DNA repair and recombination protein RAD54-like protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G42670 AT3G42670 AT3G42670 AT3G42670 AT5G20420 |
| fragaria_vesca | FvH4_7g25190 FvH4_7g25190 FvH4_7g25190 FvH4_7g25190 FvH4_7g25190 |
| prunus_persica | Prupe.2G256800_v2.0.a1 Prupe.2G256800_v2.0.a1 Prupe.2G256800_v2.0.a1 Prupe.2G256800_v2.0.a1 |
| pyrus_communis | pycom07g20580 |
| rosa_chinensis | RchiOBHm_Chr1g0371111 |
| rosa_laevigata | RLG00000026985 |
| rosa_multiflora | Rmu_sc0003714.1_g000006 |
| rosa_roxburghii | Rroxscaffold_4G00285980 |
| rosa_rugosa | Rorug01G0361300 Rorug01G0361300 Rorug01G0361400 Rorug01G0361500 Rorug01G0361500 |
| rosa_samantha | Rh1AG371800 Rh1BG335000 Rh1CG348400 Rh1DG366300 |
| rosa_wichuraiana | Rw1G032690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1526 |
| Acc36I | ACCTGC | 1 cut(s) | 1526 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2809 |
| AccI | GTMKAC | 3 cut(s) | 1502, 2510, 2971 |
| AciI | CCGC | 1 cut(s) | 859 |
| AcuI | CTGAAG | 4 cut(s) | 462, 1770, 2273, 3477 |
| AfaI | GTAC | 9 cut(s) | 509, 756, 995, 1054, 1339, 2315, 2633, 2668, 3053 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 809, 1445, 2101, 2210, 2347, 2641, 2809 |
| AflII | CTTAAG | 1 cut(s) | 1856 |
| AflIII | ACRYGT | 1 cut(s) | 1897 |
| AgeI | ACCGGT | 1 cut(s) | 2347 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2279 |
| AjnI | CCWGG | 9 cut(s) | 235, 1813, 2203, 2263, 2309, 2591, 3225, 3409, 3553 |
| AleI | CACNNNNGTG | 1 cut(s) | 2004 |
| Alw21I | GWGCWC | 1 cut(s) | 258 |
| Alw26I | GTCTC | 2 cut(s) | 2900, 3283 |
| Ama87I | CYCGRG | 1 cut(s) | 2817 |
| AoxI | GGCC | 6 cut(s) | 233, 931, 947, 2416, 2720, 3551 |
| ApeKI | GCWGC | 3 cut(s) | 1781, 3125, 3476 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1795, 1827, 2531, 2563 |
| AsiGI | ACCGGT | 1 cut(s) | 2347 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 328, 1625, 2258, 2684 |
| AspS9I | GGNCC | 9 cut(s) | 167, 401, 932, 1277, 1524, 1612, 1811, 2417, 2755 |
| AsuC2I | CCSGG | 1 cut(s) | 2967 |
| AsuHPI | GGTGA | 5 cut(s) | 809, 1316, 1772, 3079, 3752 |
| AsuII | TTCGAA | 2 cut(s) | 184, 940 |
| AvaI | CYCGRG | 1 cut(s) | 2817 |
| AvaII | GGWCC | 7 cut(s) | 167, 401, 1277, 1524, 1612, 1811, 2755 |
| AxyI | CCTNAGG | 1 cut(s) | 2579 |
| BaeGI | GKGCMC | 1 cut(s) | 2620 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2459, 2492 |
| BamHI | GGATCC | 2 cut(s) | 747, 3682 |
| BanII | GRGCYC | 1 cut(s) | 2599 |
| BauI | CACGAG | 1 cut(s) | 3540 |
| BbsI | GAAGAC | 5 cut(s) | 1392, 1889, 2544, 3618, 3750 |
| Bbv12I | GWGCWC | 1 cut(s) | 258 |
| BbvI | GCAGC | 3 cut(s) | 1768, 3137, 3463 |
| BccI | CCATC | 7 cut(s) | 150, 703, 838, 1406, 2149, 2803, 3157 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 8, 42, 1310, 1344 |
| BciT130I | CCWGG | 9 cut(s) | 237, 1815, 2205, 2265, 2311, 2593, 3227, 3411, 3555 |
| BciVI | GTATCC | 2 cut(s) | 3072, 3658 |
| BclI | TGATCA | 7 cut(s) | 268, 457, 1201, 1237, 2226, 3084, 3768 |
| BcnI | CCSGG | 1 cut(s) | 2967 |
| BcoDI | GTCTC | 2 cut(s) | 2900, 3283 |
| BfaI | CTAG | 9 cut(s) | 321, 1428, 2459, 2490, 2601, 2607, 3074, 3299, 3483 |
| BfmI | CTRYAG | 4 cut(s) | 2377, 2972, 3123, 3534 |
| BfrI | CTTAAG | 1 cut(s) | 1856 |
| BfuAI | ACCTGC | 1 cut(s) | 1526 |
| BfuI | GTATCC | 2 cut(s) | 3072, 3658 |
| BisI | GCNGC | 4 cut(s) | 860, 1782, 3126, 3477 |
| BlpI | GCTNAGC | 1 cut(s) | 33 |
| BlsI | GCNGC | 4 cut(s) | 861, 1783, 3127, 3478 |
| BmcAI | AGTACT | 3 cut(s) | 509, 1054, 1339 |
| Bme18I | GGWCC | 7 cut(s) | 167, 401, 1277, 1524, 1612, 1811, 2755 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2279 |
| BmeT110I | CYCGRG | 1 cut(s) | 2817 |
| BmgT120I | GGNCC | 9 cut(s) | 167, 401, 932, 1277, 1524, 1612, 1811, 2417, 2755 |
| BmrI | ACTGGG | 2 cut(s) | 1095, 3366 |
| BmuI | ACTGGG | 2 cut(s) | 1095, 3366 |
| BpiI | GAAGAC | 5 cut(s) | 1392, 1889, 2544, 3618, 3750 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 409, 441 |
| BpmI | CTGGAG | 3 cut(s) | 1527, 2226, 3386 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 33 |
| Bpu14I | TTCGAA | 2 cut(s) | 184, 940 |
| BpuEI | CTTGAG | 2 cut(s) | 2556, 3191 |
| BpuMI | CCSGG | 1 cut(s) | 2967 |
| BsaBI | GATNNNNATC | 1 cut(s) | 51 |
| BsaI | GGTCTC | 1 cut(s) | 2900 |
| BsaJI | CCNNGG | 8 cut(s) | 397, 1249, 1273, 2263, 2592, 3066, 3091, 3107 |
| BsaWI | WCCGGW | 2 cut(s) | 304, 2347 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1682, 1697, 1712, 1727 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 809, 1445, 2101, 2210, 2347, 2641, 2809 |
| Bse118I | RCCGGY | 2 cut(s) | 1821, 2347 |
| Bse1I | ACTGG | 5 cut(s) | 370, 1101, 1510, 1615, 3361 |
| Bse21I | CCTNAGG | 1 cut(s) | 2579 |
| Bse3DI | GCAATG | 3 cut(s) | 118, 2229, 3276 |
| Bse8I | GATNNNNATC | 1 cut(s) | 51 |
| BseBI | CCWGG | 9 cut(s) | 237, 1815, 2205, 2265, 2311, 2593, 3227, 3411, 3555 |
| BseDI | CCNNGG | 8 cut(s) | 397, 1249, 1273, 2263, 2592, 3066, 3091, 3107 |
| BseGI | GGATG | 9 cut(s) | 37, 142, 1155, 1399, 1417, 1421, 1468, 2026, 3103 |
| BseJI | GATNNNNATC | 1 cut(s) | 51 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 809, 1445, 2101, 2210, 2347, 2641, 2809 |
| BseMI | GCAATG | 3 cut(s) | 118, 2229, 3276 |
| BseMII | CTCAG | 8 cut(s) | 834, 909, 1047, 1692, 2570, 2897, 3257, 3693 |
| BseNI | ACTGG | 5 cut(s) | 370, 1101, 1510, 1615, 3361 |
| BseRI | GAGGAG | 5 cut(s) | 1697, 1700, 1703, 1718, 1997 |
| BseSI | GKGCMC | 1 cut(s) | 2620 |
| BseXI | GCAGC | 3 cut(s) | 1768, 3137, 3463 |
| BseYI | CCCAGC | 1 cut(s) | 2210 |
| BsgI | GTGCAG | 1 cut(s) | 665 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2368 |
| BshFI | GGCC | 6 cut(s) | 235, 933, 949, 2418, 2722, 3553 |
| BshTI | ACCGGT | 1 cut(s) | 2347 |
| BsiEI | CGRYCG | 1 cut(s) | 2368 |
| BsiHKAI | GWGCWC | 1 cut(s) | 258 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2817 |
| BsiSI | CCGG | 4 cut(s) | 305, 1822, 2348, 2967 |
| BslFI | GGGAC | 1 cut(s) | 3135 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 809, 1445, 2101, 2210, 2347, 2641, 2809 |
| BsmAI | GTCTC | 2 cut(s) | 2900, 3283 |
| BsmFI | GGGAC | 1 cut(s) | 3135 |
| BsmI | GAATGC | 2 cut(s) | 1130, 3758 |
| BsnI | GGCC | 6 cut(s) | 235, 933, 949, 2418, 2722, 3553 |
| Bso31I | GGTCTC | 1 cut(s) | 2900 |
| BsoBI | CYCGRG | 1 cut(s) | 2817 |
| Bsp119I | TTCGAA | 2 cut(s) | 184, 940 |
| Bsp1286I | GDGCHC | 3 cut(s) | 258, 2599, 2620 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 33 |
| Bsp19I | CCATGG | 1 cut(s) | 1273 |
| BspACI | CCGC | 1 cut(s) | 859 |
| BspANI | GGCC | 6 cut(s) | 235, 933, 949, 2418, 2722, 3553 |
| BspCNI | CTCAG | 8 cut(s) | 835, 910, 1048, 1693, 2571, 2898, 3256, 3694 |
| BspHI | TCATGA | 2 cut(s) | 349, 3771 |
| BspMAI | CTGCAG | 1 cut(s) | 3127 |
| BspMI | ACCTGC | 1 cut(s) | 1526 |
| BspQI | GCTCTTC | 1 cut(s) | 193 |
| BspT104I | TTCGAA | 2 cut(s) | 184, 940 |
| BspTI | CTTAAG | 1 cut(s) | 1856 |
| BspTNI | GGTCTC | 1 cut(s) | 2900 |
| BsrDI | GCAATG | 3 cut(s) | 118, 2229, 3276 |
| BsrFI | RCCGGY | 2 cut(s) | 1821, 2347 |
| BsrI | ACTGG | 5 cut(s) | 370, 1101, 1510, 1615, 3361 |
| BssAI | RCCGGY | 2 cut(s) | 1821, 2347 |
| BssECI | CCNNGG | 8 cut(s) | 397, 1249, 1273, 2263, 2592, 3066, 3091, 3107 |
| BssNAI | GTATAC | 2 cut(s) | 1503, 2511 |
| BssSI | CACGAG | 1 cut(s) | 3540 |
| BssT1I | CCWWGG | 6 cut(s) | 397, 1249, 1273, 3066, 3091, 3107 |
| Bst1107I | GTATAC | 2 cut(s) | 1503, 2511 |
| Bst2BI | CACGAG | 1 cut(s) | 3540 |
| Bst2UI | CCWGG | 9 cut(s) | 237, 1815, 2205, 2265, 2311, 2593, 3227, 3411, 3555 |
| Bst4CI | ACNGT | 7 cut(s) | 515, 1005, 1301, 2085, 2366, 3236, 3294 |
| Bst6I | CTCTTC | 4 cut(s) | 8, 193, 1038, 1438 |
| BstAFI | CTTAAG | 1 cut(s) | 1856 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 908, 3131 |
| BstBI | TTCGAA | 2 cut(s) | 184, 940 |
| BstDSI | CCRYGG | 1 cut(s) | 1273 |
| BstF5I | GGATG | 9 cut(s) | 37, 142, 1155, 1399, 1417, 1421, 1468, 2026, 3103 |
| BstMAI | GTCTC | 2 cut(s) | 2900, 3283 |
| BstMCI | CGRYCG | 1 cut(s) | 2368 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 868, 908, 1134, 3131, 3559 |
| BstNI | CCWGG | 9 cut(s) | 237, 1815, 2205, 2265, 2311, 2593, 3227, 3411, 3555 |
| BstNSI | RCATGY | 5 cut(s) | 817, 906, 1901, 2447, 2483 |
| BstSFI | CTRYAG | 4 cut(s) | 2377, 2972, 3123, 3534 |
| BstSLI | GKGCMC | 1 cut(s) | 2620 |
| BstV1I | GCAGC | 3 cut(s) | 1768, 3137, 3463 |
| BstV2I | GAAGAC | 5 cut(s) | 1392, 1889, 2544, 3618, 3750 |
| BstX2I | RGATCY | 8 cut(s) | 301, 747, 1948, 1960, 2135, 2337, 3361, 3682 |
| BstYI | RGATCY | 8 cut(s) | 301, 747, 1948, 1960, 2135, 2337, 3361, 3682 |
| BstZ17I | GTATAC | 2 cut(s) | 1503, 2511 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2579 |
| BsuI | GTATCC | 2 cut(s) | 3072, 3658 |
| BsuRI | GGCC | 6 cut(s) | 235, 933, 949, 2418, 2722, 3553 |
| BtgI | CCRYGG | 1 cut(s) | 1273 |
| BtsCI | GGATG | 9 cut(s) | 37, 142, 1155, 1399, 1417, 1421, 1468, 2026, 3103 |
| BtsI | GCAGTG | 1 cut(s) | 3444 |
| BtsIMutI | CAGTG | 8 cut(s) | 648, 1001, 1108, 1306, 1622, 3000, 3444, 3670 |
| BveI | ACCTGC | 1 cut(s) | 1526 |
| CciI | TCATGA | 2 cut(s) | 349, 3771 |
| Cfr10I | RCCGGY | 2 cut(s) | 1821, 2347 |
| Cfr13I | GGNCC | 9 cut(s) | 167, 401, 932, 1277, 1524, 1612, 1811, 2417, 2755 |
| CseI | GACGC | 2 cut(s) | 860, 1212 |
| CsiI | ACCWGGT | 3 cut(s) | 2309, 3225, 3409 |
| Csp6I | GTAC | 9 cut(s) | 508, 755, 994, 1053, 1338, 2314, 2632, 2667, 3052 |
| CspAI | ACCGGT | 1 cut(s) | 2347 |
| CviQI | GTAC | 9 cut(s) | 508, 755, 994, 1053, 1338, 2314, 2632, 2667, 3052 |
| DraI | TTTAAA | 1 cut(s) | 718 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2279 |
| Eam1104I | CTCTTC | 4 cut(s) | 8, 193, 1038, 1438 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2279 |
| EarI | CTCTTC | 4 cut(s) | 8, 193, 1038, 1438 |
| Eco130I | CCWWGG | 6 cut(s) | 397, 1249, 1273, 3066, 3091, 3107 |
| Eco147I | AGGCCT | 2 cut(s) | 235, 3553 |
| Eco24I | GRGCYC | 1 cut(s) | 2599 |
| Eco31I | GGTCTC | 1 cut(s) | 2900 |
| Eco32I | GATATC | 1 cut(s) | 247 |
| Eco47I | GGWCC | 7 cut(s) | 167, 401, 1277, 1524, 1612, 1811, 2755 |
| Eco57I | CTGAAG | 4 cut(s) | 462, 1770, 2273, 3477 |
| Eco81I | CCTNAGG | 1 cut(s) | 2579 |
| Eco88I | CYCGRG | 1 cut(s) | 2817 |
| EcoO109I | RGGNCCY | 3 cut(s) | 401, 932, 1524 |
| EcoRI | GAATTC | 2 cut(s) | 490, 2321 |
| EcoRII | CCWGG | 9 cut(s) | 235, 1813, 2203, 2263, 2309, 2591, 3225, 3409, 3553 |
| EcoRV | GATATC | 1 cut(s) | 247 |
| EcoT14I | CCWWGG | 6 cut(s) | 397, 1249, 1273, 3066, 3091, 3107 |
| EcoT22I | ATGCAT | 2 cut(s) | 819, 2445 |
| EcoT38I | GRGCYC | 1 cut(s) | 2599 |
| ErhI | CCWWGG | 6 cut(s) | 397, 1249, 1273, 3066, 3091, 3107 |
| FaqI | GGGAC | 1 cut(s) | 3135 |
| FauNDI | CATATG | 2 cut(s) | 1912, 3765 |
| FbaI | TGATCA | 7 cut(s) | 268, 457, 1201, 1237, 2226, 3084, 3768 |
| FblI | GTMKAC | 3 cut(s) | 1502, 2510, 2971 |
| Fnu4HI | GCNGC | 4 cut(s) | 860, 1782, 3126, 3477 |
| FokI | GGATG | 9 cut(s) | 24, 129, 1162, 1406, 1408, 1424, 1455, 2033, 3090 |
| FriOI | GRGCYC | 1 cut(s) | 2599 |
| Fsp4HI | GCNGC | 4 cut(s) | 860, 1782, 3126, 3477 |
| FspBI | CTAG | 9 cut(s) | 321, 1428, 2459, 2490, 2601, 2607, 3074, 3299, 3483 |
| GluI | GCNGC | 4 cut(s) | 860, 1782, 3126, 3477 |
| GsaI | CCCAGC | 1 cut(s) | 2214 |
| GsuI | CTGGAG | 3 cut(s) | 1527, 2226, 3386 |
| HaeIII | GGCC | 6 cut(s) | 235, 933, 949, 2418, 2722, 3553 |
| HapII | CCGG | 4 cut(s) | 305, 1822, 2348, 2967 |
| HgaI | GACGC | 2 cut(s) | 860, 1212 |
| HincII | GTYRAC | 2 cut(s) | 382, 394 |
| HindII | GTYRAC | 2 cut(s) | 382, 394 |
| HinfI | GANTC | 8 cut(s) | 154, 353, 977, 1769, 2540, 2861, 3500, 3511 |
| HpaI | GTTAAC | 1 cut(s) | 394 |
| HpaII | CCGG | 4 cut(s) | 305, 1822, 2348, 2967 |
| HphI | GGTGA | 5 cut(s) | 809, 1316, 1772, 3079, 3752 |
| Hpy166II | GTNNAC | 9 cut(s) | 382, 394, 532, 1503, 1920, 2511, 2554, 2972, 3232 |
| Hpy8I | GTNNAC | 9 cut(s) | 382, 394, 532, 1503, 1920, 2511, 2554, 2972, 3232 |
| Hpy99I | CGWCG | 1 cut(s) | 876 |
| HpyCH4III | ACNGT | 7 cut(s) | 515, 1005, 1301, 2085, 2366, 3236, 3294 |
| HpyCH4IV | ACGT | 2 cut(s) | 2005, 3379 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 868, 908, 1134, 3131, 3559 |
| HpySE526I | ACGT | 2 cut(s) | 2005, 3379 |
| KroI | GCCGGC | 1 cut(s) | 1821 |
| KroNI | GCCGGC | 1 cut(s) | 1823 |
| Ksp22I | TGATCA | 7 cut(s) | 268, 457, 1201, 1237, 2226, 3084, 3768 |
| KspAI | GTTAAC | 1 cut(s) | 394 |
| LguI | GCTCTTC | 1 cut(s) | 193 |
| Lsp1109I | GCAGC | 3 cut(s) | 1768, 3137, 3463 |
| MabI | ACCWGGT | 3 cut(s) | 2309, 3225, 3409 |
| MaeI | CTAG | 9 cut(s) | 321, 1428, 2459, 2490, 2601, 2607, 3074, 3299, 3483 |
| MaeII | ACGT | 2 cut(s) | 2005, 3379 |
| MaeIII | GTNAC | 4 cut(s) | 601, 1103, 2401, 3238 |
| MflI | RGATCY | 8 cut(s) | 301, 747, 1948, 1960, 2135, 2337, 3361, 3682 |
| MhlI | GDGCHC | 3 cut(s) | 258, 2599, 2620 |
| MlyI | GAGTC | 3 cut(s) | 347, 2534, 3494 |
| MmeI | TCCRAC | 2 cut(s) | 606, 3477 |
| Mph1103I | ATGCAT | 2 cut(s) | 819, 2445 |
| MroNI | GCCGGC | 1 cut(s) | 1821 |
| MroXI | GAANNNNTTC | 4 cut(s) | 328, 1625, 2258, 2684 |
| MseI | TTAA | 8 cut(s) | 393, 429, 717, 1143, 1529, 1857, 2060, 2328 |
| MslI | CAYNNNNRTG | 2 cut(s) | 147, 2004 |
| MspA1I | CMGCKG | 1 cut(s) | 3476 |
| MspCI | CTTAAG | 1 cut(s) | 1856 |
| MspI | CCGG | 4 cut(s) | 305, 1822, 2348, 2967 |
| Mva1269I | GAATGC | 2 cut(s) | 1130, 3758 |
| MvaI | CCWGG | 9 cut(s) | 237, 1815, 2205, 2265, 2311, 2593, 3227, 3411, 3555 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 868, 908, 1134, 3131, 3559 |
| NaeI | GCCGGC | 1 cut(s) | 1823 |
| NciI | CCSGG | 1 cut(s) | 2967 |
| NcoI | CCATGG | 1 cut(s) | 1273 |
| NdeI | CATATG | 2 cut(s) | 1912, 3765 |
| NgoMIV | GCCGGC | 1 cut(s) | 1821 |
| NmuCI | GTSAC | 1 cut(s) | 1103 |
| NsiI | ATGCAT | 2 cut(s) | 819, 2445 |
| NspI | RCATGY | 5 cut(s) | 817, 906, 1901, 2447, 2483 |
| NspV | TTCGAA | 2 cut(s) | 184, 940 |
| OliI | CACNNNNGTG | 1 cut(s) | 2004 |
| PaeI | GCATGC | 2 cut(s) | 817, 2483 |
| PaeR7I | CTCGAG | 1 cut(s) | 2817 |
| PagI | TCATGA | 2 cut(s) | 349, 3771 |
| PaqCI | CACCTGC | 1 cut(s) | 1526 |
| PceI | AGGCCT | 2 cut(s) | 235, 3553 |
| PciI | ACATGT | 1 cut(s) | 1897 |
| PciSI | GCTCTTC | 1 cut(s) | 193 |
| PctI | GAATGC | 2 cut(s) | 1130, 3758 |
| PdiI | GCCGGC | 1 cut(s) | 1823 |
| PdmI | GAANNNNTTC | 4 cut(s) | 328, 1625, 2258, 2684 |
| PfeI | GAWTC | 5 cut(s) | 154, 977, 1769, 2861, 3511 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2809 |
| PfoI | TCCNGGA | 1 cut(s) | 2203 |
| PinAI | ACCGGT | 1 cut(s) | 2347 |
| PkrI | GCNGC | 4 cut(s) | 861, 1783, 3127, 3478 |
| PleI | GAGTC | 3 cut(s) | 347, 2534, 3494 |
| PpsI | GAGTC | 3 cut(s) | 347, 2534, 3494 |
| PpuMI | RGGWCCY | 2 cut(s) | 401, 1524 |
| PscI | ACATGT | 1 cut(s) | 1897 |
| Psp5II | RGGWCCY | 2 cut(s) | 401, 1524 |
| Psp6I | CCWGG | 9 cut(s) | 235, 1813, 2203, 2263, 2309, 2591, 3225, 3409, 3553 |
| PspFI | CCCAGC | 1 cut(s) | 2210 |
| PspGI | CCWGG | 9 cut(s) | 235, 1813, 2203, 2263, 2309, 2591, 3225, 3409, 3553 |
| PspPI | GGNCC | 9 cut(s) | 167, 401, 932, 1277, 1524, 1612, 1811, 2417, 2755 |
| PspPPI | RGGWCCY | 2 cut(s) | 401, 1524 |
| PspXI | VCTCGAGB | 1 cut(s) | 2817 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3215, 3247 |
| PstI | CTGCAG | 1 cut(s) | 3127 |
| PsuI | RGATCY | 8 cut(s) | 301, 747, 1948, 1960, 2135, 2337, 3361, 3682 |
| PvuII | CAGCTG | 1 cut(s) | 3476 |
| RsaI | GTAC | 9 cut(s) | 509, 756, 995, 1054, 1339, 2315, 2633, 2668, 3053 |
| RsaNI | GTAC | 9 cut(s) | 508, 755, 994, 1053, 1338, 2314, 2632, 2667, 3052 |
| RseI | CAYNNNNRTG | 2 cut(s) | 147, 2004 |
| SapI | GCTCTTC | 1 cut(s) | 193 |
| SaqAI | TTAA | 8 cut(s) | 393, 429, 717, 1143, 1529, 1857, 2060, 2328 |
| SatI | GCNGC | 4 cut(s) | 860, 1782, 3126, 3477 |
| Sau96I | GGNCC | 9 cut(s) | 167, 401, 932, 1277, 1524, 1612, 1811, 2417, 2755 |
| ScaI | AGTACT | 3 cut(s) | 509, 1054, 1339 |
| SchI | GAGTC | 3 cut(s) | 347, 2534, 3494 |
| SduI | GDGCHC | 3 cut(s) | 258, 2599, 2620 |
| SexAI | ACCWGGT | 3 cut(s) | 2309, 3225, 3409 |
| SfcI | CTRYAG | 4 cut(s) | 2377, 2972, 3123, 3534 |
| Sfr274I | CTCGAG | 1 cut(s) | 2817 |
| SfuI | TTCGAA | 2 cut(s) | 184, 940 |
| SinI | GGWCC | 7 cut(s) | 167, 401, 1277, 1524, 1612, 1811, 2755 |
| SlaI | CTCGAG | 1 cut(s) | 2817 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 147, 2004 |
| SmlI | CTYRAG | 4 cut(s) | 1856, 2571, 2817, 3170 |
| SmoI | CTYRAG | 4 cut(s) | 1856, 2571, 2817, 3170 |
| SphI | GCATGC | 2 cut(s) | 817, 2483 |
| SseBI | AGGCCT | 2 cut(s) | 235, 3553 |
| SsiI | CCGC | 1 cut(s) | 859 |
| SspI | AATATT | 1 cut(s) | 2128 |
| SspMI | CTAG | 9 cut(s) | 321, 1428, 2459, 2490, 2601, 2607, 3074, 3299, 3483 |
| StuI | AGGCCT | 2 cut(s) | 235, 3553 |
| StyI | CCWWGG | 6 cut(s) | 397, 1249, 1273, 3066, 3091, 3107 |
| TaaI | ACNGT | 7 cut(s) | 515, 1005, 1301, 2085, 2366, 3236, 3294 |
| TaiI | ACGT | 2 cut(s) | 2008, 3382 |
| TatI | WGTACW | 5 cut(s) | 507, 993, 1052, 1337, 3051 |
| TauI | GCSGC | 1 cut(s) | 862 |
| TfiI | GAWTC | 5 cut(s) | 154, 977, 1769, 2861, 3511 |
| Tru1I | TTAA | 8 cut(s) | 393, 429, 717, 1143, 1529, 1857, 2060, 2328 |
| Tru9I | TTAA | 8 cut(s) | 393, 429, 717, 1143, 1529, 1857, 2060, 2328 |
| TscAI | CASTG | 8 cut(s) | 648, 1008, 1108, 1306, 1622, 3007, 3451, 3670 |
| TseFI | GTSAC | 1 cut(s) | 1103 |
| TseI | GCWGC | 3 cut(s) | 1781, 3125, 3476 |
| Tsp45I | GTSAC | 1 cut(s) | 1103 |
| TspGWI | ACGGA | 1 cut(s) | 1508 |
| TspRI | CASTG | 8 cut(s) | 648, 1008, 1108, 1306, 1622, 3007, 3451, 3670 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2809 |
| Vha464I | CTTAAG | 1 cut(s) | 1856 |
| VpaK11BI | GGWCC | 7 cut(s) | 167, 401, 1277, 1524, 1612, 1811, 2755 |
| XbaI | TCTAGA | 2 cut(s) | 2606, 3298 |
| XceI | RCATGY | 5 cut(s) | 817, 906, 1901, 2447, 2483 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 404 |
| XhoI | CTCGAG | 1 cut(s) | 2817 |
| XmiI | GTMKAC | 3 cut(s) | 1502, 2510, 2971 |
| XmnI | GAANNNNTTC | 4 cut(s) | 328, 1625, 2258, 2684 |
| XspI | CTAG | 9 cut(s) | 321, 1428, 2459, 2490, 2601, 2607, 3074, 3299, 3483 |
| ZrmI | AGTACT | 3 cut(s) | 509, 1054, 1339 |
| Zsp2I | ATGCAT | 2 cut(s) | 819, 2445 |