DNA repair and recombination protein RAD54-like protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G42670 AT3G42670 AT3G42670 AT3G42670 AT5G20420 |
| fragaria_vesca | FvH4_7g25190 FvH4_7g25190 FvH4_7g25190 FvH4_7g25190 FvH4_7g25190 |
| prunus_persica | Prupe.2G256800_v2.0.a1 Prupe.2G256800_v2.0.a1 Prupe.2G256800_v2.0.a1 Prupe.2G256800_v2.0.a1 |
| pyrus_communis | pycom07g20580 |
| rosa_chinensis | RchiOBHm_Chr1g0371111 |
| rosa_laevigata | RLG00000026985 |
| rosa_multiflora | Rmu_sc0003714.1_g000006 |
| rosa_roxburghii | Rroxscaffold_4G00285980 |
| rosa_rugosa | Rorug01G0361300 Rorug01G0361300 Rorug01G0361400 Rorug01G0361500 Rorug01G0361500 |
| rosa_samantha | Rh1AG371800 Rh1BG335000 Rh1CG348400 Rh1DG366300 |
| rosa_wichuraiana | Rw1G032690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1409 |
| Acc36I | ACCTGC | 1 cut(s) | 1409 |
| AccB1I | GGYRCC | 1 cut(s) | 637 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2737 |
| AccI | GTMKAC | 3 cut(s) | 1385, 2408, 2899 |
| AciI | CCGC | 1 cut(s) | 742 |
| AcuI | CTGAAG | 4 cut(s) | 345, 1653, 2171, 3405 |
| AfaI | GTAC | 8 cut(s) | 392, 878, 937, 1222, 2213, 2530, 2596, 2981 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1328, 1999, 2108, 2538, 2737 |
| AflII | CTTAAG | 1 cut(s) | 1739 |
| AflIII | ACRYGT | 2 cut(s) | 1780, 3630 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2177 |
| AjiI | CACGTC | 1 cut(s) | 3631 |
| AjnI | CCWGG | 9 cut(s) | 118, 1696, 2101, 2161, 2207, 2488, 3153, 3337, 3481 |
| AleI | CACNNNNGTG | 1 cut(s) | 1902 |
| Alw26I | GTCTC | 2 cut(s) | 2828, 3211 |
| Ama87I | CYCGRG | 1 cut(s) | 2745 |
| AoxI | GGCC | 6 cut(s) | 116, 814, 830, 2314, 2648, 3479 |
| ApeKI | GCWGC | 4 cut(s) | 1664, 3053, 3404, 3705 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1678, 1710, 2429, 2461 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 211, 1508, 2156, 2612 |
| AspS9I | GGNCC | 9 cut(s) | 50, 284, 815, 1160, 1407, 1495, 1694, 2315, 2683 |
| AsuC2I | CCSGG | 3 cut(s) | 635, 2895, 3286 |
| AsuHPI | GGTGA | 4 cut(s) | 692, 1199, 1655, 3007 |
| AsuII | TTCGAA | 2 cut(s) | 67, 823 |
| AvaI | CYCGRG | 1 cut(s) | 2745 |
| AvaII | GGWCC | 7 cut(s) | 50, 284, 1160, 1407, 1495, 1694, 2683 |
| AxyI | CCTNAGG | 1 cut(s) | 2477 |
| BaeGI | GKGCMC | 1 cut(s) | 2517 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2357, 2390 |
| BamHI | GGATCC | 1 cut(s) | 630 |
| BanI | GGYRCC | 1 cut(s) | 637 |
| BanII | GRGCYC | 1 cut(s) | 2496 |
| BauI | CACGAG | 1 cut(s) | 3468 |
| BbsI | GAAGAC | 4 cut(s) | 1275, 1772, 2442, 3546 |
| BbvI | GCAGC | 3 cut(s) | 1651, 3065, 3391 |
| BccI | CCATC | 6 cut(s) | 586, 721, 1289, 2047, 2731, 3085 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1193, 1227 |
| BciT130I | CCWGG | 9 cut(s) | 120, 1698, 2103, 2163, 2209, 2490, 3155, 3339, 3483 |
| BciVI | GTATCC | 2 cut(s) | 3000, 3586 |
| BclI | TGATCA | 6 cut(s) | 151, 340, 1084, 1120, 2124, 3012 |
| BcnI | CCSGG | 3 cut(s) | 635, 2895, 3286 |
| BcoDI | GTCTC | 2 cut(s) | 2828, 3211 |
| BfaI | CTAG | 9 cut(s) | 204, 1311, 2357, 2388, 2498, 2504, 3002, 3227, 3411 |
| BfmI | CTRYAG | 4 cut(s) | 2275, 2900, 3051, 3462 |
| BfrI | CTTAAG | 1 cut(s) | 1739 |
| BfuAI | ACCTGC | 1 cut(s) | 1409 |
| BfuI | GTATCC | 2 cut(s) | 3000, 3586 |
| BisI | GCNGC | 5 cut(s) | 743, 1665, 3054, 3405, 3706 |
| BlsI | GCNGC | 5 cut(s) | 744, 1666, 3055, 3406, 3707 |
| BmcAI | AGTACT | 3 cut(s) | 392, 937, 1222 |
| Bme18I | GGWCC | 7 cut(s) | 50, 284, 1160, 1407, 1495, 1694, 2683 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2177 |
| BmeT110I | CYCGRG | 1 cut(s) | 2745 |
| BmgBI | CACGTC | 1 cut(s) | 3631 |
| BmgT120I | GGNCC | 9 cut(s) | 50, 284, 815, 1160, 1407, 1495, 1694, 2315, 2683 |
| BmrI | ACTGGG | 1 cut(s) | 978 |
| BmsI | GCATC | 9 cut(s) | 190, 658, 781, 1313, 1634, 2328, 2418, 3374, 3416 |
| BmuI | ACTGGG | 1 cut(s) | 978 |
| BpiI | GAAGAC | 4 cut(s) | 1275, 1772, 2442, 3546 |
| BpmI | CTGGAG | 3 cut(s) | 1410, 2124, 3314 |
| Bpu14I | TTCGAA | 2 cut(s) | 67, 823 |
| BpuEI | CTTGAG | 2 cut(s) | 2454, 3119 |
| BpuMI | CCSGG | 3 cut(s) | 635, 2895, 3286 |
| BsaI | GGTCTC | 1 cut(s) | 2828 |
| BsaJI | CCNNGG | 8 cut(s) | 280, 1132, 2161, 2489, 2994, 3019, 3035, 3285 |
| BsaWI | WCCGGW | 1 cut(s) | 187 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1565, 1580, 1595, 1610 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1328, 1999, 2108, 2538, 2737 |
| Bse1I | ACTGG | 5 cut(s) | 253, 984, 1393, 1498, 2246 |
| Bse21I | CCTNAGG | 1 cut(s) | 2477 |
| Bse3DI | GCAATG | 3 cut(s) | 2127, 2912, 3204 |
| BseBI | CCWGG | 9 cut(s) | 120, 1698, 2103, 2163, 2209, 2490, 3155, 3339, 3483 |
| BseDI | CCNNGG | 8 cut(s) | 280, 1132, 2161, 2489, 2994, 3019, 3035, 3285 |
| BseGI | GGATG | 7 cut(s) | 1038, 1282, 1300, 1304, 1351, 1924, 3031 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1328, 1999, 2108, 2538, 2737 |
| BseMI | GCAATG | 3 cut(s) | 2127, 2912, 3204 |
| BseMII | CTCAG | 6 cut(s) | 717, 792, 930, 1575, 2468, 2825 |
| BseNI | ACTGG | 5 cut(s) | 253, 984, 1393, 1498, 2246 |
| BseRI | GAGGAG | 5 cut(s) | 1580, 1583, 1586, 1601, 1895 |
| BseSI | GKGCMC | 1 cut(s) | 2517 |
| BseXI | GCAGC | 3 cut(s) | 1651, 3065, 3391 |
| BseYI | CCCAGC | 1 cut(s) | 2108 |
| BsgI | GTGCAG | 2 cut(s) | 548, 3706 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2266 |
| BshFI | GGCC | 6 cut(s) | 118, 816, 832, 2316, 2650, 3481 |
| BshNI | GGYRCC | 1 cut(s) | 637 |
| BsiEI | CGRYCG | 1 cut(s) | 2266 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2745 |
| BsiSI | CCGG | 4 cut(s) | 188, 635, 2895, 3285 |
| BslFI | GGGAC | 1 cut(s) | 3063 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1328, 1999, 2108, 2538, 2737 |
| BsmAI | GTCTC | 2 cut(s) | 2828, 3211 |
| BsmFI | GGGAC | 1 cut(s) | 3063 |
| BsmI | GAATGC | 1 cut(s) | 1013 |
| BsnI | GGCC | 6 cut(s) | 118, 816, 832, 2316, 2650, 3481 |
| Bso31I | GGTCTC | 1 cut(s) | 2828 |
| BsoBI | CYCGRG | 1 cut(s) | 2745 |
| Bsp119I | TTCGAA | 2 cut(s) | 67, 823 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2496, 2517 |
| BspACI | CCGC | 1 cut(s) | 742 |
| BspANI | GGCC | 6 cut(s) | 118, 816, 832, 2316, 2650, 3481 |
| BspCNI | CTCAG | 6 cut(s) | 718, 793, 931, 1576, 2469, 2826 |
| BspHI | TCATGA | 1 cut(s) | 232 |
| BspMAI | CTGCAG | 1 cut(s) | 3055 |
| BspMI | ACCTGC | 1 cut(s) | 1409 |
| BspQI | GCTCTTC | 1 cut(s) | 76 |
| BspT104I | TTCGAA | 2 cut(s) | 67, 823 |
| BspT107I | GGYRCC | 1 cut(s) | 637 |
| BspTI | CTTAAG | 1 cut(s) | 1739 |
| BspTNI | GGTCTC | 1 cut(s) | 2828 |
| BsrDI | GCAATG | 3 cut(s) | 2127, 2912, 3204 |
| BsrI | ACTGG | 5 cut(s) | 253, 984, 1393, 1498, 2246 |
| BssECI | CCNNGG | 8 cut(s) | 280, 1132, 2161, 2489, 2994, 3019, 3035, 3285 |
| BssNAI | GTATAC | 2 cut(s) | 1386, 2409 |
| BssSI | CACGAG | 1 cut(s) | 3468 |
| BssT1I | CCWWGG | 5 cut(s) | 280, 1132, 2994, 3019, 3035 |
| Bst1107I | GTATAC | 2 cut(s) | 1386, 2409 |
| Bst2BI | CACGAG | 1 cut(s) | 3468 |
| Bst2UI | CCWGG | 9 cut(s) | 120, 1698, 2103, 2163, 2209, 2490, 3155, 3339, 3483 |
| Bst4CI | ACNGT | 8 cut(s) | 398, 888, 1184, 1983, 2264, 3164, 3222, 3668 |
| Bst6I | CTCTTC | 3 cut(s) | 76, 921, 1321 |
| BstAFI | CTTAAG | 1 cut(s) | 1739 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 791, 3059 |
| BstBI | TTCGAA | 2 cut(s) | 67, 823 |
| BstC8I | GCNNGC | 8 cut(s) | 830, 913, 1261, 1706, 2379, 2728, 3363, 3459 |
| BstDEI | CTNAG | 8 cut(s) | 726, 801, 939, 963, 1584, 1970, 2477, 2834 |
| BstF5I | GGATG | 7 cut(s) | 1038, 1282, 1300, 1304, 1351, 1924, 3031 |
| BstMAI | GTCTC | 2 cut(s) | 2828, 3211 |
| BstMCI | CGRYCG | 1 cut(s) | 2266 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 751, 791, 1017, 3059, 3487 |
| BstNI | CCWGG | 9 cut(s) | 120, 1698, 2103, 2163, 2209, 2490, 3155, 3339, 3483 |
| BstNSI | RCATGY | 5 cut(s) | 700, 789, 1784, 2345, 2381 |
| BstSFI | CTRYAG | 4 cut(s) | 2275, 2900, 3051, 3462 |
| BstSLI | GKGCMC | 1 cut(s) | 2517 |
| BstV1I | GCAGC | 3 cut(s) | 1651, 3065, 3391 |
| BstV2I | GAAGAC | 4 cut(s) | 1275, 1772, 2442, 3546 |
| BstX2I | RGATCY | 7 cut(s) | 184, 630, 1846, 1858, 2033, 2235, 3289 |
| BstYI | RGATCY | 7 cut(s) | 184, 630, 1846, 1858, 2033, 2235, 3289 |
| BstZ17I | GTATAC | 2 cut(s) | 1386, 2409 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2477 |
| BsuI | GTATCC | 2 cut(s) | 3000, 3586 |
| BsuRI | GGCC | 6 cut(s) | 118, 816, 832, 2316, 2650, 3481 |
| BtrI | CACGTC | 1 cut(s) | 3631 |
| BtsCI | GGATG | 7 cut(s) | 1038, 1282, 1300, 1304, 1351, 1924, 3031 |
| BtsI | GCAGTG | 2 cut(s) | 3372, 3689 |
| BtsIMutI | CAGTG | 9 cut(s) | 531, 884, 991, 1189, 1505, 2928, 3257, 3372, 3689 |
| BveI | ACCTGC | 1 cut(s) | 1409 |
| Cac8I | GCNNGC | 8 cut(s) | 830, 913, 1261, 1706, 2379, 2728, 3363, 3459 |
| CciI | TCATGA | 1 cut(s) | 232 |
| Cfr13I | GGNCC | 9 cut(s) | 50, 284, 815, 1160, 1407, 1495, 1694, 2315, 2683 |
| CseI | GACGC | 2 cut(s) | 743, 1095 |
| CsiI | ACCWGGT | 3 cut(s) | 2207, 3153, 3337 |
| Csp6I | GTAC | 8 cut(s) | 391, 877, 936, 1221, 2212, 2529, 2595, 2980 |
| CviQI | GTAC | 8 cut(s) | 391, 877, 936, 1221, 2212, 2529, 2595, 2980 |
| DdeI | CTNAG | 8 cut(s) | 726, 801, 939, 963, 1584, 1970, 2477, 2834 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2177 |
| Eam1104I | CTCTTC | 3 cut(s) | 76, 921, 1321 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2177 |
| EarI | CTCTTC | 3 cut(s) | 76, 921, 1321 |
| Eco130I | CCWWGG | 5 cut(s) | 280, 1132, 2994, 3019, 3035 |
| Eco147I | AGGCCT | 2 cut(s) | 118, 3481 |
| Eco24I | GRGCYC | 1 cut(s) | 2496 |
| Eco31I | GGTCTC | 1 cut(s) | 2828 |
| Eco32I | GATATC | 1 cut(s) | 130 |
| Eco47I | GGWCC | 7 cut(s) | 50, 284, 1160, 1407, 1495, 1694, 2683 |
| Eco57I | CTGAAG | 4 cut(s) | 345, 1653, 2171, 3405 |
| Eco81I | CCTNAGG | 1 cut(s) | 2477 |
| Eco88I | CYCGRG | 1 cut(s) | 2745 |
| EcoO109I | RGGNCCY | 3 cut(s) | 284, 815, 1407 |
| EcoRI | GAATTC | 2 cut(s) | 373, 2219 |
| EcoRII | CCWGG | 9 cut(s) | 118, 1696, 2101, 2161, 2207, 2488, 3153, 3337, 3481 |
| EcoRV | GATATC | 1 cut(s) | 130 |
| EcoT14I | CCWWGG | 5 cut(s) | 280, 1132, 2994, 3019, 3035 |
| EcoT22I | ATGCAT | 2 cut(s) | 702, 2343 |
| EcoT38I | GRGCYC | 1 cut(s) | 2496 |
| ErhI | CCWWGG | 5 cut(s) | 280, 1132, 2994, 3019, 3035 |
| FaqI | GGGAC | 1 cut(s) | 3063 |
| FauNDI | CATATG | 1 cut(s) | 1810 |
| FbaI | TGATCA | 6 cut(s) | 151, 340, 1084, 1120, 2124, 3012 |
| FblI | GTMKAC | 3 cut(s) | 1385, 2408, 2899 |
| Fnu4HI | GCNGC | 5 cut(s) | 743, 1665, 3054, 3405, 3706 |
| FokI | GGATG | 7 cut(s) | 1045, 1289, 1291, 1307, 1338, 1931, 3018 |
| FriOI | GRGCYC | 1 cut(s) | 2496 |
| Fsp4HI | GCNGC | 5 cut(s) | 743, 1665, 3054, 3405, 3706 |
| FspBI | CTAG | 9 cut(s) | 204, 1311, 2357, 2388, 2498, 2504, 3002, 3227, 3411 |
| GluI | GCNGC | 5 cut(s) | 743, 1665, 3054, 3405, 3706 |
| GsaI | CCCAGC | 1 cut(s) | 2112 |
| GsuI | CTGGAG | 3 cut(s) | 1410, 2124, 3314 |
| HaeIII | GGCC | 6 cut(s) | 118, 816, 832, 2316, 2650, 3481 |
| HapII | CCGG | 4 cut(s) | 188, 635, 2895, 3285 |
| HgaI | GACGC | 2 cut(s) | 743, 1095 |
| HincII | GTYRAC | 2 cut(s) | 265, 277 |
| HindII | GTYRAC | 2 cut(s) | 265, 277 |
| HindIII | AAGCTT | 1 cut(s) | 3647 |
| HinfI | GANTC | 7 cut(s) | 236, 860, 1652, 2438, 2789, 3428, 3439 |
| HpaI | GTTAAC | 1 cut(s) | 277 |
| HpaII | CCGG | 4 cut(s) | 188, 635, 2895, 3285 |
| HphI | GGTGA | 4 cut(s) | 692, 1199, 1655, 3007 |
| Hpy166II | GTNNAC | 9 cut(s) | 265, 277, 415, 1386, 1818, 2409, 2452, 2900, 3160 |
| Hpy8I | GTNNAC | 9 cut(s) | 265, 277, 415, 1386, 1818, 2409, 2452, 2900, 3160 |
| Hpy99I | CGWCG | 1 cut(s) | 759 |
| HpyCH4III | ACNGT | 8 cut(s) | 398, 888, 1184, 1983, 2264, 3164, 3222, 3668 |
| HpyCH4IV | ACGT | 3 cut(s) | 1903, 3307, 3630 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 751, 791, 1017, 3059, 3487 |
| HpyF3I | CTNAG | 8 cut(s) | 726, 801, 939, 963, 1584, 1970, 2477, 2834 |
| HpySE526I | ACGT | 3 cut(s) | 1903, 3307, 3630 |
| Ksp22I | TGATCA | 6 cut(s) | 151, 340, 1084, 1120, 2124, 3012 |
| KspAI | GTTAAC | 1 cut(s) | 277 |
| LguI | GCTCTTC | 1 cut(s) | 76 |
| Lsp1109I | GCAGC | 3 cut(s) | 1651, 3065, 3391 |
| LweI | GCATC | 9 cut(s) | 190, 658, 781, 1313, 1634, 2328, 2418, 3374, 3416 |
| MabI | ACCWGGT | 3 cut(s) | 2207, 3153, 3337 |
| MaeI | CTAG | 9 cut(s) | 204, 1311, 2357, 2388, 2498, 2504, 3002, 3227, 3411 |
| MaeII | ACGT | 3 cut(s) | 1903, 3307, 3630 |
| MaeIII | GTNAC | 5 cut(s) | 692, 986, 1783, 2299, 3166 |
| MflI | RGATCY | 7 cut(s) | 184, 630, 1846, 1858, 2033, 2235, 3289 |
| MhlI | GDGCHC | 2 cut(s) | 2496, 2517 |
| MlyI | GAGTC | 3 cut(s) | 230, 2432, 3422 |
| MmeI | TCCRAC | 2 cut(s) | 1172, 3405 |
| Mph1103I | ATGCAT | 2 cut(s) | 702, 2343 |
| MroXI | GAANNNNTTC | 4 cut(s) | 211, 1508, 2156, 2612 |
| MseI | TTAA | 8 cut(s) | 276, 312, 600, 1026, 1412, 1740, 1958, 2226 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1902 |
| MspA1I | CMGCKG | 1 cut(s) | 3404 |
| MspCI | CTTAAG | 1 cut(s) | 1739 |
| MspI | CCGG | 4 cut(s) | 188, 635, 2895, 3285 |
| Mva1269I | GAATGC | 1 cut(s) | 1013 |
| MvaI | CCWGG | 9 cut(s) | 120, 1698, 2103, 2163, 2209, 2490, 3155, 3339, 3483 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 751, 791, 1017, 3059, 3487 |
| NciI | CCSGG | 3 cut(s) | 635, 2895, 3286 |
| NdeI | CATATG | 1 cut(s) | 1810 |
| NmuCI | GTSAC | 2 cut(s) | 692, 986 |
| NsiI | ATGCAT | 2 cut(s) | 702, 2343 |
| NspI | RCATGY | 5 cut(s) | 700, 789, 1784, 2345, 2381 |
| NspV | TTCGAA | 2 cut(s) | 67, 823 |
| OliI | CACNNNNGTG | 1 cut(s) | 1902 |
| PaeI | GCATGC | 1 cut(s) | 2381 |
| PaeR7I | CTCGAG | 1 cut(s) | 2745 |
| PagI | TCATGA | 1 cut(s) | 232 |
| PaqCI | CACCTGC | 1 cut(s) | 1409 |
| PceI | AGGCCT | 2 cut(s) | 118, 3481 |
| PciI | ACATGT | 1 cut(s) | 1780 |
| PciSI | GCTCTTC | 1 cut(s) | 76 |
| PctI | GAATGC | 1 cut(s) | 1013 |
| PdmI | GAANNNNTTC | 4 cut(s) | 211, 1508, 2156, 2612 |
| PfeI | GAWTC | 4 cut(s) | 860, 1652, 2789, 3439 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2737 |
| PfoI | TCCNGGA | 1 cut(s) | 2101 |
| PkrI | GCNGC | 5 cut(s) | 744, 1666, 3055, 3406, 3707 |
| PleI | GAGTC | 3 cut(s) | 230, 2432, 3422 |
| PpsI | GAGTC | 3 cut(s) | 230, 2432, 3422 |
| PpuMI | RGGWCCY | 2 cut(s) | 284, 1407 |
| PscI | ACATGT | 1 cut(s) | 1780 |
| Psp5II | RGGWCCY | 2 cut(s) | 284, 1407 |
| Psp6I | CCWGG | 9 cut(s) | 118, 1696, 2101, 2161, 2207, 2488, 3153, 3337, 3481 |
| PspFI | CCCAGC | 1 cut(s) | 2108 |
| PspGI | CCWGG | 9 cut(s) | 118, 1696, 2101, 2161, 2207, 2488, 3153, 3337, 3481 |
| PspPI | GGNCC | 9 cut(s) | 50, 284, 815, 1160, 1407, 1495, 1694, 2315, 2683 |
| PspPPI | RGGWCCY | 2 cut(s) | 284, 1407 |
| PspXI | VCTCGAGB | 1 cut(s) | 2745 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3143, 3175 |
| PstI | CTGCAG | 1 cut(s) | 3055 |
| PsuI | RGATCY | 7 cut(s) | 184, 630, 1846, 1858, 2033, 2235, 3289 |
| PvuII | CAGCTG | 1 cut(s) | 3404 |
| RsaI | GTAC | 8 cut(s) | 392, 878, 937, 1222, 2213, 2530, 2596, 2981 |
| RsaNI | GTAC | 8 cut(s) | 391, 877, 936, 1221, 2212, 2529, 2595, 2980 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1902 |
| SapI | GCTCTTC | 1 cut(s) | 76 |
| SaqAI | TTAA | 8 cut(s) | 276, 312, 600, 1026, 1412, 1740, 1958, 2226 |
| SatI | GCNGC | 5 cut(s) | 743, 1665, 3054, 3405, 3706 |
| Sau96I | GGNCC | 9 cut(s) | 50, 284, 815, 1160, 1407, 1495, 1694, 2315, 2683 |
| ScaI | AGTACT | 3 cut(s) | 392, 937, 1222 |
| SchI | GAGTC | 3 cut(s) | 230, 2432, 3422 |
| SduI | GDGCHC | 2 cut(s) | 2496, 2517 |
| SexAI | ACCWGGT | 3 cut(s) | 2207, 3153, 3337 |
| SfaNI | GCATC | 9 cut(s) | 190, 658, 781, 1313, 1634, 2328, 2418, 3374, 3416 |
| SfcI | CTRYAG | 4 cut(s) | 2275, 2900, 3051, 3462 |
| Sfr274I | CTCGAG | 1 cut(s) | 2745 |
| SfuI | TTCGAA | 2 cut(s) | 67, 823 |
| SinI | GGWCC | 7 cut(s) | 50, 284, 1160, 1407, 1495, 1694, 2683 |
| SlaI | CTCGAG | 1 cut(s) | 2745 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1902 |
| SmlI | CTYRAG | 4 cut(s) | 1739, 2469, 2745, 3098 |
| SmoI | CTYRAG | 4 cut(s) | 1739, 2469, 2745, 3098 |
| SphI | GCATGC | 1 cut(s) | 2381 |
| SseBI | AGGCCT | 2 cut(s) | 118, 3481 |
| SsiI | CCGC | 1 cut(s) | 742 |
| SspI | AATATT | 2 cut(s) | 2026, 2583 |
| SspMI | CTAG | 9 cut(s) | 204, 1311, 2357, 2388, 2498, 2504, 3002, 3227, 3411 |
| StuI | AGGCCT | 2 cut(s) | 118, 3481 |
| StyI | CCWWGG | 5 cut(s) | 280, 1132, 2994, 3019, 3035 |
| TaaI | ACNGT | 8 cut(s) | 398, 888, 1184, 1983, 2264, 3164, 3222, 3668 |
| TaiI | ACGT | 3 cut(s) | 1906, 3310, 3633 |
| TatI | WGTACW | 5 cut(s) | 390, 876, 935, 1220, 2979 |
| TauI | GCSGC | 1 cut(s) | 745 |
| TfiI | GAWTC | 4 cut(s) | 860, 1652, 2789, 3439 |
| Tru1I | TTAA | 8 cut(s) | 276, 312, 600, 1026, 1412, 1740, 1958, 2226 |
| Tru9I | TTAA | 8 cut(s) | 276, 312, 600, 1026, 1412, 1740, 1958, 2226 |
| TscAI | CASTG | 9 cut(s) | 531, 891, 991, 1189, 1505, 2935, 3257, 3379, 3689 |
| TseFI | GTSAC | 2 cut(s) | 692, 986 |
| TseI | GCWGC | 4 cut(s) | 1664, 3053, 3404, 3705 |
| Tsp45I | GTSAC | 2 cut(s) | 692, 986 |
| TspGWI | ACGGA | 1 cut(s) | 1391 |
| TspRI | CASTG | 9 cut(s) | 531, 891, 991, 1189, 1505, 2935, 3257, 3379, 3689 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2737 |
| Vha464I | CTTAAG | 1 cut(s) | 1739 |
| VpaK11BI | GGWCC | 7 cut(s) | 50, 284, 1160, 1407, 1495, 1694, 2683 |
| XbaI | TCTAGA | 2 cut(s) | 2503, 3226 |
| XceI | RCATGY | 5 cut(s) | 700, 789, 1784, 2345, 2381 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 287 |
| XhoI | CTCGAG | 1 cut(s) | 2745 |
| XmiI | GTMKAC | 3 cut(s) | 1385, 2408, 2899 |
| XmnI | GAANNNNTTC | 4 cut(s) | 211, 1508, 2156, 2612 |
| XspI | CTAG | 9 cut(s) | 204, 1311, 2357, 2388, 2498, 2504, 3002, 3227, 3411 |
| ZrmI | AGTACT | 3 cut(s) | 392, 937, 1222 |
| Zsp2I | ATGCAT | 2 cut(s) | 702, 2343 |