DNA repair and recombination protein RAD54-like protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G42670 AT3G42670 AT3G42670 AT3G42670 AT5G20420 |
| fragaria_vesca | FvH4_7g25190 FvH4_7g25190 FvH4_7g25190 FvH4_7g25190 FvH4_7g25190 |
| prunus_persica | Prupe.2G256800_v2.0.a1 Prupe.2G256800_v2.0.a1 Prupe.2G256800_v2.0.a1 Prupe.2G256800_v2.0.a1 |
| pyrus_communis | pycom07g20580 |
| rosa_chinensis | RchiOBHm_Chr1g0371111 |
| rosa_laevigata | RLG00000026985 |
| rosa_multiflora | Rmu_sc0003714.1_g000006 |
| rosa_roxburghii | Rroxscaffold_4G00285980 |
| rosa_rugosa | Rorug01G0361300 Rorug01G0361300 Rorug01G0361400 Rorug01G0361500 Rorug01G0361500 |
| rosa_samantha | Rh1AG371800 Rh1BG335000 Rh1CG348400 Rh1DG366300 |
| rosa_wichuraiana | Rw1G032690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1122, 1503 |
| AarI | CACCTGC | 2 cut(s) | 299, 1571 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 536 |
| Acc36I | ACCTGC | 4 cut(s) | 299, 679, 1571, 1853 |
| Acc65I | GGTACC | 2 cut(s) | 50, 823 |
| AccB1I | GGYRCC | 4 cut(s) | 50, 412, 823, 1583 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 739, 2896, 3676 |
| AccI | GTMKAC | 1 cut(s) | 807 |
| AccII | CGCG | 2 cut(s) | 2887, 3468 |
| AccIII | TCCGGA | 1 cut(s) | 3330 |
| AciI | CCGC | 6 cut(s) | 141, 301, 1983, 2641, 3468, 3778 |
| AclI | AACGTT | 2 cut(s) | 2109, 2187 |
| AcoI | YGGCCR | 1 cut(s) | 2425 |
| AcuI | CTGAAG | 3 cut(s) | 704, 784, 897 |
| AdeI | CACNNNGTG | 2 cut(s) | 1977, 2799 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 502, 739, 878, 2161, 2270, 2803, 2896, 3676 |
| AflII | CTTAAG | 1 cut(s) | 1573 |
| AflIII | ACRYGT | 2 cut(s) | 514, 2988 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3130 |
| AjiI | CACGTC | 1 cut(s) | 1833 |
| AjnI | CCWGG | 5 cut(s) | 304, 819, 2263, 2323, 3052 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 617, 649, 3390, 3422 |
| Alw21I | GWGCWC | 5 cut(s) | 373, 579, 1832, 2616, 2911 |
| Alw26I | GTCTC | 5 cut(s) | 76, 1072, 1547, 1742, 3370 |
| Alw44I | GTGCAC | 1 cut(s) | 2612 |
| Ama87I | CYCGRG | 2 cut(s) | 2651, 3570 |
| Aor13HI | TCCGGA | 1 cut(s) | 3330 |
| ApaLI | GTGCAC | 1 cut(s) | 2612 |
| ApeKI | GCWGC | 5 cut(s) | 138, 613, 2638, 3212, 3563 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2591, 2623 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 397, 1374, 2774 |
| Asp718I | GGTACC | 2 cut(s) | 50, 823 |
| AspLEI | GCGC | 3 cut(s) | 2887, 2889, 3468 |
| AsuC2I | CCSGG | 4 cut(s) | 862, 2652, 2653, 3642 |
| AsuHPI | GGTGA | 6 cut(s) | 758, 1243, 1379, 1820, 2972, 3487 |
| AsuII | TTCGAA | 2 cut(s) | 2951, 3605 |
| AsuNHI | GCTAGC | 1 cut(s) | 1490 |
| AvaI | CYCGRG | 2 cut(s) | 2651, 3570 |
| AvaII | GGWCC | 8 cut(s) | 884, 1657, 2341, 2845, 2926, 3288, 3514, 3769 |
| BaeGI | GKGCMC | 2 cut(s) | 2616, 2679 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 74, 107, 2396, 2429 |
| BamHI | GGATCC | 2 cut(s) | 1303, 2973 |
| BanI | GGYRCC | 4 cut(s) | 50, 412, 823, 1583 |
| BanII | GRGCYC | 2 cut(s) | 373, 819 |
| BauI | CACGAG | 1 cut(s) | 3627 |
| BbsI | GAAGAC | 5 cut(s) | 532, 2360, 2604, 3614, 3705 |
| Bbv12I | GWGCWC | 5 cut(s) | 373, 579, 1832, 2616, 2911 |
| BbvCI | CCTCAGC | 1 cut(s) | 3543 |
| BbvI | GCAGC | 5 cut(s) | 125, 600, 2625, 3224, 3575 |
| BceAI | ACGGC | 3 cut(s) | 2348, 2412, 2440 |
| BciT130I | CCWGG | 5 cut(s) | 306, 821, 2265, 2325, 3054 |
| BciVI | GTATCC | 1 cut(s) | 1486 |
| BclI | TGATCA | 2 cut(s) | 2286, 3855 |
| BcnI | CCSGG | 4 cut(s) | 862, 2652, 2653, 3642 |
| BcoDI | GTCTC | 5 cut(s) | 76, 1072, 1547, 1742, 3370 |
| BfaI | CTAG | 7 cut(s) | 167, 1482, 1491, 2519, 2666, 3248, 3386 |
| BfmI | CTRYAG | 4 cut(s) | 597, 2437, 3059, 3210 |
| BfrI | CTTAAG | 1 cut(s) | 1573 |
| BfuAI | ACCTGC | 4 cut(s) | 299, 679, 1571, 1853 |
| BfuI | GTATCC | 1 cut(s) | 1486 |
| BisI | GCNGC | 7 cut(s) | 139, 302, 614, 1983, 2639, 3213, 3564 |
| BlsI | GCNGC | 7 cut(s) | 140, 303, 615, 1984, 2640, 3214, 3565 |
| BmcAI | AGTACT | 2 cut(s) | 2664, 2692 |
| Bme1390I | CCNGG | 9 cut(s) | 306, 821, 862, 2265, 2325, 2652, 2653, 3054, 3642 |
| Bme18I | GGWCC | 8 cut(s) | 884, 1657, 2341, 2845, 2926, 3288, 3514, 3769 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3130 |
| BmeT110I | CYCGRG | 2 cut(s) | 2651, 3570 |
| BmgBI | CACGTC | 1 cut(s) | 1833 |
| BmrFI | CCNGG | 9 cut(s) | 306, 821, 862, 2265, 2325, 2652, 2653, 3054, 3642 |
| BmtI | GCTAGC | 1 cut(s) | 1494 |
| BpiI | GAAGAC | 5 cut(s) | 532, 2360, 2604, 3614, 3705 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 400, 432 |
| BpmI | CTGGAG | 4 cut(s) | 954, 2286, 2493, 3176 |
| Bpu10I | CCTNAGC | 4 cut(s) | 945, 1692, 2082, 3543 |
| Bpu14I | TTCGAA | 2 cut(s) | 2951, 3605 |
| BpuEI | CTTGAG | 5 cut(s) | 2297, 2616, 2758, 3278, 3493 |
| BpuMI | CCSGG | 4 cut(s) | 862, 2652, 2653, 3642 |
| BsaAI | YACGTR | 1 cut(s) | 2370 |
| BsaBI | GATNNNNATC | 1 cut(s) | 117 |
| BsaI | GGTCTC | 1 cut(s) | 1547 |
| BsaWI | WCCGGW | 1 cut(s) | 3330 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1561, 1591, 1727, 1757, 3719, 3749, 3758, 3788 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 502, 739, 878, 2161, 2270, 2803, 2896, 3676 |
| Bse118I | RCCGGY | 1 cut(s) | 1869 |
| Bse1I | ACTGG | 5 cut(s) | 1660, 1788, 2408, 2476, 3688 |
| Bse3DI | GCAATG | 4 cut(s) | 427, 2289, 3363, 3621 |
| Bse8I | GATNNNNATC | 1 cut(s) | 117 |
| BseAI | TCCGGA | 1 cut(s) | 3330 |
| BseBI | CCWGG | 5 cut(s) | 306, 821, 2265, 2325, 3054 |
| BseGI | GGATG | 9 cut(s) | 103, 151, 1154, 1174, 1471, 1735, 1908, 2497, 3190 |
| BseJI | GATNNNNATC | 1 cut(s) | 117 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 502, 739, 878, 2161, 2270, 2803, 2896, 3676 |
| BseMI | GCAATG | 4 cut(s) | 427, 2289, 3363, 3621 |
| BseMII | CTCAG | 9 cut(s) | 366, 936, 1038, 1089, 1558, 1683, 2073, 3231, 3534 |
| BseNI | ACTGG | 5 cut(s) | 1660, 1788, 2408, 2476, 3688 |
| BsePI | GCGCGC | 1 cut(s) | 2885 |
| BseRI | GAGGAG | 2 cut(s) | 1582, 1748 |
| BseSI | GKGCMC | 2 cut(s) | 2616, 2679 |
| BseX3I | CGGCCG | 1 cut(s) | 2425 |
| BseXI | GCAGC | 5 cut(s) | 125, 600, 2625, 3224, 3575 |
| BsgI | GTGCAG | 4 cut(s) | 271, 1599, 1830, 1881 |
| Bsh1236I | CGCG | 2 cut(s) | 2887, 3468 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2428 |
| BshNI | GGYRCC | 4 cut(s) | 50, 412, 823, 1583 |
| BsiEI | CGRYCG | 1 cut(s) | 2428 |
| BsiHKAI | GWGCWC | 5 cut(s) | 373, 579, 1832, 2616, 2911 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2651, 3570 |
| BsiSI | CCGG | 5 cut(s) | 861, 1870, 2652, 3331, 3642 |
| BslFI | GGGAC | 5 cut(s) | 409, 1855, 2634, 3624, 3760 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 502, 739, 878, 2161, 2270, 2803, 2896, 3676 |
| BsmAI | GTCTC | 5 cut(s) | 76, 1072, 1547, 1742, 3370 |
| BsmBI | CGTCTC | 1 cut(s) | 1072 |
| BsmFI | GGGAC | 5 cut(s) | 409, 1855, 2634, 3624, 3760 |
| BsmI | GAATGC | 2 cut(s) | 1208, 3758 |
| Bso31I | GGTCTC | 1 cut(s) | 1547 |
| BsoBI | CYCGRG | 2 cut(s) | 2651, 3570 |
| Bsp119I | TTCGAA | 2 cut(s) | 2951, 3605 |
| Bsp1286I | GDGCHC | 7 cut(s) | 373, 579, 819, 1832, 2616, 2679, 2911 |
| Bsp13I | TCCGGA | 1 cut(s) | 3330 |
| Bsp19I | CCATGG | 1 cut(s) | 3142 |
| BspACI | CCGC | 6 cut(s) | 141, 301, 1983, 2641, 3468, 3778 |
| BspCNI | CTCAG | 9 cut(s) | 365, 937, 1037, 1090, 1557, 1684, 2074, 3232, 3535 |
| BspEI | TCCGGA | 1 cut(s) | 3330 |
| BspFNI | CGCG | 2 cut(s) | 2887, 3468 |
| BspHI | TCATGA | 2 cut(s) | 418, 3858 |
| BspMAI | CTGCAG | 3 cut(s) | 601, 3063, 3214 |
| BspMI | ACCTGC | 4 cut(s) | 299, 679, 1571, 1853 |
| BspOI | GCTAGC | 1 cut(s) | 1494 |
| BspQI | GCTCTTC | 1 cut(s) | 1083 |
| BspT104I | TTCGAA | 2 cut(s) | 2951, 3605 |
| BspT107I | GGYRCC | 4 cut(s) | 50, 412, 823, 1583 |
| BspTI | CTTAAG | 1 cut(s) | 1573 |
| BspTNI | GGTCTC | 1 cut(s) | 1547 |
| BsrDI | GCAATG | 4 cut(s) | 427, 2289, 3363, 3621 |
| BsrFI | RCCGGY | 1 cut(s) | 1869 |
| BsrI | ACTGG | 5 cut(s) | 1660, 1788, 2408, 2476, 3688 |
| BssAI | RCCGGY | 1 cut(s) | 1869 |
| BssHII | GCGCGC | 1 cut(s) | 2885 |
| BssSI | CACGAG | 1 cut(s) | 3627 |
| BssT1I | CCWWGG | 8 cut(s) | 466, 955, 1315, 2977, 3142, 3178, 3194, 3291 |
| Bst2BI | CACGAG | 1 cut(s) | 3627 |
| Bst2UI | CCWGG | 5 cut(s) | 306, 821, 2265, 2325, 3054 |
| Bst4CI | ACNGT | 7 cut(s) | 22, 1059, 1403, 2461, 3381, 3393, 3883 |
| Bst6I | CTCTTC | 5 cut(s) | 68, 74, 351, 1083, 3486 |
| BstAFI | CTTAAG | 1 cut(s) | 1573 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 3218, 3277 |
| BstBAI | YACGTR | 1 cut(s) | 2370 |
| BstBI | TTCGAA | 2 cut(s) | 2951, 3605 |
| BstDSI | CCRYGG | 1 cut(s) | 3142 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 500, 876 |
| BstF5I | GGATG | 9 cut(s) | 103, 151, 1154, 1174, 1471, 1735, 1908, 2497, 3190 |
| BstFNI | CGCG | 2 cut(s) | 2887, 3468 |
| BstHHI | GCGC | 3 cut(s) | 2887, 2889, 3468 |
| BstMAI | GTCTC | 5 cut(s) | 76, 1072, 1547, 1742, 3370 |
| BstMCI | CGRYCG | 1 cut(s) | 2428 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 438, 1274, 1491, 2545, 3218, 3268, 3277, 3463, 3503 |
| BstNI | CCWGG | 5 cut(s) | 306, 821, 2265, 2325, 3054 |
| BstNSI | RCATGY | 5 cut(s) | 791, 1076, 2507, 2543, 2992 |
| BstSCI | CCNGG | 9 cut(s) | 304, 819, 860, 2263, 2323, 2650, 2651, 3052, 3640 |
| BstSFI | CTRYAG | 4 cut(s) | 597, 2437, 3059, 3210 |
| BstSLI | GKGCMC | 2 cut(s) | 2616, 2679 |
| BstUI | CGCG | 2 cut(s) | 2887, 3468 |
| BstV1I | GCAGC | 5 cut(s) | 125, 600, 2625, 3224, 3575 |
| BstV2I | GAAGAC | 5 cut(s) | 532, 2360, 2604, 3614, 3705 |
| BstX2I | RGATCY | 5 cut(s) | 1144, 1303, 2195, 2973, 3253 |
| BstYI | RGATCY | 5 cut(s) | 1144, 1303, 2195, 2973, 3253 |
| BstZI | CGGCCG | 1 cut(s) | 2425 |
| BsuI | GTATCC | 1 cut(s) | 1486 |
| BtgI | CCRYGG | 1 cut(s) | 3142 |
| BtrI | CACGTC | 1 cut(s) | 1833 |
| BtsCI | GGATG | 9 cut(s) | 103, 151, 1154, 1174, 1471, 1735, 1908, 2497, 3190 |
| BtsIMutI | CAGTG | 8 cut(s) | 27, 684, 1552, 1667, 1781, 2415, 2466, 3757 |
| BveI | ACCTGC | 4 cut(s) | 299, 679, 1571, 1853 |
| CciI | TCATGA | 2 cut(s) | 418, 3858 |
| CfoI | GCGC | 3 cut(s) | 2887, 2889, 3468 |
| Cfr10I | RCCGGY | 1 cut(s) | 1869 |
| Cfr9I | CCCGGG | 1 cut(s) | 2651 |
| CseI | GACGC | 3 cut(s) | 515, 917, 1329 |
| DraIII | CACNNNGTG | 2 cut(s) | 1977, 2799 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 536 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3130 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 536 |
| EaeI | YGGCCR | 1 cut(s) | 2425 |
| EagI | CGGCCG | 1 cut(s) | 2425 |
| Eam1104I | CTCTTC | 5 cut(s) | 68, 74, 351, 1083, 3486 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3130 |
| EarI | CTCTTC | 5 cut(s) | 68, 74, 351, 1083, 3486 |
| Ecl136II | GAGCTC | 1 cut(s) | 371 |
| EclXI | CGGCCG | 1 cut(s) | 2425 |
| Eco130I | CCWWGG | 8 cut(s) | 466, 955, 1315, 2977, 3142, 3178, 3194, 3291 |
| Eco24I | GRGCYC | 2 cut(s) | 373, 819 |
| Eco31I | GGTCTC | 1 cut(s) | 1547 |
| Eco47I | GGWCC | 8 cut(s) | 884, 1657, 2341, 2845, 2926, 3288, 3514, 3769 |
| Eco52I | CGGCCG | 1 cut(s) | 2425 |
| Eco53kI | GAGCTC | 1 cut(s) | 371 |
| Eco57I | CTGAAG | 3 cut(s) | 704, 784, 897 |
| Eco88I | CYCGRG | 2 cut(s) | 2651, 3570 |
| EcoICRI | GAGCTC | 1 cut(s) | 371 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 500, 876 |
| EcoO109I | RGGNCCY | 3 cut(s) | 470, 3514, 3769 |
| EcoRI | GAATTC | 2 cut(s) | 1426, 2042 |
| EcoRII | CCWGG | 5 cut(s) | 304, 819, 2263, 2323, 3052 |
| EcoT14I | CCWWGG | 8 cut(s) | 466, 955, 1315, 2977, 3142, 3178, 3194, 3291 |
| EcoT22I | ATGCAT | 2 cut(s) | 1044, 1156 |
| EcoT38I | GRGCYC | 2 cut(s) | 373, 819 |
| ErhI | CCWWGG | 8 cut(s) | 466, 955, 1315, 2977, 3142, 3178, 3194, 3291 |
| Esp3I | CGTCTC | 1 cut(s) | 1072 |
| FaqI | GGGAC | 5 cut(s) | 409, 1855, 2634, 3624, 3760 |
| FauI | CCCGC | 2 cut(s) | 2634, 3785 |
| FauNDI | CATATG | 3 cut(s) | 280, 1916, 3852 |
| FbaI | TGATCA | 2 cut(s) | 2286, 3855 |
| FblI | GTMKAC | 1 cut(s) | 807 |
| Fnu4HI | GCNGC | 7 cut(s) | 139, 302, 614, 1983, 2639, 3213, 3564 |
| FokI | GGATG | 9 cut(s) | 90, 138, 1141, 1181, 1478, 1742, 1915, 2504, 3177 |
| FriOI | GRGCYC | 2 cut(s) | 373, 819 |
| Fsp4HI | GCNGC | 7 cut(s) | 139, 302, 614, 1983, 2639, 3213, 3564 |
| FspBI | CTAG | 7 cut(s) | 167, 1482, 1491, 2519, 2666, 3248, 3386 |
| GlaI | GCGC | 3 cut(s) | 2886, 2888, 3467 |
| GluI | GCNGC | 7 cut(s) | 139, 302, 614, 1983, 2639, 3213, 3564 |
| GsuI | CTGGAG | 4 cut(s) | 954, 2286, 2493, 3176 |
| HapII | CCGG | 5 cut(s) | 861, 1870, 2652, 3331, 3642 |
| HgaI | GACGC | 3 cut(s) | 515, 917, 1329 |
| HhaI | GCGC | 3 cut(s) | 2887, 2889, 3468 |
| Hin6I | GCGC | 3 cut(s) | 2885, 2887, 3466 |
| HinP1I | GCGC | 3 cut(s) | 2885, 2887, 3466 |
| HincII | GTYRAC | 2 cut(s) | 451, 796 |
| HindII | GTYRAC | 2 cut(s) | 451, 796 |
| HpaI | GTTAAC | 1 cut(s) | 451 |
| HpaII | CCGG | 5 cut(s) | 861, 1870, 2652, 3331, 3642 |
| HphI | GGTGA | 6 cut(s) | 758, 1243, 1379, 1820, 2972, 3487 |
| Hpy166II | GTNNAC | 8 cut(s) | 451, 463, 730, 796, 808, 884, 2614, 3667 |
| Hpy8I | GTNNAC | 8 cut(s) | 451, 463, 730, 796, 808, 884, 2614, 3667 |
| Hpy99I | CGWCG | 3 cut(s) | 815, 921, 2491 |
| HpyCH4III | ACNGT | 7 cut(s) | 22, 1059, 1403, 2461, 3381, 3393, 3883 |
| HpyCH4IV | ACGT | 9 cut(s) | 447, 514, 919, 1081, 1607, 1832, 2109, 2187, 2369 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 438, 1274, 1491, 2545, 3218, 3268, 3277, 3463, 3503 |
| HpySE526I | ACGT | 9 cut(s) | 447, 514, 919, 1081, 1607, 1832, 2109, 2187, 2369 |
| HspAI | GCGC | 3 cut(s) | 2885, 2887, 3466 |
| Kpn2I | TCCGGA | 1 cut(s) | 3330 |
| KpnI | GGTACC | 2 cut(s) | 54, 827 |
| KroI | GCCGGC | 1 cut(s) | 1869 |
| KroNI | GCCGGC | 1 cut(s) | 1871 |
| Ksp22I | TGATCA | 2 cut(s) | 2286, 3855 |
| KspAI | GTTAAC | 1 cut(s) | 451 |
| LguI | GCTCTTC | 1 cut(s) | 1083 |
| Lsp1109I | GCAGC | 5 cut(s) | 125, 600, 2625, 3224, 3575 |
| MaeI | CTAG | 7 cut(s) | 167, 1482, 1491, 2519, 2666, 3248, 3386 |
| MaeII | ACGT | 9 cut(s) | 447, 514, 919, 1081, 1607, 1832, 2109, 2187, 2369 |
| MaeIII | GTNAC | 3 cut(s) | 670, 2461, 3356 |
| MfeI | CAATTG | 3 cut(s) | 55, 1278, 2840 |
| MflI | RGATCY | 5 cut(s) | 1144, 1303, 2195, 2973, 3253 |
| MhlI | GDGCHC | 7 cut(s) | 373, 579, 819, 1832, 2616, 2679, 2911 |
| MlyI | GAGTC | 4 cut(s) | 431, 2594, 2656, 3581 |
| MmeI | TCCRAC | 1 cut(s) | 499 |
| Mph1103I | ATGCAT | 2 cut(s) | 1044, 1156 |
| MroI | TCCGGA | 1 cut(s) | 3330 |
| MroNI | GCCGGC | 1 cut(s) | 1869 |
| MroXI | GAANNNNTTC | 3 cut(s) | 397, 1374, 2774 |
| MseI | TTAA | 9 cut(s) | 450, 498, 1130, 1218, 1574, 1674, 2120, 2388, 2834 |
| MslI | CAYNNNNRTG | 5 cut(s) | 216, 254, 1026, 1332, 3020 |
| MspA1I | CMGCKG | 2 cut(s) | 851, 3780 |
| MspCI | CTTAAG | 1 cut(s) | 1573 |
| MspI | CCGG | 5 cut(s) | 861, 1870, 2652, 3331, 3642 |
| MspR9I | CCNGG | 9 cut(s) | 306, 821, 862, 2265, 2325, 2652, 2653, 3054, 3642 |
| MunI | CAATTG | 3 cut(s) | 55, 1278, 2840 |
| Mva1269I | GAATGC | 2 cut(s) | 1208, 3758 |
| MvaI | CCWGG | 5 cut(s) | 306, 821, 2265, 2325, 3054 |
| MvnI | CGCG | 2 cut(s) | 2887, 3468 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 438, 1274, 1491, 2545, 3218, 3268, 3277, 3463, 3503 |
| NaeI | GCCGGC | 1 cut(s) | 1871 |
| NciI | CCSGG | 4 cut(s) | 862, 2652, 2653, 3642 |
| NcoI | CCATGG | 1 cut(s) | 3142 |
| NdeI | CATATG | 3 cut(s) | 280, 1916, 3852 |
| NgoMIV | GCCGGC | 1 cut(s) | 1869 |
| NheI | GCTAGC | 1 cut(s) | 1490 |
| NmuCI | GTSAC | 3 cut(s) | 670, 2461, 3356 |
| NsiI | ATGCAT | 2 cut(s) | 1044, 1156 |
| NspI | RCATGY | 5 cut(s) | 791, 1076, 2507, 2543, 2992 |
| NspV | TTCGAA | 2 cut(s) | 2951, 3605 |
| PaeI | GCATGC | 1 cut(s) | 2543 |
| PagI | TCATGA | 2 cut(s) | 418, 3858 |
| PaqCI | CACCTGC | 2 cut(s) | 299, 1571 |
| PauI | GCGCGC | 1 cut(s) | 2885 |
| PciI | ACATGT | 1 cut(s) | 2988 |
| PciSI | GCTCTTC | 1 cut(s) | 1083 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 925, 946, 1932, 3634 |
| PctI | GAATGC | 2 cut(s) | 1208, 3758 |
| PdiI | GCCGGC | 1 cut(s) | 1871 |
| PdmI | GAANNNNTTC | 3 cut(s) | 397, 1374, 2774 |
| PfeI | GAWTC | 6 cut(s) | 393, 522, 560, 1193, 2948, 3012 |
| PflFI | GACNNNGTC | 1 cut(s) | 1323 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 739, 2896, 3676 |
| PfoI | TCCNGGA | 1 cut(s) | 2263 |
| PkrI | GCNGC | 7 cut(s) | 140, 303, 615, 1984, 2640, 3214, 3565 |
| PleI | GAGTC | 4 cut(s) | 430, 2594, 2655, 3581 |
| PpsI | GAGTC | 4 cut(s) | 430, 2594, 2655, 3581 |
| Ppu21I | YACGTR | 1 cut(s) | 2370 |
| PpuMI | RGGWCCY | 2 cut(s) | 3514, 3769 |
| PscI | ACATGT | 1 cut(s) | 2988 |
| PsiI | TTATAA | 2 cut(s) | 1122, 1503 |
| Psp124BI | GAGCTC | 1 cut(s) | 373 |
| Psp1406I | AACGTT | 2 cut(s) | 2109, 2187 |
| Psp5II | RGGWCCY | 2 cut(s) | 3514, 3769 |
| Psp6I | CCWGG | 5 cut(s) | 304, 819, 2263, 2323, 3052 |
| PspGI | CCWGG | 5 cut(s) | 304, 819, 2263, 2323, 3052 |
| PspPPI | RGGWCCY | 2 cut(s) | 3514, 3769 |
| PstI | CTGCAG | 3 cut(s) | 601, 3063, 3214 |
| PsuI | RGATCY | 5 cut(s) | 1144, 1303, 2195, 2973, 3253 |
| PsyI | GACNNNGTC | 1 cut(s) | 1323 |
| PteI | GCGCGC | 1 cut(s) | 2885 |
| PvuII | CAGCTG | 1 cut(s) | 851 |
| RseI | CAYNNNNRTG | 5 cut(s) | 216, 254, 1026, 1332, 3020 |
| SacI | GAGCTC | 1 cut(s) | 373 |
| SapI | GCTCTTC | 1 cut(s) | 1083 |
| SaqAI | TTAA | 9 cut(s) | 450, 498, 1130, 1218, 1574, 1674, 2120, 2388, 2834 |
| SatI | GCNGC | 7 cut(s) | 139, 302, 614, 1983, 2639, 3213, 3564 |
| ScaI | AGTACT | 2 cut(s) | 2664, 2692 |
| SchI | GAGTC | 4 cut(s) | 431, 2594, 2656, 3581 |
| ScrFI | CCNGG | 9 cut(s) | 306, 821, 862, 2265, 2325, 2652, 2653, 3054, 3642 |
| SduI | GDGCHC | 7 cut(s) | 373, 579, 819, 1832, 2616, 2679, 2911 |
| SfcI | CTRYAG | 4 cut(s) | 597, 2437, 3059, 3210 |
| SfuI | TTCGAA | 2 cut(s) | 2951, 3605 |
| SinI | GGWCC | 8 cut(s) | 884, 1657, 2341, 2845, 2926, 3288, 3514, 3769 |
| SmaI | CCCGGG | 1 cut(s) | 2653 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 216, 254, 1026, 1332, 3020 |
| SmlI | CTYRAG | 6 cut(s) | 1573, 2312, 2631, 2737, 3257, 3508 |
| SmoI | CTYRAG | 6 cut(s) | 1573, 2312, 2631, 2737, 3257, 3508 |
| SphI | GCATGC | 1 cut(s) | 2543 |
| SsiI | CCGC | 6 cut(s) | 141, 301, 1983, 2641, 3468, 3778 |
| SspI | AATATT | 2 cut(s) | 1651, 2745 |
| SspMI | CTAG | 7 cut(s) | 167, 1482, 1491, 2519, 2666, 3248, 3386 |
| SstI | GAGCTC | 1 cut(s) | 373 |
| StyD4I | CCNGG | 9 cut(s) | 304, 819, 860, 2263, 2323, 2650, 2651, 3052, 3640 |
| StyI | CCWWGG | 8 cut(s) | 466, 955, 1315, 2977, 3142, 3178, 3194, 3291 |
| TaaI | ACNGT | 7 cut(s) | 22, 1059, 1403, 2461, 3381, 3393, 3883 |
| TaiI | ACGT | 9 cut(s) | 450, 517, 922, 1084, 1610, 1835, 2112, 2190, 2372 |
| TatI | WGTACW | 5 cut(s) | 712, 1355, 2662, 2690, 3264 |
| TauI | GCSGC | 2 cut(s) | 304, 1985 |
| TfiI | GAWTC | 6 cut(s) | 393, 522, 560, 1193, 2948, 3012 |
| Tru1I | TTAA | 9 cut(s) | 450, 498, 1130, 1218, 1574, 1674, 2120, 2388, 2834 |
| Tru9I | TTAA | 9 cut(s) | 450, 498, 1130, 1218, 1574, 1674, 2120, 2388, 2834 |
| TscAI | CASTG | 8 cut(s) | 27, 684, 1552, 1667, 1788, 2415, 2466, 3757 |
| TseFI | GTSAC | 3 cut(s) | 670, 2461, 3356 |
| TseI | GCWGC | 5 cut(s) | 138, 613, 2638, 3212, 3563 |
| Tsp45I | GTSAC | 3 cut(s) | 670, 2461, 3356 |
| TspGWI | ACGGA | 3 cut(s) | 2504, 2747, 3626 |
| TspMI | CCCGGG | 1 cut(s) | 2651 |
| TspRI | CASTG | 8 cut(s) | 27, 684, 1552, 1667, 1788, 2415, 2466, 3757 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1323 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 739, 2896, 3676 |
| Vha464I | CTTAAG | 1 cut(s) | 1573 |
| VneI | GTGCAC | 1 cut(s) | 2612 |
| VpaK11BI | GGWCC | 8 cut(s) | 884, 1657, 2341, 2845, 2926, 3288, 3514, 3769 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 500, 876 |
| XbaI | TCTAGA | 1 cut(s) | 3385 |
| XceI | RCATGY | 5 cut(s) | 791, 1076, 2507, 2543, 2992 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 473 |
| XmaI | CCCGGG | 1 cut(s) | 2651 |
| XmiI | GTMKAC | 1 cut(s) | 807 |
| XmnI | GAANNNNTTC | 3 cut(s) | 397, 1374, 2774 |
| XspI | CTAG | 7 cut(s) | 167, 1482, 1491, 2519, 2666, 3248, 3386 |
| ZrmI | AGTACT | 2 cut(s) | 2664, 2692 |
| Zsp2I | ATGCAT | 2 cut(s) | 1044, 1156 |