Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005309

Physical Location & Seq

Genomic Coordinates Forward (+)

47685743 .. 47686557

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0361400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAAGAGAAGCATCACAGAGCTCGATCACAGCGTAACCATGGCGAATTGCTTGATGCTGCTCTCTCGAGGCAACGACTACGACTCGTTGATCTCCACCTCATCATCTTCCTCCCCTAGCCGCGTCTTCGAGTGCAAGACTTGTAATCGTCAGTTCCCTTCGTTCCAGGCGCTTGGAGGACACAGAGCGAGTCACAAGAAGCCGAGGCTAGCCGGAGGAGACGGGTCGAGTTCCGACAGCCAGTCGTCTTCGCCGAGCAAACCCAAGACTCACGAGTGCAACATATGCGGGTTGGAGTTTGCTATAGGTCAGGCCTTGGGGGGTCACATGAGGAGGCACAGAGCAGCCGTGACTGATAATAACAATCATCACCAGAATAATAACGGAGTACAATCGAATTCTATGATGGGTTTGAATTCTAATCTGGGCCAAGTAGTTGTCCCGGTTTTGAAGAAGACGAATAGCAGCAGGAGAGTTTTGTGTTTGGATCTCAACTTGACGCCCTTTGAGAATGACATGGAGATTCTTGGAATAGGGAAAACAACTCCTCCTCTTGTTGAGTTTATTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0033170 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Helicase_C Methyltransf_11 Methyltransf_21 SNF2_N

Protein Analysis

190

Amino Acids

20.66

Weight (kDa)

9.02

Isoelectric Point (pI)

64.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	42 - 68	4.4e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	91 - 115	3.2e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42670 AT3G42670 AT3G42670 AT3G42670 AT5G20420
fragaria_vesca	FvH4_7g25190 FvH4_7g25190 FvH4_7g25190 FvH4_7g25190 FvH4_7g25190
prunus_persica	Prupe.2G256800_v2.0.a1 Prupe.2G256800_v2.0.a1 Prupe.2G256800_v2.0.a1 Prupe.2G256800_v2.0.a1
pyrus_communis	pycom07g20580
rosa_chinensis	RchiOBHm_Chr1g0371111
rosa_laevigata	RLG00000026985
rosa_multiflora	Rmu_sc0003714.1_g000006
rosa_roxburghii	Rroxscaffold_4G00285980
rosa_rugosa	Rorug01G0361300 Rorug01G0361300 Rorug01G0361400 Rorug01G0361500 Rorug01G0361500
rosa_samantha	Rh1AG371800 Rh1BG335000 Rh1CG348400 Rh1DG366300
rosa_wichuraiana	Rw1G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	123
AciI	CCGC	2 cut(s)	121, 288
AclWI	GGATC	1 cut(s)	495
AcsI	RAATTY	2 cut(s)	397, 415
AcyI	GRCGYC	1 cut(s)	500
AfaI	GTAC	1 cut(s)	390
AgsI	TTSAA	2 cut(s)	415, 451
AhdI	GACNNNNNGTC	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	495
Ama87I	CYCGRG	1 cut(s)	66
AoxI	GGCC	2 cut(s)	312, 427
ApeKI	GCWGC	3 cut(s)	58, 344, 465
ApoI	RAATTY	2 cut(s)	397, 415
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	427
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	1 cut(s)	362
AsuNHI	GCTAGC	1 cut(s)	208
AvaI	CYCGRG	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	24
BauI	CACGAG	1 cut(s)	272
BbsI	GAAGAC	3 cut(s)	118, 240, 461
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	3 cut(s)	45, 356, 477
BccI	CCATC	1 cut(s)	400
BceAI	ACGGC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	167
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	3 cut(s)	117, 209, 571
BfmI	CTRYAG	1 cut(s)	303
BfoI	RGCGCY	1 cut(s)	173
BisI	GCNGC	4 cut(s)	59, 121, 345, 466
BlsI	GCNGC	4 cut(s)	60, 122, 346, 467
Bme1390I	CCNGG	2 cut(s)	167, 443
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmeT110I	CYCGRG	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	427
BmrFI	CCNGG	2 cut(s)	167, 443
BmsI	GCATC	2 cut(s)	21, 45
BmtI	GCTAGC	1 cut(s)	212
BpiI	GAAGAC	3 cut(s)	118, 240, 461
BpuMI	CCSGG	1 cut(s)	443
BsaHI	GRCGYC	1 cut(s)	500
BsaJI	CCNNGG	3 cut(s)	39, 203, 315
BsaXI	ACNNNNNCTCC	2 cut(s)	532, 562
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	3 cut(s)	39, 203, 315
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	4 cut(s)	231, 346, 537, 540
BseXI	GCAGC	3 cut(s)	45, 356, 477
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	314, 429
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	213, 443
BslFI	GGGAC	1 cut(s)	425
BsmAI	GTCTC	1 cut(s)	213
BsmBI	CGTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	2 cut(s)	314, 429
BsoBI	CYCGRG	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	25, 90, 487
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	2 cut(s)	121, 288
BspANI	GGCC	2 cut(s)	314, 429
BspFNI	CGCG	1 cut(s)	123
BspOI	GCTAGC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	495
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	3 cut(s)	39, 203, 315
BssMI	GATC	3 cut(s)	25, 90, 487
BssNI	GRCGYC	1 cut(s)	500
BssSI	CACGAG	1 cut(s)	272
BssT1I	CCWWGG	2 cut(s)	39, 315
Bst2BI	CACGAG	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	167
BstACI	GRCGYC	1 cut(s)	500
BstAPI	GCANNNNNTGC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	3 cut(s)	28, 93, 490
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	3 cut(s)	25, 90, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	165, 441
BstSFI	CTRYAG	1 cut(s)	303
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	3 cut(s)	45, 356, 477
BstV2I	GAAGAC	3 cut(s)	118, 240, 461
BstX2I	RGATCY	1 cut(s)	487
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	487
BsuRI	GGCC	2 cut(s)	314, 429
BtgI	CCRYGG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	427
CseI	GACGC	2 cut(s)	112, 508
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	3 cut(s)	40, 328, 517
CviJI	RGCY	9 cut(s)	22, 120, 202, 208, 212, 240, 314, 347, 429
CviKI_1	RGCY	9 cut(s)	22, 120, 202, 208, 212, 240, 314, 347, 429
CviQI	GTAC	1 cut(s)	389
DpnI	GATC	3 cut(s)	27, 92, 489
DpnII	GATC	3 cut(s)	25, 90, 487
DriI	GACNNNNNGTC	1 cut(s)	241
Eam1105I	GACNNNNNGTC	1 cut(s)	241
Ecl136II	GAGCTC	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	39, 315
Eco147I	AGGCCT	1 cut(s)	314
Eco24I	GRGCYC	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	22
EcoRI	GAATTC	2 cut(s)	397, 415
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	2 cut(s)	39, 315
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	2 cut(s)	39, 315
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	3 cut(s)	43, 331, 520
FaiI	YATR	7 cut(s)	41, 284, 286, 305, 329, 404, 518
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	3 cut(s)	39, 327, 516
FauI	CCCGC	1 cut(s)	281
FauNDI	CATATG	1 cut(s)	284
Fnu4HI	GCNGC	4 cut(s)	59, 121, 345, 466
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	4 cut(s)	59, 121, 345, 466
FspBI	CTAG	3 cut(s)	117, 209, 571
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	4 cut(s)	59, 121, 345, 466
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	2 cut(s)	314, 429
HapII	CCGG	2 cut(s)	213, 443
HgaI	GACGC	2 cut(s)	112, 508
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	500
Hin1II	CATG	3 cut(s)	43, 331, 520
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	4 cut(s)	83, 190, 268, 523
HpaII	CCGG	2 cut(s)	213, 443
HphI	GGTGA	1 cut(s)	362
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	2 cut(s)	66, 272
HpyAV	CCTTC	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	135, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	500
Hsp92II	CATG	3 cut(s)	43, 331, 520
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	3 cut(s)	25, 90, 487
LpnPI	CCDG	9 cut(s)	152, 179, 226, 254, 296, 386, 410, 454, 456
Lsp1109I	GCAGC	3 cut(s)	45, 356, 477
LweI	GCATC	2 cut(s)	21, 45
MaeI	CTAG	3 cut(s)	117, 209, 571
MaeIII	GTNAC	4 cut(s)	34, 191, 323, 349
MalI	GATC	3 cut(s)	27, 92, 489
MboI	GATC	3 cut(s)	25, 90, 487
MboII	GAAGA	6 cut(s)	16, 99, 118, 240, 463, 466
MflI	RGATCY	1 cut(s)	487
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	3 cut(s)	46, 397, 415
MlyI	GAGTC	3 cut(s)	77, 199, 262
MmeI	TCCRAC	2 cut(s)	258, 273
MspI	CCGG	2 cut(s)	213, 443
MspR9I	CCNGG	2 cut(s)	167, 443
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	285
NciI	CCSGG	1 cut(s)	443
NcoI	CCATGG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	284
NdeII	GATC	3 cut(s)	25, 90, 487
NheI	GCTAGC	1 cut(s)	208
NlaIII	CATG	3 cut(s)	43, 331, 520
NmeAIII	GCCGAG	2 cut(s)	228, 279
NmuCI	GTSAC	3 cut(s)	191, 323, 349
PaeR7I	CTCGAG	1 cut(s)	66
PceI	AGGCCT	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 251
PfeI	GAWTC	1 cut(s)	523
PkrI	GCNGC	4 cut(s)	60, 122, 346, 467
PleI	GAGTC	3 cut(s)	77, 198, 262
PpsI	GAGTC	3 cut(s)	77, 198, 262
Psp124BI	GAGCTC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	487
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
SacI	GAGCTC	1 cut(s)	24
SatI	GCNGC	4 cut(s)	59, 121, 345, 466
Sau3AI	GATC	3 cut(s)	25, 90, 487
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	3 cut(s)	77, 199, 262
ScrFI	CCNGG	2 cut(s)	167, 443
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	3 cut(s)	24, 101, 310
SfaNI	GCATC	2 cut(s)	21, 45
SfcI	CTRYAG	1 cut(s)	303
Sfr274I	CTCGAG	1 cut(s)	66
SlaI	CTCGAG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
Sse9I	AATT	3 cut(s)	46, 397, 415
SseBI	AGGCCT	1 cut(s)	314
SsiI	CCGC	2 cut(s)	121, 288
SspMI	CTAG	3 cut(s)	117, 209, 571
SstI	GAGCTC	1 cut(s)	24
StuI	AGGCCT	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	165, 441
StyI	CCWWGG	2 cut(s)	39, 315
TaqI	TCGA	5 cut(s)	24, 67, 129, 227, 395
TasI	AATT	3 cut(s)	46, 397, 415
TatI	WGTACW	1 cut(s)	388
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	523
TseFI	GTSAC	3 cut(s)	191, 323, 349
TseI	GCWGC	3 cut(s)	58, 344, 465
Tsp45I	GTSAC	3 cut(s)	191, 323, 349
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	399
XapI	RAATTY	2 cut(s)	397, 415
XhoI	CTCGAG	1 cut(s)	66
XspI	CTAG	3 cut(s)	117, 209, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.