DNA repair and recombination protein RAD54-like protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G42670 AT3G42670 AT3G42670 AT3G42670 AT5G20420 |
| fragaria_vesca | FvH4_7g25190 FvH4_7g25190 FvH4_7g25190 FvH4_7g25190 FvH4_7g25190 |
| prunus_persica | Prupe.2G256800_v2.0.a1 Prupe.2G256800_v2.0.a1 Prupe.2G256800_v2.0.a1 Prupe.2G256800_v2.0.a1 |
| pyrus_communis | pycom07g20580 |
| rosa_chinensis | RchiOBHm_Chr1g0371111 |
| rosa_laevigata | RLG00000026985 |
| rosa_multiflora | Rmu_sc0003714.1_g000006 |
| rosa_roxburghii | Rroxscaffold_4G00285980 |
| rosa_rugosa | Rorug01G0361300 Rorug01G0361300 Rorug01G0361400 Rorug01G0361500 Rorug01G0361500 |
| rosa_samantha | Rh1AG371800 Rh1BG335000 Rh1CG348400 Rh1DG366300 |
| rosa_wichuraiana | Rw1G032690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1223 |
| Acc36I | ACCTGC | 1 cut(s) | 1223 |
| Acc65I | GGTACC | 1 cut(s) | 454 |
| AccB1I | GGYRCC | 1 cut(s) | 454 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2551 |
| AccI | GTMKAC | 3 cut(s) | 1199, 2222, 2713 |
| AciI | CCGC | 1 cut(s) | 559 |
| AcuI | CTGAAG | 4 cut(s) | 162, 1467, 1985, 3219 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 1142, 1813, 1922, 2059, 2352, 2551 |
| AflII | CTTAAG | 1 cut(s) | 1553 |
| AflIII | ACRYGT | 1 cut(s) | 1594 |
| AgeI | ACCGGT | 1 cut(s) | 2059 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1991 |
| AjnI | CCWGG | 8 cut(s) | 1510, 1915, 1975, 2021, 2302, 2967, 3151, 3295 |
| AleI | CACNNNNGTG | 1 cut(s) | 1716 |
| Alw26I | GTCTC | 2 cut(s) | 2642, 3025 |
| Ama87I | CYCGRG | 1 cut(s) | 2559 |
| AoxI | GGCC | 5 cut(s) | 631, 647, 2128, 2462, 3293 |
| ApeKI | GCWGC | 3 cut(s) | 1478, 2867, 3218 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1492, 1524, 2243, 2275 |
| AsiGI | ACCGGT | 1 cut(s) | 2059 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 28, 1322, 1970, 2426 |
| Asp718I | GGTACC | 1 cut(s) | 454 |
| AspS9I | GGNCC | 8 cut(s) | 101, 632, 974, 1221, 1309, 1508, 2129, 2497 |
| AsuC2I | CCSGG | 3 cut(s) | 452, 2709, 3100 |
| AsuHPI | GGTGA | 5 cut(s) | 509, 1013, 1469, 2821, 3494 |
| AsuII | TTCGAA | 1 cut(s) | 640 |
| AvaI | CYCGRG | 1 cut(s) | 2559 |
| AvaII | GGWCC | 6 cut(s) | 101, 974, 1221, 1309, 1508, 2497 |
| AxyI | CCTNAGG | 1 cut(s) | 2291 |
| BaeGI | GKGCMC | 1 cut(s) | 2331 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2171, 2204 |
| BamHI | GGATCC | 2 cut(s) | 447, 3424 |
| BanI | GGYRCC | 1 cut(s) | 454 |
| BanII | GRGCYC | 1 cut(s) | 2310 |
| BauI | CACGAG | 1 cut(s) | 3282 |
| BbsI | GAAGAC | 4 cut(s) | 1089, 2256, 3360, 3492 |
| BbvI | GCAGC | 3 cut(s) | 1465, 2879, 3205 |
| BccI | CCATC | 7 cut(s) | 377, 403, 538, 1103, 1861, 2545, 2899 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1007, 1041 |
| BciT130I | CCWGG | 8 cut(s) | 1512, 1917, 1977, 2023, 2304, 2969, 3153, 3297 |
| BciVI | GTATCC | 2 cut(s) | 2814, 3400 |
| BclI | TGATCA | 7 cut(s) | 157, 898, 934, 1345, 1938, 2826, 3510 |
| BcnI | CCSGG | 3 cut(s) | 452, 2709, 3100 |
| BcoDI | GTCTC | 2 cut(s) | 2642, 3025 |
| BfmI | CTRYAG | 4 cut(s) | 2089, 2714, 2865, 3276 |
| BfrI | CTTAAG | 1 cut(s) | 1553 |
| BfuAI | ACCTGC | 1 cut(s) | 1223 |
| BfuI | GTATCC | 2 cut(s) | 2814, 3400 |
| BisI | GCNGC | 4 cut(s) | 560, 1479, 2868, 3219 |
| BlsI | GCNGC | 4 cut(s) | 561, 1480, 2869, 3220 |
| BmcAI | AGTACT | 4 cut(s) | 209, 754, 1036, 2438 |
| Bme18I | GGWCC | 6 cut(s) | 101, 974, 1221, 1309, 1508, 2497 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1991 |
| BmeT110I | CYCGRG | 1 cut(s) | 2559 |
| BmgT120I | GGNCC | 8 cut(s) | 101, 632, 974, 1221, 1309, 1508, 2129, 2497 |
| BmsI | GCATC | 9 cut(s) | 7, 475, 598, 1127, 1448, 2142, 2232, 3188, 3230 |
| BpiI | GAAGAC | 4 cut(s) | 1089, 2256, 3360, 3492 |
| BpmI | CTGGAG | 3 cut(s) | 1224, 1938, 3128 |
| Bpu14I | TTCGAA | 1 cut(s) | 640 |
| BpuEI | CTTGAG | 2 cut(s) | 2268, 2933 |
| BpuMI | CCSGG | 3 cut(s) | 452, 2709, 3100 |
| BsaI | GGTCTC | 1 cut(s) | 2642 |
| BsaJI | CCNNGG | 8 cut(s) | 97, 946, 1975, 2303, 2808, 2833, 2849, 3099 |
| BsaWI | WCCGGW | 1 cut(s) | 2059 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1379, 1394, 1409, 1424 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 1142, 1813, 1922, 2059, 2352, 2551 |
| Bse118I | RCCGGY | 1 cut(s) | 2059 |
| Bse1I | ACTGG | 4 cut(s) | 70, 798, 1207, 1312 |
| Bse21I | CCTNAGG | 1 cut(s) | 2291 |
| Bse3DI | GCAATG | 2 cut(s) | 1941, 3018 |
| BseBI | CCWGG | 8 cut(s) | 1512, 1917, 1977, 2023, 2304, 2969, 3153, 3297 |
| BseDI | CCNNGG | 8 cut(s) | 97, 946, 1975, 2303, 2808, 2833, 2849, 3099 |
| BseGI | GGATG | 7 cut(s) | 852, 1096, 1114, 1118, 1165, 1738, 2845 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 1142, 1813, 1922, 2059, 2352, 2551 |
| BseMI | GCAATG | 2 cut(s) | 1941, 3018 |
| BseMII | CTCAG | 7 cut(s) | 534, 609, 747, 1389, 2282, 2639, 3435 |
| BseNI | ACTGG | 4 cut(s) | 70, 798, 1207, 1312 |
| BseRI | GAGGAG | 5 cut(s) | 1394, 1397, 1400, 1415, 1709 |
| BseSI | GKGCMC | 1 cut(s) | 2331 |
| BseXI | GCAGC | 3 cut(s) | 1465, 2879, 3205 |
| BseYI | CCCAGC | 1 cut(s) | 1922 |
| BsgI | GTGCAG | 1 cut(s) | 365 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2080 |
| BshFI | GGCC | 5 cut(s) | 633, 649, 2130, 2464, 3295 |
| BshNI | GGYRCC | 1 cut(s) | 454 |
| BshTI | ACCGGT | 1 cut(s) | 2059 |
| BsiEI | CGRYCG | 1 cut(s) | 2080 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2559 |
| BsiSI | CCGG | 4 cut(s) | 452, 2060, 2709, 3099 |
| BslFI | GGGAC | 1 cut(s) | 2877 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 1142, 1813, 1922, 2059, 2352, 2551 |
| BsmAI | GTCTC | 2 cut(s) | 2642, 3025 |
| BsmFI | GGGAC | 1 cut(s) | 2877 |
| BsmI | GAATGC | 2 cut(s) | 827, 3500 |
| BsnI | GGCC | 5 cut(s) | 633, 649, 2130, 2464, 3295 |
| Bso31I | GGTCTC | 1 cut(s) | 2642 |
| BsoBI | CYCGRG | 1 cut(s) | 2559 |
| Bsp119I | TTCGAA | 1 cut(s) | 640 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2310, 2331 |
| BspACI | CCGC | 1 cut(s) | 559 |
| BspANI | GGCC | 5 cut(s) | 633, 649, 2130, 2464, 3295 |
| BspCNI | CTCAG | 7 cut(s) | 535, 610, 748, 1390, 2283, 2640, 3436 |
| BspHI | TCATGA | 2 cut(s) | 49, 3513 |
| BspMAI | CTGCAG | 1 cut(s) | 2869 |
| BspMI | ACCTGC | 1 cut(s) | 1223 |
| BspT104I | TTCGAA | 1 cut(s) | 640 |
| BspT107I | GGYRCC | 1 cut(s) | 454 |
| BspTI | CTTAAG | 1 cut(s) | 1553 |
| BspTNI | GGTCTC | 1 cut(s) | 2642 |
| BsrDI | GCAATG | 2 cut(s) | 1941, 3018 |
| BsrFI | RCCGGY | 1 cut(s) | 2059 |
| BsrI | ACTGG | 4 cut(s) | 70, 798, 1207, 1312 |
| BssAI | RCCGGY | 1 cut(s) | 2059 |
| BssECI | CCNNGG | 8 cut(s) | 97, 946, 1975, 2303, 2808, 2833, 2849, 3099 |
| BssNAI | GTATAC | 2 cut(s) | 1200, 2223 |
| BssSI | CACGAG | 1 cut(s) | 3282 |
| BssT1I | CCWWGG | 5 cut(s) | 97, 946, 2808, 2833, 2849 |
| Bst1107I | GTATAC | 2 cut(s) | 1200, 2223 |
| Bst2BI | CACGAG | 1 cut(s) | 3282 |
| Bst2UI | CCWGG | 8 cut(s) | 1512, 1917, 1977, 2023, 2304, 2969, 3153, 3297 |
| Bst4CI | ACNGT | 8 cut(s) | 215, 705, 998, 1797, 2078, 2978, 3036, 3048 |
| Bst6I | CTCTTC | 2 cut(s) | 738, 1135 |
| BstAFI | CTTAAG | 1 cut(s) | 1553 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 608, 2873 |
| BstBI | TTCGAA | 1 cut(s) | 640 |
| BstDEI | CTNAG | 9 cut(s) | 543, 618, 756, 780, 1398, 1784, 2291, 2648, 3444 |
| BstF5I | GGATG | 7 cut(s) | 852, 1096, 1114, 1118, 1165, 1738, 2845 |
| BstMAI | GTCTC | 2 cut(s) | 2642, 3025 |
| BstMCI | CGRYCG | 1 cut(s) | 2080 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 568, 608, 831, 2873, 3301 |
| BstNI | CCWGG | 8 cut(s) | 1512, 1917, 1977, 2023, 2304, 2969, 3153, 3297 |
| BstNSI | RCATGY | 5 cut(s) | 517, 606, 1598, 2159, 2195 |
| BstSFI | CTRYAG | 4 cut(s) | 2089, 2714, 2865, 3276 |
| BstSLI | GKGCMC | 1 cut(s) | 2331 |
| BstV1I | GCAGC | 3 cut(s) | 1465, 2879, 3205 |
| BstV2I | GAAGAC | 4 cut(s) | 1089, 2256, 3360, 3492 |
| BstX2I | RGATCY | 7 cut(s) | 447, 1660, 1672, 1847, 2049, 3103, 3424 |
| BstYI | RGATCY | 7 cut(s) | 447, 1660, 1672, 1847, 2049, 3103, 3424 |
| BstZ17I | GTATAC | 2 cut(s) | 1200, 2223 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2291 |
| BsuI | GTATCC | 2 cut(s) | 2814, 3400 |
| BsuRI | GGCC | 5 cut(s) | 633, 649, 2130, 2464, 3295 |
| BtsCI | GGATG | 7 cut(s) | 852, 1096, 1114, 1118, 1165, 1738, 2845 |
| BtsI | GCAGTG | 1 cut(s) | 3186 |
| BtsIMutI | CAGTG | 9 cut(s) | 348, 701, 805, 1003, 1319, 2742, 3071, 3186, 3412 |
| BveI | ACCTGC | 1 cut(s) | 1223 |
| CciI | TCATGA | 2 cut(s) | 49, 3513 |
| Cfr10I | RCCGGY | 1 cut(s) | 2059 |
| Cfr13I | GGNCC | 8 cut(s) | 101, 632, 974, 1221, 1309, 1508, 2129, 2497 |
| CseI | GACGC | 2 cut(s) | 560, 909 |
| CsiI | ACCWGGT | 3 cut(s) | 2021, 2967, 3151 |
| CspAI | ACCGGT | 1 cut(s) | 2059 |
| DdeI | CTNAG | 9 cut(s) | 543, 618, 756, 780, 1398, 1784, 2291, 2648, 3444 |
| DraI | TTTAAA | 1 cut(s) | 418 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1991 |
| Eam1104I | CTCTTC | 2 cut(s) | 738, 1135 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1991 |
| EarI | CTCTTC | 2 cut(s) | 738, 1135 |
| Eco130I | CCWWGG | 5 cut(s) | 97, 946, 2808, 2833, 2849 |
| Eco147I | AGGCCT | 1 cut(s) | 3295 |
| Eco24I | GRGCYC | 1 cut(s) | 2310 |
| Eco31I | GGTCTC | 1 cut(s) | 2642 |
| Eco47I | GGWCC | 6 cut(s) | 101, 974, 1221, 1309, 1508, 2497 |
| Eco57I | CTGAAG | 4 cut(s) | 162, 1467, 1985, 3219 |
| Eco81I | CCTNAGG | 1 cut(s) | 2291 |
| Eco88I | CYCGRG | 1 cut(s) | 2559 |
| EcoO109I | RGGNCCY | 3 cut(s) | 101, 632, 1221 |
| EcoRI | GAATTC | 2 cut(s) | 190, 2033 |
| EcoRII | CCWGG | 8 cut(s) | 1510, 1915, 1975, 2021, 2302, 2967, 3151, 3295 |
| EcoT14I | CCWWGG | 5 cut(s) | 97, 946, 2808, 2833, 2849 |
| EcoT22I | ATGCAT | 2 cut(s) | 519, 2157 |
| EcoT38I | GRGCYC | 1 cut(s) | 2310 |
| ErhI | CCWWGG | 5 cut(s) | 97, 946, 2808, 2833, 2849 |
| FaqI | GGGAC | 1 cut(s) | 2877 |
| FauNDI | CATATG | 1 cut(s) | 3507 |
| FbaI | TGATCA | 7 cut(s) | 157, 898, 934, 1345, 1938, 2826, 3510 |
| FblI | GTMKAC | 3 cut(s) | 1199, 2222, 2713 |
| Fnu4HI | GCNGC | 4 cut(s) | 560, 1479, 2868, 3219 |
| FokI | GGATG | 7 cut(s) | 859, 1103, 1105, 1121, 1152, 1745, 2832 |
| FriOI | GRGCYC | 1 cut(s) | 2310 |
| Fsp4HI | GCNGC | 4 cut(s) | 560, 1479, 2868, 3219 |
| GluI | GCNGC | 4 cut(s) | 560, 1479, 2868, 3219 |
| GsaI | CCCAGC | 1 cut(s) | 1926 |
| GsuI | CTGGAG | 3 cut(s) | 1224, 1938, 3128 |
| HaeIII | GGCC | 5 cut(s) | 633, 649, 2130, 2464, 3295 |
| HapII | CCGG | 4 cut(s) | 452, 2060, 2709, 3099 |
| HgaI | GACGC | 2 cut(s) | 560, 909 |
| HincII | GTYRAC | 2 cut(s) | 82, 94 |
| HindII | GTYRAC | 2 cut(s) | 82, 94 |
| HinfI | GANTC | 7 cut(s) | 53, 677, 1466, 2252, 2603, 3242, 3253 |
| HpaI | GTTAAC | 1 cut(s) | 94 |
| HpaII | CCGG | 4 cut(s) | 452, 2060, 2709, 3099 |
| HphI | GGTGA | 5 cut(s) | 509, 1013, 1469, 2821, 3494 |
| Hpy166II | GTNNAC | 9 cut(s) | 82, 94, 232, 1200, 1632, 2223, 2266, 2714, 2974 |
| Hpy8I | GTNNAC | 9 cut(s) | 82, 94, 232, 1200, 1632, 2223, 2266, 2714, 2974 |
| Hpy99I | CGWCG | 1 cut(s) | 576 |
| HpyCH4III | ACNGT | 8 cut(s) | 215, 705, 998, 1797, 2078, 2978, 3036, 3048 |
| HpyCH4IV | ACGT | 2 cut(s) | 1717, 3121 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 568, 608, 831, 2873, 3301 |
| HpyF3I | CTNAG | 9 cut(s) | 543, 618, 756, 780, 1398, 1784, 2291, 2648, 3444 |
| HpySE526I | ACGT | 2 cut(s) | 1717, 3121 |
| KpnI | GGTACC | 1 cut(s) | 458 |
| Ksp22I | TGATCA | 7 cut(s) | 157, 898, 934, 1345, 1938, 2826, 3510 |
| KspAI | GTTAAC | 1 cut(s) | 94 |
| Lsp1109I | GCAGC | 3 cut(s) | 1465, 2879, 3205 |
| LweI | GCATC | 9 cut(s) | 7, 475, 598, 1127, 1448, 2142, 2232, 3188, 3230 |
| MabI | ACCWGGT | 3 cut(s) | 2021, 2967, 3151 |
| MaeII | ACGT | 2 cut(s) | 1717, 3121 |
| MaeIII | GTNAC | 6 cut(s) | 301, 509, 800, 1597, 2113, 2980 |
| MflI | RGATCY | 7 cut(s) | 447, 1660, 1672, 1847, 2049, 3103, 3424 |
| MhlI | GDGCHC | 2 cut(s) | 2310, 2331 |
| MlyI | GAGTC | 3 cut(s) | 47, 2246, 3236 |
| MmeI | TCCRAC | 1 cut(s) | 3219 |
| Mph1103I | ATGCAT | 2 cut(s) | 519, 2157 |
| MroXI | GAANNNNTTC | 4 cut(s) | 28, 1322, 1970, 2426 |
| MseI | TTAA | 8 cut(s) | 93, 129, 417, 840, 1226, 1554, 1772, 2040 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1716 |
| MspA1I | CMGCKG | 1 cut(s) | 3218 |
| MspCI | CTTAAG | 1 cut(s) | 1553 |
| MspI | CCGG | 4 cut(s) | 452, 2060, 2709, 3099 |
| Mva1269I | GAATGC | 2 cut(s) | 827, 3500 |
| MvaI | CCWGG | 8 cut(s) | 1512, 1917, 1977, 2023, 2304, 2969, 3153, 3297 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 568, 608, 831, 2873, 3301 |
| NciI | CCSGG | 3 cut(s) | 452, 2709, 3100 |
| NdeI | CATATG | 1 cut(s) | 3507 |
| NmuCI | GTSAC | 2 cut(s) | 509, 800 |
| NsiI | ATGCAT | 2 cut(s) | 519, 2157 |
| NspI | RCATGY | 5 cut(s) | 517, 606, 1598, 2159, 2195 |
| NspV | TTCGAA | 1 cut(s) | 640 |
| OliI | CACNNNNGTG | 1 cut(s) | 1716 |
| PaeI | GCATGC | 1 cut(s) | 2195 |
| PaeR7I | CTCGAG | 1 cut(s) | 2559 |
| PagI | TCATGA | 2 cut(s) | 49, 3513 |
| PaqCI | CACCTGC | 1 cut(s) | 1223 |
| PceI | AGGCCT | 1 cut(s) | 3295 |
| PciI | ACATGT | 1 cut(s) | 1594 |
| PctI | GAATGC | 2 cut(s) | 827, 3500 |
| PdmI | GAANNNNTTC | 4 cut(s) | 28, 1322, 1970, 2426 |
| PfeI | GAWTC | 4 cut(s) | 677, 1466, 2603, 3253 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2551 |
| PfoI | TCCNGGA | 1 cut(s) | 1915 |
| PinAI | ACCGGT | 1 cut(s) | 2059 |
| PkrI | GCNGC | 4 cut(s) | 561, 1480, 2869, 3220 |
| PleI | GAGTC | 3 cut(s) | 47, 2246, 3236 |
| PpsI | GAGTC | 3 cut(s) | 47, 2246, 3236 |
| PpuMI | RGGWCCY | 2 cut(s) | 101, 1221 |
| PscI | ACATGT | 1 cut(s) | 1594 |
| Psp5II | RGGWCCY | 2 cut(s) | 101, 1221 |
| Psp6I | CCWGG | 8 cut(s) | 1510, 1915, 1975, 2021, 2302, 2967, 3151, 3295 |
| PspFI | CCCAGC | 1 cut(s) | 1922 |
| PspGI | CCWGG | 8 cut(s) | 1510, 1915, 1975, 2021, 2302, 2967, 3151, 3295 |
| PspPI | GGNCC | 8 cut(s) | 101, 632, 974, 1221, 1309, 1508, 2129, 2497 |
| PspPPI | RGGWCCY | 2 cut(s) | 101, 1221 |
| PspXI | VCTCGAGB | 1 cut(s) | 2559 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2957, 2989 |
| PstI | CTGCAG | 1 cut(s) | 2869 |
| PsuI | RGATCY | 7 cut(s) | 447, 1660, 1672, 1847, 2049, 3103, 3424 |
| PvuII | CAGCTG | 1 cut(s) | 3218 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1716 |
| SaqAI | TTAA | 8 cut(s) | 93, 129, 417, 840, 1226, 1554, 1772, 2040 |
| SatI | GCNGC | 4 cut(s) | 560, 1479, 2868, 3219 |
| Sau96I | GGNCC | 8 cut(s) | 101, 632, 974, 1221, 1309, 1508, 2129, 2497 |
| ScaI | AGTACT | 4 cut(s) | 209, 754, 1036, 2438 |
| SchI | GAGTC | 3 cut(s) | 47, 2246, 3236 |
| SduI | GDGCHC | 2 cut(s) | 2310, 2331 |
| SexAI | ACCWGGT | 3 cut(s) | 2021, 2967, 3151 |
| SfaNI | GCATC | 9 cut(s) | 7, 475, 598, 1127, 1448, 2142, 2232, 3188, 3230 |
| SfcI | CTRYAG | 4 cut(s) | 2089, 2714, 2865, 3276 |
| Sfr274I | CTCGAG | 1 cut(s) | 2559 |
| SfuI | TTCGAA | 1 cut(s) | 640 |
| SinI | GGWCC | 6 cut(s) | 101, 974, 1221, 1309, 1508, 2497 |
| SlaI | CTCGAG | 1 cut(s) | 2559 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1716 |
| SmlI | CTYRAG | 4 cut(s) | 1553, 2283, 2559, 2912 |
| SmoI | CTYRAG | 4 cut(s) | 1553, 2283, 2559, 2912 |
| SphI | GCATGC | 1 cut(s) | 2195 |
| SseBI | AGGCCT | 1 cut(s) | 3295 |
| SsiI | CCGC | 1 cut(s) | 559 |
| SspI | AATATT | 2 cut(s) | 1840, 2397 |
| StuI | AGGCCT | 1 cut(s) | 3295 |
| StyI | CCWWGG | 5 cut(s) | 97, 946, 2808, 2833, 2849 |
| TaaI | ACNGT | 8 cut(s) | 215, 705, 998, 1797, 2078, 2978, 3036, 3048 |
| TaiI | ACGT | 2 cut(s) | 1720, 3124 |
| TaqI | TCGA | 8 cut(s) | 36, 574, 640, 892, 2163, 2560, 2631, 3348 |
| TatI | WGTACW | 5 cut(s) | 207, 752, 1034, 2436, 2793 |
| TauI | GCSGC | 1 cut(s) | 562 |
| TfiI | GAWTC | 4 cut(s) | 677, 1466, 2603, 3253 |
| Tru1I | TTAA | 8 cut(s) | 93, 129, 417, 840, 1226, 1554, 1772, 2040 |
| Tru9I | TTAA | 8 cut(s) | 93, 129, 417, 840, 1226, 1554, 1772, 2040 |
| TscAI | CASTG | 9 cut(s) | 348, 708, 805, 1003, 1319, 2749, 3071, 3193, 3412 |
| TseFI | GTSAC | 2 cut(s) | 509, 800 |
| TseI | GCWGC | 3 cut(s) | 1478, 2867, 3218 |
| Tsp45I | GTSAC | 2 cut(s) | 509, 800 |
| TspGWI | ACGGA | 1 cut(s) | 1205 |
| TspRI | CASTG | 9 cut(s) | 348, 708, 805, 1003, 1319, 2749, 3071, 3193, 3412 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2551 |
| Vha464I | CTTAAG | 1 cut(s) | 1553 |
| VpaK11BI | GGWCC | 6 cut(s) | 101, 974, 1221, 1309, 1508, 2497 |
| XbaI | TCTAGA | 2 cut(s) | 2317, 3040 |
| XceI | RCATGY | 5 cut(s) | 517, 606, 1598, 2159, 2195 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 104 |
| XhoI | CTCGAG | 1 cut(s) | 2559 |
| XmiI | GTMKAC | 3 cut(s) | 1199, 2222, 2713 |
| XmnI | GAANNNNTTC | 4 cut(s) | 28, 1322, 1970, 2426 |
| ZrmI | AGTACT | 4 cut(s) | 209, 754, 1036, 2438 |
| Zsp2I | ATGCAT | 2 cut(s) | 519, 2157 |