Bse1I ACTGG 1 cut(s) 193
Bse21I CCTNAGG 1 cut(s) 458
BseDI CCNNGG 7 cut(s) 54, 63, 150, 177, 204, 327, 372
BseLI CCNNNNNNNGG 3 cut(s) 106, 328, 373
BseMII CTCAG 4 cut(s) 24, 439, 449, 632
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 578
BseX3I CGGCCG 1 cut(s) 60
BseXI GCAGC 2 cut(s) 185, 287
BsgI GTGCAG 1 cut(s) 233
Bsh1236I CGCG 5 cut(s) 56, 65, 129, 167, 374
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 7 cut(s) 62, 68, 155, 176, 182, 366, 377
BshNI GGYRCC 1 cut(s) 503
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 2 cut(s) 354, 426
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 4 cut(s) 143, 343, 507, 545
BsiWI CGTACG 2 cut(s) 528, 592
BslFI GGGAC 3 cut(s) 70, 218, 461
BslI CCNNNNNNNGG 3 cut(s) 106, 328, 373
BsmAI GTCTC 3 cut(s) 312, 385, 560
BsmFI GGGAC 3 cut(s) 70, 218, 461
BsnI GGCC 7 cut(s) 62, 68, 155, 176, 182, 366, 377
Bso31I GGTCTC 2 cut(s) 312, 560
BsoBI CYCGRG 1 cut(s) 395
Bsp119I TTCGAA 1 cut(s) 497
Bsp1286I GDGCHC 2 cut(s) 354, 426
Bsp143I GATC 1 cut(s) 621
Bsp1720I GCTNAGC 1 cut(s) 425
Bsp19I CCATGG 1 cut(s) 177
BspANI GGCC 7 cut(s) 62, 68, 155, 176, 182, 366, 377
BspCNI CTCAG 4 cut(s) 23, 438, 450, 631
BspFNI CGCG 5 cut(s) 56, 65, 129, 167, 374
BspLI GGNNCC 3 cut(s) 449, 505, 511
BspMAI CTGCAG 1 cut(s) 108
BspMI ACCTGC 2 cut(s) 97, 578
BspT104I TTCGAA 1 cut(s) 497
BspT107I GGYRCC 1 cut(s) 503
BspTNI GGTCTC 2 cut(s) 312, 560
BsrBI CCGCTC 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 544
BsrI ACTGG 1 cut(s) 193
BssAI RCCGGY 1 cut(s) 544
BssECI CCNNGG 7 cut(s) 54, 63, 150, 177, 204, 327, 372
BssMI GATC 1 cut(s) 621
BssNI GRCGYC 1 cut(s) 225
BssSI CACGAG 1 cut(s) 353
BssT1I CCWWGG 2 cut(s) 177, 327
Bst2BI CACGAG 1 cut(s) 353
Bst4CI ACNGT 2 cut(s) 84, 514
BstACI GRCGYC 1 cut(s) 225
BstBAI YACGTR 1 cut(s) 421
BstBI TTCGAA 1 cut(s) 497
BstC8I GCNNGC 3 cut(s) 104, 338, 546
BstDEI CTNAG 4 cut(s) 10, 425, 458, 618
BstDSI CCRYGG 6 cut(s) 54, 63, 150, 177, 204, 372
BstFNI CGCG 5 cut(s) 56, 65, 129, 167, 374
BstHHI GCGC 2 cut(s) 131, 258
BstKTI GATC 1 cut(s) 624
BstMAI GTCTC 3 cut(s) 312, 385, 560
BstMBI GATC 1 cut(s) 621
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 6 cut(s) 62, 65, 173, 421, 441, 623
BstPAI GACNNNNGTC 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 342
BstSFI CTRYAG 1 cut(s) 104
BstUI CGCG 5 cut(s) 56, 65, 129, 167, 374
BstV1I GCAGC 2 cut(s) 185, 287
BstZI CGGCCG 1 cut(s) 60
Bsu36I CCTNAGG 1 cut(s) 458
BsuRI GGCC 7 cut(s) 62, 68, 155, 176, 182, 366, 377
BtgI CCRYGG 6 cut(s) 54, 63, 150, 177, 204, 372
BtrI CACGTC 2 cut(s) 307, 541
BtsIMutI CAGTG 1 cut(s) 200
BveI ACCTGC 2 cut(s) 97, 578
Cac8I GCNNGC 3 cut(s) 104, 338, 546
CciNI GCGGCCGC 1 cut(s) 60
CfoI GCGC 2 cut(s) 131, 258
Cfr10I RCCGGY 1 cut(s) 544
Cfr13I GGNCC 4 cut(s) 109, 246, 364, 448
Cfr42I CCGCGG 3 cut(s) 57, 66, 375
CseI GACGC 3 cut(s) 233, 404, 424
Csp6I GTAC 3 cut(s) 169, 529, 593
CviAII CATG 1 cut(s) 178
CviQI GTAC 3 cut(s) 169, 529, 593
DdeI CTNAG 4 cut(s) 10, 425, 458, 618
DpnI GATC 1 cut(s) 623
DpnII GATC 1 cut(s) 621
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
EaeI YGGCCR 4 cut(s) 60, 66, 153, 174
EagI CGGCCG 1 cut(s) 60
EciI GGCGGA 1 cut(s) 330
EclXI CGGCCG 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 177, 327
Eco31I GGTCTC 2 cut(s) 312, 560
Eco47I GGWCC 3 cut(s) 109, 246, 448
Eco52I CGGCCG 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 415
Eco72I CACGTG 1 cut(s) 421
Eco81I CCTNAGG 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 395
EcoO109I RGGNCCY 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 177, 327
ErhI CCWWGG 2 cut(s) 177, 327
FaeI CATG 1 cut(s) 181
FaiI YATR 3 cut(s) 140, 179, 635
FaqI GGGAC 3 cut(s) 70, 218, 461
FatI CATG 1 cut(s) 177
FauI CCCGC 5 cut(s) 107, 331, 379, 437, 541
FblI GTMKAC 1 cut(s) 537
Fnu4HI GCNGC 8 cut(s) 57, 60, 63, 66, 199, 259, 301, 375
Fsp4HI GCNGC 8 cut(s) 57, 60, 63, 66, 199, 259, 301, 375
GlaI GCGC 2 cut(s) 130, 257
GluI GCNGC 8 cut(s) 57, 60, 63, 66, 199, 259, 301, 375
GsuI CTGGAG 3 cut(s) 5, 364, 630
HaeIII GGCC 7 cut(s) 62, 68, 155, 176, 182, 366, 377
HapII CCGG 4 cut(s) 143, 343, 507, 545
HgaI GACGC 3 cut(s) 233, 404, 424
HhaI GCGC 2 cut(s) 131, 258
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 1 cut(s) 181
Hin6I GCGC 2 cut(s) 129, 256
HinP1I GCGC 2 cut(s) 129, 256
HincII GTYRAC 2 cut(s) 136, 538
HindII GTYRAC 2 cut(s) 136, 538
HinfI GANTC 5 cut(s) 27, 146, 393, 400, 524
HpaII CCGG 4 cut(s) 143, 343, 507, 545
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 3 cut(s) 136, 160, 538
Hpy188I TCNGA 1 cut(s) 621
Hpy188III TCNNGA 6 cut(s) 22, 295, 397, 404, 478, 647
Hpy8I GTNNAC 3 cut(s) 136, 160, 538
Hpy99I CGWCG 7 cut(s) 254, 413, 440, 443, 536, 539, 542
HpyAV CCTTC 3 cut(s) 15, 122, 246
HpyCH4III ACNGT 2 cut(s) 84, 514
HpyCH4IV ACGT 5 cut(s) 306, 420, 531, 540, 595
HpyCH4V TGCA 3 cut(s) 106, 214, 607
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 65, 173, 421, 441, 623
HpyF3I CTNAG 4 cut(s) 10, 425, 458, 618
HpySE526I ACGT 5 cut(s) 306, 420, 531, 540, 595
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 1 cut(s) 181
HspAI GCGC 2 cut(s) 129, 256
KroI GCCGGC 1 cut(s) 544
KroNI GCCGGC 1 cut(s) 546
KspI CCGCGG 3 cut(s) 57, 66, 375
Kzo9I GATC 1 cut(s) 621
LmnI GCTCC 5 cut(s) 24, 206, 345, 476, 649
Lsp1109I GCAGC 2 cut(s) 185, 287
MaeII ACGT 5 cut(s) 306, 420, 531, 540, 595
MaeIII GTNAC 4 cut(s) 94, 416, 475, 599
MalI GATC 1 cut(s) 623
MbiI CCGCTC 1 cut(s) 471
MboI GATC 1 cut(s) 621
MboII GAAGA 1 cut(s) 486
MhlI GDGCHC 2 cut(s) 354, 426
MluI ACGCGT 1 cut(s) 165
MlyI GAGTC 3 cut(s) 140, 387, 533
MnlI CCTC 8 cut(s) 19, 126, 302, 340, 377, 388, 453, 556
MroNI GCCGGC 1 cut(s) 544
MspA1I CMGCKG 3 cut(s) 56, 65, 374
MspI CCGG 4 cut(s) 143, 343, 507, 545
MspR9I CCNGG 1 cut(s) 344
MvnI CGCG 5 cut(s) 56, 65, 129, 167, 374
MwoI GCNNNNNNNGC 6 cut(s) 62, 65, 173, 421, 441, 623
NaeI GCCGGC 1 cut(s) 546
NciI CCSGG 1 cut(s) 344
NcoI CCATGG 1 cut(s) 177
NdeII GATC 1 cut(s) 621
NgoMIV GCCGGC 1 cut(s) 544
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 3 cut(s) 449, 505, 511
NmeAIII GCCGAG 2 cut(s) 152, 652
NmuCI GTSAC 3 cut(s) 94, 416, 475
NotI GCGGCCGC 1 cut(s) 60
NspV TTCGAA 1 cut(s) 497
PaeR7I CTCGAG 1 cut(s) 395
PcsI WCGNNNNNNNCGW 2 cut(s) 417, 537
PdiI GCCGGC 1 cut(s) 546
PfeI GAWTC 2 cut(s) 27, 400
Pfl23II CGTACG 2 cut(s) 528, 592
PfoI TCCNGGA 1 cut(s) 342
PkrI GCNGC 8 cut(s) 58, 61, 64, 67, 200, 260, 302, 376
PleI GAGTC 3 cut(s) 140, 387, 532
PmaCI CACGTG 1 cut(s) 421
PmlI CACGTG 1 cut(s) 421
PpsI GAGTC 3 cut(s) 140, 387, 532
Ppu21I YACGTR 1 cut(s) 421
PpuMI RGGWCCY 1 cut(s) 109
PshAI GACNNNNGTC 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 109
PspCI CACGTG 1 cut(s) 421
PspLI CGTACG 2 cut(s) 528, 592
PspN4I GGNNCC 3 cut(s) 449, 505, 511
PspPI GGNCC 4 cut(s) 109, 246, 364, 448
PspPPI RGGWCCY 1 cut(s) 109
PstI CTGCAG 1 cut(s) 108
RsaI GTAC 3 cut(s) 170, 530, 594
RsaNI GTAC 3 cut(s) 169, 529, 593
SacII CCGCGG 3 cut(s) 57, 66, 375
SalI GTCGAC 1 cut(s) 536
SatI GCNGC 8 cut(s) 57, 60, 63, 66, 199, 259, 301, 375
Sau3AI GATC 1 cut(s) 621
Sau96I GGNCC 4 cut(s) 109, 246, 364, 448
SbfI CCTGCAGG 1 cut(s) 108
SchI GAGTC 3 cut(s) 140, 387, 533
ScrFI CCNGG 1 cut(s) 344
SdaI CCTGCAGG 1 cut(s) 108
SduI GDGCHC 2 cut(s) 354, 426
SfcI CTRYAG 1 cut(s) 104
Sfr274I CTCGAG 1 cut(s) 395
Sfr303I CCGCGG 3 cut(s) 57, 66, 375
SfuI TTCGAA 1 cut(s) 497
SgrBI CCGCGG 3 cut(s) 57, 66, 375
SgrDI CGTCGACG 1 cut(s) 536
SinI GGWCC 3 cut(s) 109, 246, 448
SlaI CTCGAG 1 cut(s) 395
SmlI CTYRAG 2 cut(s) 293, 395
SmoI CTYRAG 2 cut(s) 293, 395
Sse8387I CCTGCAGG 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 342
StyI CCWWGG 2 cut(s) 177, 327
TaaI ACNGT 2 cut(s) 84, 514
TaiI ACGT 5 cut(s) 309, 423, 534, 543, 598
TaqI TCGA 4 cut(s) 264, 396, 497, 537
TauI GCSGC 6 cut(s) 59, 62, 65, 68, 261, 377
TfiI GAWTC 2 cut(s) 27, 400
TscAI CASTG 1 cut(s) 200
TseFI GTSAC 3 cut(s) 94, 416, 475
TseI GCWGC 2 cut(s) 198, 300
Tsp45I GTSAC 3 cut(s) 94, 416, 475
TspGWI ACGGA 5 cut(s) 139, 193, 229, 238, 463
TspRI CASTG 1 cut(s) 200
VpaK11BI GGWCC 3 cut(s) 109, 246, 448
XhoI CTCGAG 1 cut(s) 395
XmiI GTMKAC 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.