Rorug01G0361300

DNA repair and recombination protein RAD54-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005309
Physical Location & Seq
Reverse (-)
47672043 .. 47676133
4091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0361300.1

Sequence Viewer

Length: 1770 bp
ATGTCTTTCCAACCCAAAAGCTTTTGGATTCCAAGAGATGCTAGCTGTCTAAATGATGGAGAGATGGGCTGTGATAATTCTTCCAGGGTAGAATCAAAGCGTGGTCACCCATGGTATATGGATGCCAATGGACCAGATCTGTTCAACAACAAGAAGCAAGCAATGGAGGCTGTTGATGGCAGGCCAGCGTCAAGAGCTCCAAACTTGGCCGTTGCCCCGTGGGATAACACTTCTGGGTTTCAGACAGTTCCAGGGCAGTTCACTGACCGCCCTTTTGGACAAGAGCCTGGACGGACAGTTAACTTAGTTGATAGAAACATTCAGTCTCTTGGCAGTGGAACTATAAATTTTGGAAGAAAAGGGTTTCAGAATCAATATGGCAATGATCAGTCAGTGGATTTGTCAATGTCCCACACCATCGAAGATCCTTCATCATGTCTCAGTTTTGGTGGAATCAGAAAAGTGAAAGTTAATGAAGTTAAGGACTCTGATAATGCCGTGTCTGCATCTATGGGGCACTCCTACAGAAGGGGAGACAATAATACAATTTCAATGTGTACTACCTATACCAAGAGTGATGAAAACATCATTTCATTAAGTCCACCTTACAATGCTGACGAGAATGCCATCTCATTAGCGACTACTTTTAATAAGGCAGATGACAATTTCATCTCAGTTGGTCATACTTTTGGCAAGGGAGATGACACTTTCATATCGATGGCTCATAATTACAGCAAGGGTGACACTCGTATGTTATCAATGGGTCAGCCCTTTGAGAAGGAGAATGGAAGTTTTATGTCAATTGGTCAGTCATATGAAAAGGGAGATGGCAGTTTCATATCATTAGGTAACTCCTACAACAAAGTGAATGAGAATTTCATTTCTATGGGTCCAGTATATGGTAGAGGAGACGATAATTTGATCTCAGTGGCTCCGACCTATGATAAGCATGCTGATAGCACTATATCAATCGGTCTGACCTATGACAAGGCTGATTCGAATATTTTGCCAATGGGTCCTCCTTATGATAAATCAGATAGAGATCTACCTATGAGTCACAGTTACAATAAGAATGAGAGCAATACCATATCTTTTGGTGGTTTCCATGATGAATCTGAGACAAACCCTTCTGGTGGGATCATCAGTAGCTGTGGTTTGTTGACTTGTAATCAGAACACACCAGCTCACGCATCGGAAGAATCTGGTGTGAGAGGTTCTGATCATCCTGTTGAGACGAAGATGGATGCACATGTAGATGACACTGTGAAAGTTGACTCCAAAACTGTTAATATTCCCAGAGTAAAAGAGCCAAAGACTAAGAAAGCTCCTCCAAACAACTTTCCTTCGAATGTCAAAAGTTTGTTGTCAACTGGTATGTTTGATGGTATTCCTGTGAAGTATTCTTCCTGGTCACGGGAGAAAAACCTAGATGGAATTATCAAAGGGACTGGGTATCTATGCTCTTGTGCTGACTGCAATCACTCAAAGAATTCTATCTTTCAGCCTCTTAATGCTTACGACTTTGAGCGCCATGCTGGTGCCAAGACCAAACATCCCAATAATCACATCTACTTTGAGAATGGAAAGACCATCTATGCAGTAGTTCAAGAGCTGAAGAACACTCCTCAGGACATGCTCTTTGATGCCATCCAAAATGTGACAGGGTCTCAGATTAATCAGAAGAACTTCCGCGTCTGGAAAGCATCATTCCAAGCCGCCAGCCGTGAACTTCAGCGTATCTATGGAAATGAAGTTGCTATACCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0033170 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C Methyltransf_11 Methyltransf_21 SNF2_N

Protein Analysis

589

Amino Acids

64.67

Weight (kDa)

5.87

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 478 - 537 3.9e-12 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1538
AccB7I CCANNNNNTGG 1 cut(s) 899
AccII CGCG 1 cut(s) 1692
AciI CCGC 3 cut(s) 268, 1690, 1716
AclWI GGATC 2 cut(s) 419, 1145
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 3 cut(s) 346, 874, 1489
AcuI CTGAAG 2 cut(s) 1634, 1715
AfaI GTAC 1 cut(s) 559
AfiI CCNNNNNNNGG 4 cut(s) 528, 899, 1133, 1413
AflIII ACRYGT 1 cut(s) 1249
AgsI TTSAA 3 cut(s) 145, 552, 1607
AjnI CCWGG 4 cut(s) 83, 250, 286, 1406
AluBI AGCT 7 cut(s) 21, 45, 197, 1149, 1184, 1325, 1612
AluI AGCT 7 cut(s) 21, 45, 197, 1149, 1184, 1325, 1612
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 7 cut(s) 330, 443, 528, 903, 1112, 1226, 1671
AlwI GGATC 2 cut(s) 419, 1145
AlwNI CAGNNNCTG 1 cut(s) 1149
AoxI GGCC 2 cut(s) 182, 207
ApoI RAATTY 3 cut(s) 346, 874, 1489
ArsI GACNNNNNNTTYG 4 cut(s) 257, 289, 1622, 1654
AseI ATTAAT 1 cut(s) 1674
Asp700I GAANNNNTTC 1 cut(s) 1685
AspLEI GCGC 1 cut(s) 1530
AspS9I GGNCC 3 cut(s) 131, 890, 1016
AsuHPI GGTGA 2 cut(s) 98, 752
AsuII TTCGAA 2 cut(s) 998, 1346
AsuNHI GCTAGC 1 cut(s) 41
AvaII GGWCC 3 cut(s) 131, 890, 1016
AxyI CCTNAGG 1 cut(s) 1626
BaeGI GKGCMC 1 cut(s) 519
BanI GGYRCC 1 cut(s) 1538
BanII GRGCYC 1 cut(s) 199
BarI GAAGNNNNNNTAC 1 cut(s) 1743
Bbv12I GWGCWC 1 cut(s) 199
BceAI ACGGC 3 cut(s) 194, 482, 1707
BcgI CGANNNNNNTGC 2 cut(s) 988, 1022
BciT130I CCWGG 4 cut(s) 85, 252, 288, 1408
BclI TGATCA 2 cut(s) 385, 1219
BcoDI GTCTC 7 cut(s) 330, 443, 528, 903, 1112, 1226, 1671
BfaI CTAG 2 cut(s) 42, 1427
BfmI CTRYAG 1 cut(s) 523
BfoI RGCGCY 1 cut(s) 1531
BglII AGATCT 2 cut(s) 136, 1042
BisI GCNGC 1 cut(s) 1716
BlsI GCNGC 1 cut(s) 1717
Bme1390I CCNGG 4 cut(s) 85, 252, 288, 1408
Bme18I GGWCC 3 cut(s) 131, 890, 1016
BmgT120I GGNCC 3 cut(s) 131, 890, 1016
BmiI GGNNCC 4 cut(s) 891, 933, 1017, 1540
BmrFI CCNGG 4 cut(s) 85, 252, 288, 1408
BmrI ACTGGG 1 cut(s) 1458
BmsI GCATC 7 cut(s) 28, 112, 515, 1199, 1234, 1633, 1712
BmtI GCTAGC 1 cut(s) 45
BmuI ACTGGG 1 cut(s) 1458
Bpu14I TTCGAA 2 cut(s) 998, 1346
Bsa29I ATCGAT 1 cut(s) 716
BsaBI GATNNNNATC 1 cut(s) 1041
BsaI GGTCTC 1 cut(s) 1671
BsaJI CCNNGG 4 cut(s) 84, 110, 218, 251
Bsc4I CCNNNNNNNGG 4 cut(s) 528, 899, 1133, 1413
Bse1I ACTGG 3 cut(s) 893, 1375, 1453
Bse21I CCTNAGG 1 cut(s) 1626
Bse3DI GCAATG 2 cut(s) 168, 388
Bse8I GATNNNNATC 1 cut(s) 1041
BseBI CCWGG 4 cut(s) 85, 252, 288, 1408
BseCI ATCGAT 1 cut(s) 716
BseDI CCNNGG 4 cut(s) 84, 110, 218, 251
BseGI GGATG 5 cut(s) 127, 1222, 1249, 1552, 1647
BseJI GATNNNNATC 1 cut(s) 1041
BseLI CCNNNNNNNGG 4 cut(s) 528, 899, 1133, 1413
BseMI GCAATG 2 cut(s) 168, 388
BseMII CTCAG 6 cut(s) 454, 687, 939, 1107, 1640, 1682
BseNI ACTGG 3 cut(s) 893, 1375, 1453
BseRI GAGGAG 3 cut(s) 921, 1317, 1614
BseSI GKGCMC 1 cut(s) 519
Bsh1236I CGCG 1 cut(s) 1692
BshFI GGCC 2 cut(s) 184, 209
BshNI GGYRCC 1 cut(s) 1538
BshVI ATCGAT 1 cut(s) 716
BsiHKAI GWGCWC 1 cut(s) 199
BslFI GGGAC 2 cut(s) 394, 1459
BslI CCNNNNNNNGG 4 cut(s) 528, 899, 1133, 1413
BsmAI GTCTC 7 cut(s) 330, 443, 528, 903, 1112, 1226, 1671
BsmBI CGTCTC 2 cut(s) 903, 1226
BsmFI GGGAC 2 cut(s) 394, 1459
BsmI GAATGC 1 cut(s) 628
BsnI GGCC 2 cut(s) 184, 209
Bso31I GGTCTC 1 cut(s) 1671
Bsp119I TTCGAA 2 cut(s) 998, 1346
Bsp1286I GDGCHC 2 cut(s) 199, 519
Bsp143I GATC 7 cut(s) 136, 385, 424, 921, 1042, 1137, 1219
Bsp19I CCATGG 1 cut(s) 110
BspACI CCGC 3 cut(s) 268, 1690, 1716
BspANI GGCC 2 cut(s) 184, 209
BspCNI CTCAG 6 cut(s) 453, 686, 938, 1108, 1639, 1681
BspDI ATCGAT 1 cut(s) 716
BspFNI CGCG 1 cut(s) 1692
BspLI GGNNCC 4 cut(s) 891, 933, 1017, 1540
BspOI GCTAGC 1 cut(s) 45
BspPI GGATC 2 cut(s) 419, 1145
BspT104I TTCGAA 2 cut(s) 998, 1346
BspT107I GGYRCC 1 cut(s) 1538
BspTNI GGTCTC 1 cut(s) 1671
BsrDI GCAATG 2 cut(s) 168, 388
BsrI ACTGG 3 cut(s) 893, 1375, 1453
BssECI CCNNGG 4 cut(s) 84, 110, 218, 251
BssMI GATC 7 cut(s) 136, 385, 424, 921, 1042, 1137, 1219
BssT1I CCWWGG 1 cut(s) 110
Bst2UI CCWGG 4 cut(s) 85, 252, 288, 1408
Bst4CI ACNGT 5 cut(s) 247, 298, 1061, 1264, 1285
BstBI TTCGAA 2 cut(s) 998, 1346
BstC8I GCNNGC 6 cut(s) 43, 159, 182, 186, 951, 1720
BstDEI CTNAG 8 cut(s) 304, 440, 673, 925, 1116, 1317, 1626, 1668
BstDSI CCRYGG 2 cut(s) 110, 218
BstEII GGTNACC 1 cut(s) 104
BstENI CCTNNNNNAGG 1 cut(s) 526
BstF5I GGATG 5 cut(s) 127, 1222, 1249, 1552, 1647
BstFNI CGCG 1 cut(s) 1692
BstH2I RGCGCY 1 cut(s) 1531
BstHHI GCGC 1 cut(s) 1530
BstKTI GATC 7 cut(s) 139, 388, 427, 924, 1045, 1140, 1222
BstMAI GTCTC 7 cut(s) 330, 443, 528, 903, 1112, 1226, 1671
BstMBI GATC 7 cut(s) 136, 385, 424, 921, 1042, 1137, 1219
BstMWI GCNNNNNNNGC 3 cut(s) 167, 194, 503
BstNI CCWGG 4 cut(s) 85, 252, 288, 1408
BstNSI RCATGY 3 cut(s) 953, 1253, 1636
BstPI GGTNACC 1 cut(s) 104
BstSCI CCNGG 4 cut(s) 83, 250, 286, 1406
BstSFI CTRYAG 1 cut(s) 523
BstSLI GKGCMC 1 cut(s) 519
BstUI CGCG 1 cut(s) 1692
BstX2I RGATCY 3 cut(s) 136, 424, 1042
BstYI RGATCY 3 cut(s) 136, 424, 1042
Bsu15I ATCGAT 1 cut(s) 716
Bsu36I CCTNAGG 1 cut(s) 1626
BsuRI GGCC 2 cut(s) 184, 209
BsuTUI ATCGAT 1 cut(s) 716
BtgI CCRYGG 2 cut(s) 110, 218
BtsCI GGATG 5 cut(s) 127, 1222, 1249, 1552, 1647
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 5 cut(s) 261, 340, 399, 933, 1260
Cac8I GCNNGC 6 cut(s) 43, 159, 182, 186, 951, 1720
CaiI CAGNNNCTG 1 cut(s) 1149
CfoI GCGC 1 cut(s) 1530
Cfr13I GGNCC 3 cut(s) 131, 890, 1016
ClaI ATCGAT 1 cut(s) 716
CseI GACGC 2 cut(s) 177, 1681
Csp6I GTAC 1 cut(s) 558
CviAII CATG 7 cut(s) 111, 435, 950, 1106, 1250, 1532, 1633
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 8 cut(s) 304, 440, 673, 925, 1116, 1317, 1626, 1668
DpnI GATC 7 cut(s) 138, 387, 426, 923, 1044, 1139, 1221
DpnII GATC 7 cut(s) 136, 385, 424, 921, 1042, 1137, 1219
EaeI YGGCCR 1 cut(s) 207
Ecl136II GAGCTC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 1671
Eco47I GGWCC 3 cut(s) 131, 890, 1016
Eco53kI GAGCTC 1 cut(s) 197
Eco57I CTGAAG 2 cut(s) 1634, 1715
Eco81I CCTNAGG 1 cut(s) 1626
Eco91I GGTNACC 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 526
EcoO109I RGGNCCY 1 cut(s) 1016
EcoO65I GGTNACC 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 1489
EcoRII CCWGG 4 cut(s) 83, 250, 286, 1406
EcoT14I CCWWGG 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 110
Esp3I CGTCTC 2 cut(s) 903, 1226
FaeI CATG 7 cut(s) 114, 438, 953, 1109, 1253, 1535, 1636
FalI AAGNNNNNCTT 2 cut(s) 589, 621
FaqI GGGAC 2 cut(s) 394, 1459
FatI CATG 7 cut(s) 110, 434, 949, 1105, 1249, 1531, 1632
FauNDI CATATG 1 cut(s) 814
FbaI TGATCA 2 cut(s) 385, 1219
Fnu4HI GCNGC 1 cut(s) 1716
FokI GGATG 5 cut(s) 134, 1209, 1256, 1539, 1634
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 1 cut(s) 1716
FspBI CTAG 2 cut(s) 42, 1427
GlaI GCGC 1 cut(s) 1529
GluI GCNGC 1 cut(s) 1716
HaeII RGCGCY 1 cut(s) 1531
HaeIII GGCC 2 cut(s) 184, 209
HgaI GACGC 2 cut(s) 177, 1681
HhaI GCGC 1 cut(s) 1530
Hin1II CATG 7 cut(s) 114, 438, 953, 1109, 1253, 1535, 1636
Hin6I GCGC 1 cut(s) 1528
HinP1I GCGC 1 cut(s) 1528
HincII GTYRAC 4 cut(s) 301, 1161, 1273, 1368
HindII GTYRAC 4 cut(s) 301, 1161, 1273, 1368
HindIII AAGCTT 1 cut(s) 19
HpaI GTTAAC 1 cut(s) 301
HphI GGTGA 2 cut(s) 98, 752
Hpy166II GTNNAC 8 cut(s) 261, 301, 558, 602, 1161, 1273, 1368, 1727
Hpy188III TCNNGA 5 cut(s) 192, 1607, 1628, 1696, 1767
Hpy8I GTNNAC 8 cut(s) 261, 301, 558, 602, 1161, 1273, 1368, 1727
HpyAV CCTTC 5 cut(s) 438, 522, 772, 1137, 1353
HpyCH4III ACNGT 5 cut(s) 247, 298, 1061, 1264, 1285
HpyCH4V TGCA 4 cut(s) 506, 1247, 1476, 1598
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 194, 503
HpyF3I CTNAG 8 cut(s) 304, 440, 673, 925, 1116, 1317, 1626, 1668
Hsp92II CATG 7 cut(s) 114, 438, 953, 1109, 1253, 1535, 1636
HspAI GCGC 1 cut(s) 1528
Ksp22I TGATCA 2 cut(s) 385, 1219
KspAI GTTAAC 1 cut(s) 301
Kzo9I GATC 7 cut(s) 136, 385, 424, 921, 1042, 1137, 1219
LmnI GCTCC 3 cut(s) 202, 937, 1330
LweI GCATC 7 cut(s) 28, 112, 515, 1199, 1234, 1633, 1712
MaeI CTAG 2 cut(s) 42, 1427
MaeIII GTNAC 7 cut(s) 104, 740, 848, 1055, 1061, 1410, 1657
MalI GATC 7 cut(s) 138, 387, 426, 923, 1044, 1139, 1221
MboI GATC 7 cut(s) 136, 385, 424, 921, 1042, 1137, 1219
MboII GAAGA 8 cut(s) 72, 366, 434, 1208, 1249, 1395, 1627, 1693
MfeI CAATTG 1 cut(s) 801
MflI RGATCY 3 cut(s) 136, 424, 1042
MhlI GDGCHC 2 cut(s) 199, 519
MlyI GAGTC 3 cut(s) 479, 1063, 1268
MmeI TCCRAC 2 cut(s) 34, 959
MnlI CCTC 7 cut(s) 160, 899, 1029, 1205, 1338, 1515, 1635
MroXI GAANNNNTTC 1 cut(s) 1685
MseI TTAA 8 cut(s) 300, 471, 480, 596, 648, 1287, 1509, 1674
MslI CAYNNNNRTG 5 cut(s) 716, 749, 884, 1254, 1536
MspR9I CCNGG 4 cut(s) 85, 252, 288, 1408
MunI CAATTG 1 cut(s) 801
Mva1269I GAATGC 1 cut(s) 628
MvaI CCWGG 4 cut(s) 85, 252, 288, 1408
MvnI CGCG 1 cut(s) 1692
MwoI GCNNNNNNNGC 3 cut(s) 167, 194, 503
NcoI CCATGG 1 cut(s) 110
NdeI CATATG 1 cut(s) 814
NdeII GATC 7 cut(s) 136, 385, 424, 921, 1042, 1137, 1219
NheI GCTAGC 1 cut(s) 41
NlaIII CATG 7 cut(s) 114, 438, 953, 1109, 1253, 1535, 1636
NlaIV GGNNCC 4 cut(s) 891, 933, 1017, 1540
NmuCI GTSAC 5 cut(s) 104, 740, 1055, 1410, 1657
NspI RCATGY 3 cut(s) 953, 1253, 1636
NspV TTCGAA 2 cut(s) 998, 1346
PaeI GCATGC 1 cut(s) 953
PciI ACATGT 1 cut(s) 1249
PctI GAATGC 1 cut(s) 628
PdmI GAANNNNTTC 1 cut(s) 1685
PfeI GAWTC 7 cut(s) 28, 92, 370, 453, 995, 1112, 1199
PflFI GACNNNGTC 1 cut(s) 1663
PflMI CCANNNNNTGG 1 cut(s) 899
PkrI GCNGC 1 cut(s) 1717
PleI GAGTC 3 cut(s) 479, 1062, 1268
PpsI GAGTC 3 cut(s) 479, 1062, 1268
PpuMI RGGWCCY 1 cut(s) 1016
PscI ACATGT 1 cut(s) 1249
PshBI ATTAAT 1 cut(s) 1674
Psp124BI GAGCTC 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 1016
Psp6I CCWGG 4 cut(s) 83, 250, 286, 1406
PspEI GGTNACC 1 cut(s) 104
PspGI CCWGG 4 cut(s) 83, 250, 286, 1406
PspN4I GGNNCC 4 cut(s) 891, 933, 1017, 1540
PspPI GGNCC 3 cut(s) 131, 890, 1016
PspPPI RGGWCCY 1 cut(s) 1016
PstNI CAGNNNCTG 1 cut(s) 1149
PsuI RGATCY 3 cut(s) 136, 424, 1042
PsyI GACNNNGTC 1 cut(s) 1663
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
RseI CAYNNNNRTG 5 cut(s) 716, 749, 884, 1254, 1536
SacI GAGCTC 1 cut(s) 199
SaqAI TTAA 8 cut(s) 300, 471, 480, 596, 648, 1287, 1509, 1674
SatI GCNGC 1 cut(s) 1716
Sau3AI GATC 7 cut(s) 136, 385, 424, 921, 1042, 1137, 1219
Sau96I GGNCC 3 cut(s) 131, 890, 1016
SchI GAGTC 3 cut(s) 479, 1063, 1268
ScrFI CCNGG 4 cut(s) 85, 252, 288, 1408
SduI GDGCHC 2 cut(s) 199, 519
SfaNI GCATC 7 cut(s) 28, 112, 515, 1199, 1234, 1633, 1712
SfcI CTRYAG 1 cut(s) 523
SfuI TTCGAA 2 cut(s) 998, 1346
SinI GGWCC 3 cut(s) 131, 890, 1016
SmiMI CAYNNNNRTG 5 cut(s) 716, 749, 884, 1254, 1536
SphI GCATGC 1 cut(s) 953
SsiI CCGC 3 cut(s) 268, 1690, 1716
SspI AATATT 2 cut(s) 1003, 1291
SspMI CTAG 2 cut(s) 42, 1427
SstI GAGCTC 1 cut(s) 199
StyD4I CCNGG 4 cut(s) 83, 250, 286, 1406
StyI CCWWGG 1 cut(s) 110
TaaI ACNGT 5 cut(s) 247, 298, 1061, 1264, 1285
TaqI TCGA 4 cut(s) 420, 716, 998, 1346
TaqII GACCGA 1 cut(s) 962
TatI WGTACW 1 cut(s) 557
TauI GCSGC 1 cut(s) 1718
TfiI GAWTC 7 cut(s) 28, 92, 370, 453, 995, 1112, 1199
Tru1I TTAA 8 cut(s) 300, 471, 480, 596, 648, 1287, 1509, 1674
Tru9I TTAA 8 cut(s) 300, 471, 480, 596, 648, 1287, 1509, 1674
TscAI CASTG 5 cut(s) 268, 340, 399, 933, 1267
TseFI GTSAC 5 cut(s) 104, 740, 1055, 1410, 1657
Tsp45I GTSAC 5 cut(s) 104, 740, 1055, 1410, 1657
TspGWI ACGGA 1 cut(s) 307
TspRI CASTG 5 cut(s) 268, 340, 399, 933, 1267
Tth111I GACNNNGTC 1 cut(s) 1663
Van91I CCANNNNNTGG 1 cut(s) 899
VpaK11BI GGWCC 3 cut(s) 131, 890, 1016
VspI ATTAAT 1 cut(s) 1674
XagI CCTNNNNNAGG 1 cut(s) 526
XapI RAATTY 3 cut(s) 346, 874, 1489
XceI RCATGY 3 cut(s) 953, 1253, 1636
XmnI GAANNNNTTC 1 cut(s) 1685
XspI CTAG 2 cut(s) 42, 1427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.