AT3G42670

SNF2 domain-containing protein CLASSY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005309
Physical Location & Seq
Reverse (-)
14755798 .. 14760629
4832 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G42670.1

Sequence Viewer

Length: 3771 bp
ATGAAGAGAAAGCATTACTTTGAGTTTAACCATCCATTTAATCCATGTCCTTTCGAGGTGTTCTGCTGGGGGACATGGAAGGCCGTGGAGTACTTAAGGATCGAGAATGGAACGATGACAATGCGTCTCTTAGAAAATGGACAAGTTTTGGATGATATAAAACCATTTCAGAGGCTTCGAATTAGATCAAGAAAGGCGACTTTGATCGACTGTACTTCTTTTTTAAGACCCGGTATCGATGTTTGCGTTCTTTATCAGAGAGATGAAGAGACTCCAGAACCAGTTTGGGTGGATGCAAGGGTTTTATCTATAGAGAGGAAGCCTCATGAATCTGAATGCTTGTGTACGTTCCATGTCAGTGTTTATATAGACCAAGGCTGCATTGGTTTGGAGAAGCATAGAATGAATAAAGTTCCGGTACTCGTGGGACTCAACGAAATCGCCATCCTTCAAAAGTTTTGCAAGGAACAAAGCTTGGACCGTTACTATAGATGGAGATACTCTGAGGACTGTTCTTCGTTGGTGAAAACAAGACTAAACTTAGGGAAGTTCTTGCCTGATCTTACATGGTTGCTTGTTACATCAGTTTTGAAAAACATTGTGTTTCAGATTAGAACCGTTCACGAGAAGATGGTTTATCAGATTGTGACGGATGAAGATTGCGAAGGCTCTAGTAGCTCTTTGAGTGCAATGAACATTACGGTTGAAGACGGTGTTGTCATGTCTAAGGTTGTTTTGTTCAATCCAGCTGAGGATACTTGTCAAGATAGTGATGTAAAGGAGGAGATTGAAGAGGAGGTAATGGAGCTGCGTCGGTCCAAGAGAAGAAGCGGGCGGCCTGAGAGATACGGAGACTCTGAGATTCAGCCGGATTCGAAGGATGGATGGGTAAGGATGATGCCATATAGGTACAACATATGGAATGTTTCAAGTGATGATGATGATGAAGAAGAAGATTGCGAGGATGATAAAGATACTGATGATGATTTATACTTACCGTTATCGCATTTACTTAGAAAGAAAGGAAGCAAAAAGGGATTTAGTAAGGATAAGCAGAGAGAGATAGTTTTGGTAGACAAAACTGAGAGGAAGAAGAGAAAGAAAACAGAGGGATTTAGTCGAAGTTGTGAGCTTTCGGTTATTCCTTTCACTCCTGTCTTTGAACCTATACCGTTGGAACAGTTTGGTCTCAATGCAAATAGTTTGTGTGGTGGTGTCTCTGGAAATTTGATGGATGAGATCGATAAGTATCGTAGTAAAGCAGCGAAATACGGGAAGAAGAAGAAGAAGAAGATTGAAATGGAAGAGATGGAATCTGATCTAGGTTGGAATGGACCTATTGGGAATGTGGTTCATAAAAGAAATGGACCGCATTCTCGAATAAGGTCCGTTTCTAGGGAAACCGGAGTTTCTGAGGAACCGCAGATTTATAAGAAGAGAACGTTGAGCGCAGGTGCGTATAACAAGTTGATAGACTCGTACATGAGTAGAATTGATTCTACAATTGCAGCCAAGGACAAAGCAACCAATGTTGTTGAGCAGTGGCAAGGGTTAAAGAACCCCGCAAGCTTTTCGATCGAAGCCGAAGAAAGGTTGAGTGAGGAGGAGGAGGATGATGGCGAGACTTCAGAGAATGAGATTCTATGGAGGGAAATGGAACTATGCTTGGCTTCTTCTTACATTCTTGATGACCATGAGGTGAGAGTGGATAACGAGGCGTTCCATAAAGCAACCTGTGATTGTGAACATGACTATGAATTGAATGAAGAAATCGGAATGTGTTGCAGATTGTGTGGTCATGTAGGAACTGAGATAAAACATGTTTCTGCACCTTTTGCGCGGCACAAGAAATGGACGACGGAGACTAAGCAAATCAACGAAGATGACATTAATACTACTATAGTTAACCAAGATGGAGTTGAGAGCCATACTTTCACTATACCAGTTGCTTCCTCAGATATGCCATCGGCTGAAGAAAGTGACAATGTCTGGTCTTTAATACCTCAGCTTAAGAGAAAACTGCATTTGCACCAGAAAAAAGCTTTTGAGTTTCTCTGGAAGAACCTAGCCGGGTCAGTGGTTCCCGCGATGATGGATCCGAGTTCAGATAAGATAGGTGGGTGTGTAGTTTCTCATACTCCCGGAGCAGGAAAAACATTTCTAATCATAGCTTTTCTCGCGAGCTACTTGAAGATATTTCCGGGTAAAAGACCTTTGGTTCTTGCTCCAAAAACAACTTTGTACACTTGGTACAAGGAGTTCATCAAATGGGAGATTCCGGTCCCTGTTCACTTGCTCCATGGTCGTAGAACCTACTGTATGTCCAAAGAGAAGACCATTCAGTTCGAGGGAATTCCAAAACCAAGCCAAGATGTTATGCATGTTCTTGACTGTTTAGACAAAATCCAGAAATGGCATGCACAGCCGAGTGTTCTTGTAATGGGTTACACATCGTTTCTAACTTTGATGAGGGAAGATTCAAAGTTTGCTCATAGAAAGTACATGGCTAAAGTACTGAGAGAGTCTCCTGGATTACTGGTTCTAGACGAGGGACATAACCCGAGGAGTACCAAGTCGAGATTACGAAAGGCCTTGATGAAAGTTGATACTGACTTGAGGATTCTGCTTTCTGGTACATTGTTTCAGAACAACTTCTGTGAGTACTTCAACACTTTGTGCTTGGCTAGACCCAAGTTTGTTCATGAGGTTCTAGTGGAGTTGGACAAGAAGTTCCAGACCAACCAAGCCGAGCAAAAGGCGCCTCACTTGCTTGAAAATAGAGCTCGGAAGTTCTTCCTTGACATTATAGCCAAGAAGATTGACACAAAAGTGGGCGATGAGCGCTTGCAGGGTCTCAACATGTTGAGGAATATGACGAGTGGTTTCATCGATAACTATGAAGGGAGTGGAAGCGGAAGTGGTGATGTTCTCCCAGGTTTGCAGATTTACACATTGTTGATGAATTCCACTGATGTACAGCACAAGAGTCTTACCAAACTTCAGAACATAATGTCAACTTACCATGGATATCCACTCGAGCTCGAGTTACTCATAACGTTAGCTGCTATCCATCCTTGGTTGGTCAAAACCACAACCTGTTGCGCCAAATTCTTCAACCCTCAGGAGCTTTTAGAGATTGAGAAGCTCAAGCACGATGCAAAGAAAGGATCAAAAGTCATGTTTGTGCTTAATCTTGTGTTCCGGGTGGTCAAGAGGGAGAAAATCCTCATATTTTGTCACAACATTGCGCCGATCCGCCTGTTTCTTGAGCTGTTCGAGAATGTATTCAGGTGGAAGAGAGGCCGAGAGCTCCTGACCTTGACAGGGGATCTCGAGCTGTTTGAAAGAGGCAGAGTAATAGACAAATTTGAAGAGCCAGGAGGCCAGTCCCGTGTTCTGCTGGCTTCGATTACAGCCTGTGCAGAAGGCATCAGTCTAACCGCTGCTTCACGGGTGATCATGCTTGATTCAGAGTGGAATCCTTCTAAGACAAAGCAAGCAATCGCACGTGCATTCAGACCGGGACAGCAGAAAGTGGTGTACGTTTACCAGCTCTTGTCGAGAGGAACACTTGAAGAAGACAAATACAGGAGGACGACCTGGAAAGAATGGGTCTCCAGTATGATTTTCAGTGAAGAATTTGTGGAGGACCCATCTCAATGGCAAGCTGAGAAGATTGAGGACGATGTTCTTAGAGAAATCGTGGAGGAAGACAAAGTCAAATCCTTCCATATGATCATGAAGAACGAGAAAGCTTCAACAGGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0033170 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C Methyltransf_11 Methyltransf_21 SNF2_N

Protein Analysis

1256

Amino Acids

144.57

Weight (kDa)

6.47

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 26 - 121 1.9e-06 SAWADEE domain
ResIII PF04851 673 - 880 4.1e-07 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 677 - 940 1.1e-19 SNF2-related domain
Helicase_C PF00271 1059 - 1175 4.5e-16 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1431
AarI CACCTGC 1 cut(s) 1442
AasI GACNNNNNNGTC 1 cut(s) 716
Acc36I ACCTGC 1 cut(s) 1442
AccB1I GGYRCC 1 cut(s) 2758
AccI GTMKAC 1 cut(s) 1074
AccII CGCG 3 cut(s) 1840, 2087, 2180
AclI AACGTT 2 cut(s) 1442, 3056
AclWI GGATC 6 cut(s) 107, 2090, 2103, 3175, 3247, 3336
AcsI RAATTY 6 cut(s) 1225, 2352, 2962, 3107, 3365, 3638
AcuI CTGAAG 3 cut(s) 1611, 1992, 2984
AcvI CACGTG 1 cut(s) 3509
AcyI GRCGYC 1 cut(s) 2759
AdeI CACNNNGTG 1 cut(s) 2676
AfeI AGCGCT 1 cut(s) 2843
AfiI CCNNNNNNNGG 4 cut(s) 1395, 1590, 2147, 3324
AflII CTTAAG 2 cut(s) 94, 2009
AflIII ACRYGT 2 cut(s) 1819, 2859
AhdI GACNNNNNGTC 1 cut(s) 123
AjnI CCWGG 4 cut(s) 2527, 2932, 3376, 3599
AleI CACNNNNGTG 1 cut(s) 2828
AloI GAACNNNNNNTCC 4 cut(s) 2523, 2555, 2714, 2746
Alw21I GWGCWC 3 cut(s) 2785, 3042, 3312
AlwI GGATC 6 cut(s) 107, 2090, 2103, 3175, 3247, 3336
Ama87I CYCGRG 4 cut(s) 2560, 3035, 3041, 3332
Aor51HI AGCGCT 1 cut(s) 2843
AoxI GGCC 5 cut(s) 81, 836, 2589, 3301, 3382
ApeKI GCWGC 6 cut(s) 378, 808, 1262, 1508, 3062, 3443
ApoI RAATTY 6 cut(s) 1225, 2352, 2962, 3107, 3365, 3638
AseI ATTAAT 1 cut(s) 1890
Asp700I GAANNNNTTC 4 cut(s) 1495, 2651, 2792, 3284
AspLEI GCGC 6 cut(s) 1451, 1840, 2761, 2844, 3104, 3250
AspS9I GGNCC 7 cut(s) 478, 816, 1334, 1367, 1386, 2281, 3649
AsuC2I CCSGG 6 cut(s) 231, 2071, 2142, 2202, 3203, 3522
AsuHPI GGTGA 4 cut(s) 535, 1711, 2933, 3466
AsuII TTCGAA 2 cut(s) 178, 875
AvaI CYCGRG 4 cut(s) 2560, 3035, 3041, 3332
AvaII GGWCC 7 cut(s) 478, 816, 1334, 1367, 1386, 2281, 3649
AxyI CCTNAGG 1 cut(s) 3120
BamHI GGATCC 1 cut(s) 2095
BanI GGYRCC 1 cut(s) 2758
BanII GRGCYC 3 cut(s) 2785, 3042, 3312
BauI CACGAG 2 cut(s) 422, 623
BbrPI CACGTG 1 cut(s) 3509
BbsI GAAGAC 4 cut(s) 714, 2339, 3585, 3717
Bbv12I GWGCWC 3 cut(s) 2785, 3042, 3312
BbvCI CCTCAGC 2 cut(s) 750, 2004
BbvI GCAGC 6 cut(s) 365, 795, 1274, 1520, 3049, 3430
BceAI ACGGC 1 cut(s) 68
BcgI CGANNNNNNTGC 4 cut(s) 103, 137, 1554, 1588
BciT130I CCWGG 4 cut(s) 2529, 2934, 3378, 3601
BciVI GTATCC 1 cut(s) 748
BclI TGATCA 2 cut(s) 3456, 3735
BcnI CCSGG 6 cut(s) 231, 2071, 2142, 2202, 3203, 3522
BfaI CTAG 7 cut(s) 672, 1322, 1395, 2066, 2543, 2685, 2711
BfmI CTRYAG 3 cut(s) 309, 487, 1899
BfoI RGCGCY 2 cut(s) 2762, 2845
BfrI CTTAAG 2 cut(s) 94, 2009
BfuAI ACCTGC 1 cut(s) 1442
BfuI GTATCC 1 cut(s) 748
BisI GCNGC 8 cut(s) 379, 809, 836, 1263, 1509, 1841, 3063, 3444
BlsI GCNGC 8 cut(s) 380, 810, 837, 1264, 1510, 1842, 3064, 3445
BmcAI AGTACT 3 cut(s) 92, 2514, 2663
Bme18I GGWCC 7 cut(s) 478, 816, 1334, 1367, 1386, 2281, 3649
BmeRI GACNNNNNGTC 1 cut(s) 123
BmeT110I CYCGRG 4 cut(s) 2560, 3035, 3041, 3332
BmgT120I GGNCC 7 cut(s) 478, 816, 1334, 1367, 1386, 2281, 3649
BmiI GGNNCC 6 cut(s) 1419, 2082, 2097, 2283, 2760, 3651
BmsI GCATC 4 cut(s) 283, 888, 3145, 3438
BpiI GAAGAC 4 cut(s) 714, 2339, 3585, 3717
BplI GAGNNNNNCTC 4 cut(s) 307, 339, 2509, 2541
BpmI CTGGAG 2 cut(s) 258, 3601
Bpu10I CCTNAGC 2 cut(s) 750, 2004
Bpu14I TTCGAA 2 cut(s) 178, 875
BpuEI CTTGAG 3 cut(s) 2635, 3131, 3287
BpuMI CCSGG 6 cut(s) 231, 2071, 2142, 2202, 3203, 3522
Bsa29I ATCGAT 3 cut(s) 237, 1242, 2889
BsaAI YACGTR 1 cut(s) 3509
BsaBI GATNNNNATC 1 cut(s) 1248
BsaHI GRCGYC 1 cut(s) 2759
BsaI GGTCTC 3 cut(s) 1193, 2858, 3619
BsaJI CCNNGG 8 cut(s) 84, 373, 1512, 2299, 2561, 2932, 3022, 3074
BsaWI WCCGGW 3 cut(s) 415, 1403, 2278
Bsc4I CCNNNNNNNGG 4 cut(s) 1395, 1590, 2147, 3324
Bse1I ACTGG 5 cut(s) 281, 1943, 2541, 3385, 3618
Bse21I CCTNAGG 1 cut(s) 3120
Bse3DI GCAATG 2 cut(s) 696, 3243
Bse8I GATNNNNATC 1 cut(s) 1248
BseBI CCWGG 4 cut(s) 2529, 2934, 3378, 3601
BseCI ATCGAT 3 cut(s) 237, 1242, 2889
BseDI CCNNGG 8 cut(s) 84, 373, 1512, 2299, 2561, 2932, 3022, 3074
BseJI GATNNNNATC 1 cut(s) 1248
BseLI CCNNNNNNNGG 4 cut(s) 1395, 1590, 2147, 3324
BseMI GCAATG 2 cut(s) 696, 3243
BseNI ACTGG 5 cut(s) 281, 1943, 2541, 3385, 3618
BseRI GAGGAG 6 cut(s) 797, 809, 1616, 1619, 1622, 2578
BseXI GCAGC 6 cut(s) 365, 795, 1274, 1520, 3049, 3430
BseYI CCCAGC 1 cut(s) 66
BsgI GTGCAG 2 cut(s) 1812, 3441
Bsh1236I CGCG 3 cut(s) 1840, 2087, 2180
Bsh1285I CGRYCG 1 cut(s) 1578
BshFI GGCC 5 cut(s) 83, 838, 2591, 3303, 3384
BshNI GGYRCC 1 cut(s) 2758
BshVI ATCGAT 3 cut(s) 237, 1242, 2889
BsiEI CGRYCG 1 cut(s) 1578
BsiHKAI GWGCWC 3 cut(s) 2785, 3042, 3312
BsiHKCI CYCGRG 4 cut(s) 2560, 3035, 3041, 3332
BslFI GGGAC 6 cut(s) 85, 441, 2267, 2565, 3373, 3537
BslI CCNNNNNNNGG 4 cut(s) 1395, 1590, 2147, 3324
BsmBI CGTCTC 1 cut(s) 131
BsmFI GGGAC 6 cut(s) 85, 441, 2267, 2565, 3373, 3537
BsmI GAATGC 3 cut(s) 341, 1372, 3512
BsnI GGCC 5 cut(s) 83, 838, 2591, 3303, 3384
Bso31I GGTCTC 3 cut(s) 1193, 2858, 3619
BsoBI CYCGRG 4 cut(s) 2560, 3035, 3041, 3332
Bsp119I TTCGAA 2 cut(s) 178, 875
Bsp1286I GDGCHC 3 cut(s) 2785, 3042, 3312
Bsp1407I TGTACA 2 cut(s) 2241, 2974
Bsp19I CCATGG 2 cut(s) 2299, 3022
Bsp68I TCGCGA 1 cut(s) 2180
BspANI GGCC 5 cut(s) 83, 838, 2591, 3303, 3384
BspDI ATCGAT 3 cut(s) 237, 1242, 2889
BspFNI CGCG 3 cut(s) 1840, 2087, 2180
BspHI TCATGA 3 cut(s) 325, 2701, 3738
BspLI GGNNCC 6 cut(s) 1419, 2082, 2097, 2283, 2760, 3651
BspMI ACCTGC 1 cut(s) 1442
BspPI GGATC 6 cut(s) 107, 2090, 2103, 3175, 3247, 3336
BspQI GCTCTTC 1 cut(s) 3366
BspT104I TTCGAA 2 cut(s) 178, 875
BspT107I GGYRCC 1 cut(s) 2758
BspTI CTTAAG 2 cut(s) 94, 2009
BspTNI GGTCTC 3 cut(s) 1193, 2858, 3619
BsrDI GCAATG 2 cut(s) 696, 3243
BsrGI TGTACA 2 cut(s) 2241, 2974
BsrI ACTGG 5 cut(s) 281, 1943, 2541, 3385, 3618
BssECI CCNNGG 8 cut(s) 84, 373, 1512, 2299, 2561, 2932, 3022, 3074
BssNI GRCGYC 1 cut(s) 2759
BssSI CACGAG 2 cut(s) 422, 623
BssT1I CCWWGG 5 cut(s) 373, 1512, 2299, 3022, 3074
Bst2BI CACGAG 2 cut(s) 422, 623
Bst2UI CCWGG 4 cut(s) 2529, 2934, 3378, 3601
Bst6I CTCTTC 7 cut(s) 261, 786, 1088, 1299, 1430, 3290, 3366
BstACI GRCGYC 1 cut(s) 2759
BstAFI CTTAAG 2 cut(s) 94, 2009
BstAPI GCANNNNNTGC 1 cut(s) 1835
BstAUI TGTACA 2 cut(s) 2241, 2974
BstBAI YACGTR 1 cut(s) 3509
BstBI TTCGAA 2 cut(s) 178, 875
BstC8I GCNNGC 8 cut(s) 833, 1567, 2182, 2418, 2846, 3402, 3498, 3666
BstDSI CCRYGG 3 cut(s) 84, 2299, 3022
BstFNI CGCG 3 cut(s) 1840, 2087, 2180
BstH2I RGCGCY 2 cut(s) 2762, 2845
BstHHI GCGC 6 cut(s) 1451, 1840, 2761, 2844, 3104, 3250
BstMCI CGRYCG 1 cut(s) 1578
BstMWI GCNNNNNNNGC 7 cut(s) 675, 1835, 2177, 2422, 2758, 2767, 2841
BstNI CCWGG 4 cut(s) 2529, 2934, 3378, 3601
BstNSI RCATGY 4 cut(s) 1823, 2384, 2420, 2863
BstSFI CTRYAG 3 cut(s) 309, 487, 1899
BstUI CGCG 3 cut(s) 1840, 2087, 2180
BstV1I GCAGC 6 cut(s) 365, 795, 1274, 1520, 3049, 3430
BstV2I GAAGAC 4 cut(s) 714, 2339, 3585, 3717
BstX2I RGATCY 2 cut(s) 2095, 3328
BstXI CCANNNNNNTGG 1 cut(s) 3660
BstYI RGATCY 2 cut(s) 2095, 3328
Bsu15I ATCGAT 3 cut(s) 237, 1242, 2889
Bsu36I CCTNAGG 1 cut(s) 3120
BsuI GTATCC 1 cut(s) 748
BsuRI GGCC 5 cut(s) 83, 838, 2591, 3303, 3384
BsuTUI ATCGAT 3 cut(s) 237, 1242, 2889
BtgI CCRYGG 3 cut(s) 84, 2299, 3022
BtgZI GCGATG 2 cut(s) 2102, 2850
BtsI GCAGTG 1 cut(s) 1547
BtsIMutI CAGTG 5 cut(s) 364, 1547, 2082, 2967, 3637
BtuMI TCGCGA 1 cut(s) 2180
BveI ACCTGC 1 cut(s) 1442
Cac8I GCNNGC 8 cut(s) 833, 1567, 2182, 2418, 2846, 3402, 3498, 3666
CciI TCATGA 3 cut(s) 325, 2701, 3738
CfoI GCGC 6 cut(s) 1451, 1840, 2761, 2844, 3104, 3250
Cfr13I GGNCC 7 cut(s) 478, 816, 1334, 1367, 1386, 2281, 3649
ClaI ATCGAT 3 cut(s) 237, 1242, 2889
CseI GACGC 2 cut(s) 113, 800
DinI GGCGCC 1 cut(s) 2760
DraIII CACNNNGTG 1 cut(s) 2676
DrdI GACNNNNNNGTC 1 cut(s) 716
DriI GACNNNNNGTC 1 cut(s) 123
DseDI GACNNNNNNGTC 1 cut(s) 716
Eam1104I CTCTTC 7 cut(s) 261, 786, 1088, 1299, 1430, 3290, 3366
Eam1105I GACNNNNNGTC 1 cut(s) 123
EarI CTCTTC 7 cut(s) 261, 786, 1088, 1299, 1430, 3290, 3366
EciI GGCGGA 1 cut(s) 3245
Ecl136II GAGCTC 3 cut(s) 2783, 3040, 3310
Eco130I CCWWGG 5 cut(s) 373, 1512, 2299, 3022, 3074
Eco147I AGGCCT 1 cut(s) 2591
Eco24I GRGCYC 3 cut(s) 2785, 3042, 3312
Eco31I GGTCTC 3 cut(s) 1193, 2858, 3619
Eco32I GATATC 1 cut(s) 3029
Eco47I GGWCC 7 cut(s) 478, 816, 1334, 1367, 1386, 2281, 3649
Eco47III AGCGCT 1 cut(s) 2843
Eco53kI GAGCTC 3 cut(s) 2783, 3040, 3310
Eco57I CTGAAG 3 cut(s) 1611, 1992, 2984
Eco72I CACGTG 1 cut(s) 3509
Eco81I CCTNAGG 1 cut(s) 3120
Eco88I CYCGRG 4 cut(s) 2560, 3035, 3041, 3332
EcoICRI GAGCTC 3 cut(s) 2783, 3040, 3310
EcoO109I RGGNCCY 1 cut(s) 3649
EcoRI GAATTC 2 cut(s) 2352, 2962
EcoRII CCWGG 4 cut(s) 2527, 2932, 3376, 3599
EcoRV GATATC 1 cut(s) 3029
EcoT14I CCWWGG 5 cut(s) 373, 1512, 2299, 3022, 3074
EcoT22I ATGCAT 1 cut(s) 2382
EcoT38I GRGCYC 3 cut(s) 2785, 3042, 3312
EgeI GGCGCC 1 cut(s) 2760
EheI GGCGCC 1 cut(s) 2760
ErhI CCWWGG 5 cut(s) 373, 1512, 2299, 3022, 3074
Esp3I CGTCTC 1 cut(s) 131
FalI AAGNNNNNCTT 1 cut(s) 34
FaqI GGGAC 6 cut(s) 85, 441, 2267, 2565, 3373, 3537
FauI CCCGC 3 cut(s) 824, 1570, 2092
FauNDI CATATG 2 cut(s) 917, 3732
FbaI TGATCA 2 cut(s) 3456, 3735
FblI GTMKAC 1 cut(s) 1074
Fnu4HI GCNGC 8 cut(s) 379, 809, 836, 1263, 1509, 1841, 3063, 3444
FriOI GRGCYC 3 cut(s) 2785, 3042, 3312
Fsp4HI GCNGC 8 cut(s) 379, 809, 836, 1263, 1509, 1841, 3063, 3444
FspBI CTAG 7 cut(s) 672, 1322, 1395, 2066, 2543, 2685, 2711
GlaI GCGC 6 cut(s) 1450, 1839, 2760, 2843, 3103, 3249
GluI GCNGC 8 cut(s) 379, 809, 836, 1263, 1509, 1841, 3063, 3444
GsaI CCCAGC 1 cut(s) 70
GsuI CTGGAG 2 cut(s) 258, 3601
HaeII RGCGCY 2 cut(s) 2762, 2845
HaeIII GGCC 5 cut(s) 83, 838, 2591, 3303, 3384
HgaI GACGC 2 cut(s) 113, 800
HhaI GCGC 6 cut(s) 1451, 1840, 2761, 2844, 3104, 3250
Hin1I GRCGYC 1 cut(s) 2759
Hin6I GCGC 6 cut(s) 1449, 1838, 2759, 2842, 3102, 3248
HinP1I GCGC 6 cut(s) 1449, 1838, 2759, 2842, 3102, 3248
HincII GTYRAC 2 cut(s) 1906, 3015
HindII GTYRAC 2 cut(s) 1906, 3015
HindIII AAGCTT 4 cut(s) 472, 1567, 2040, 3753
HpaI GTTAAC 1 cut(s) 1906
HphI GGTGA 4 cut(s) 535, 1711, 2933, 3466
Hpy99I CGWCG 2 cut(s) 816, 1861
HpyAV CCTTC 8 cut(s) 73, 458, 659, 871, 2894, 3419, 3492, 3736
HpyCH4IV ACGT 5 cut(s) 347, 1442, 3056, 3508, 3543
HpyF10VI GCNNNNNNNGC 7 cut(s) 675, 1835, 2177, 2422, 2758, 2767, 2841
HpySE526I ACGT 5 cut(s) 347, 1442, 3056, 3508, 3543
Hsp92I GRCGYC 1 cut(s) 2759
HspAI GCGC 6 cut(s) 1449, 1838, 2759, 2842, 3102, 3248
KasI GGCGCC 1 cut(s) 2758
Ksp22I TGATCA 2 cut(s) 3456, 3735
KspAI GTTAAC 1 cut(s) 1906
LguI GCTCTTC 1 cut(s) 3366
LmnI GCTCC 6 cut(s) 805, 2144, 2230, 2301, 3124, 3315
Lsp1109I GCAGC 6 cut(s) 365, 795, 1274, 1520, 3049, 3430
LweI GCATC 4 cut(s) 283, 888, 3145, 3438
MaeI CTAG 7 cut(s) 672, 1322, 1395, 2066, 2543, 2685, 2711
MaeII ACGT 5 cut(s) 347, 1442, 3056, 3508, 3543
MaeIII GTNAC 7 cut(s) 482, 577, 646, 1979, 2444, 3045, 3236
MfeI CAATTG 1 cut(s) 1503
MflI RGATCY 2 cut(s) 2095, 3328
MhlI GDGCHC 3 cut(s) 2785, 3042, 3312
Mly113I GGCGCC 1 cut(s) 2759
MlyI GAGTC 6 cut(s) 265, 423, 848, 1469, 2531, 2995
MmeI TCCRAC 3 cut(s) 1155, 1307, 2700
Mph1103I ATGCAT 1 cut(s) 2382
MroXI GAANNNNTTC 4 cut(s) 1495, 2651, 2792, 3284
MslI CAYNNNNRTG 5 cut(s) 357, 1752, 2828, 3182, 3658
MspA1I CMGCKG 2 cut(s) 749, 3443
MspCI CTTAAG 2 cut(s) 94, 2009
MunI CAATTG 1 cut(s) 1503
Mva1269I GAATGC 3 cut(s) 341, 1372, 3512
MvaI CCWGG 4 cut(s) 2529, 2934, 3378, 3601
MvnI CGCG 3 cut(s) 1840, 2087, 2180
MwoI GCNNNNNNNGC 7 cut(s) 675, 1835, 2177, 2422, 2758, 2767, 2841
NarI GGCGCC 1 cut(s) 2759
NciI CCSGG 6 cut(s) 231, 2071, 2142, 2202, 3203, 3522
NcoI CCATGG 2 cut(s) 2299, 3022
NdeI CATATG 2 cut(s) 917, 3732
NlaIV GGNNCC 6 cut(s) 1419, 2082, 2097, 2283, 2760, 3651
NmeAIII GCCGAG 3 cut(s) 2451, 2773, 3329
NmuCI GTSAC 3 cut(s) 646, 1979, 3236
NruI TCGCGA 1 cut(s) 2180
NsiI ATGCAT 1 cut(s) 2382
NspI RCATGY 4 cut(s) 1823, 2384, 2420, 2863
NspV TTCGAA 2 cut(s) 178, 875
OliI CACNNNNGTG 1 cut(s) 2828
PaeI GCATGC 1 cut(s) 2420
PaeR7I CTCGAG 3 cut(s) 3035, 3041, 3332
PagI TCATGA 3 cut(s) 325, 2701, 3738
PaqCI CACCTGC 1 cut(s) 1442
PceI AGGCCT 1 cut(s) 2591
PciI ACATGT 2 cut(s) 1819, 2859
PciSI GCTCTTC 1 cut(s) 3366
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PctI GAATGC 3 cut(s) 341, 1372, 3512
PdmI GAANNNNTTC 4 cut(s) 1495, 2651, 2792, 3284
PflFI GACNNNGTC 2 cut(s) 1985, 3716
PfoI TCCNGGA 2 cut(s) 2140, 2527
PkrI GCNGC 8 cut(s) 380, 810, 837, 1264, 1510, 1842, 3064, 3445
Ple19I CGATCG 1 cut(s) 1578
PleI GAGTC 6 cut(s) 265, 423, 848, 1469, 2530, 2994
PluTI GGCGCC 1 cut(s) 2762
PmaCI CACGTG 1 cut(s) 3509
PmlI CACGTG 1 cut(s) 3509
PpsI GAGTC 6 cut(s) 265, 423, 848, 1469, 2530, 2994
Ppu21I YACGTR 1 cut(s) 3509
PpuMI RGGWCCY 1 cut(s) 3649
PscI ACATGT 2 cut(s) 1819, 2859
PshBI ATTAAT 1 cut(s) 1890
PsiI TTATAA 1 cut(s) 1431
Psp124BI GAGCTC 3 cut(s) 2785, 3042, 3312
Psp1406I AACGTT 2 cut(s) 1442, 3056
Psp5II RGGWCCY 1 cut(s) 3649
Psp6I CCWGG 4 cut(s) 2527, 2932, 3376, 3599
PspCI CACGTG 1 cut(s) 3509
PspFI CCCAGC 1 cut(s) 66
PspGI CCWGG 4 cut(s) 2527, 2932, 3376, 3599
PspN4I GGNNCC 6 cut(s) 1419, 2082, 2097, 2283, 2760, 3651
PspPI GGNCC 7 cut(s) 478, 816, 1334, 1367, 1386, 2281, 3649
PspPPI RGGWCCY 1 cut(s) 3649
PspXI VCTCGAGB 2 cut(s) 3035, 3041
PsrI GAACNNNNNNTAC 2 cut(s) 2243, 2275
PsuI RGATCY 2 cut(s) 2095, 3328
PsyI GACNNNGTC 2 cut(s) 1985, 3716
PvuI CGATCG 1 cut(s) 1578
PvuII CAGCTG 1 cut(s) 749
RruI TCGCGA 1 cut(s) 2180
RseI CAYNNNNRTG 5 cut(s) 357, 1752, 2828, 3182, 3658
SacI GAGCTC 3 cut(s) 2785, 3042, 3312
SapI GCTCTTC 1 cut(s) 3366
SatI GCNGC 8 cut(s) 379, 809, 836, 1263, 1509, 1841, 3063, 3444
Sau96I GGNCC 7 cut(s) 478, 816, 1334, 1367, 1386, 2281, 3649
ScaI AGTACT 3 cut(s) 92, 2514, 2663
SchI GAGTC 6 cut(s) 265, 423, 848, 1469, 2531, 2995
SduI GDGCHC 3 cut(s) 2785, 3042, 3312
SfaNI GCATC 4 cut(s) 283, 888, 3145, 3438
SfcI CTRYAG 3 cut(s) 309, 487, 1899
SfoI GGCGCC 1 cut(s) 2760
Sfr274I CTCGAG 3 cut(s) 3035, 3041, 3332
SfuI TTCGAA 2 cut(s) 178, 875
SinI GGWCC 7 cut(s) 478, 816, 1334, 1367, 1386, 2281, 3649
SlaI CTCGAG 3 cut(s) 3035, 3041, 3332
SmiMI CAYNNNNRTG 5 cut(s) 357, 1752, 2828, 3182, 3658
SmlI CTYRAG 8 cut(s) 94, 2009, 2614, 3035, 3041, 3146, 3266, 3332
SmoI CTYRAG 8 cut(s) 94, 2009, 2614, 3035, 3041, 3146, 3266, 3332
SphI GCATGC 1 cut(s) 2420
SseBI AGGCCT 1 cut(s) 2591
SspDI GGCGCC 1 cut(s) 2758
SspMI CTAG 7 cut(s) 672, 1322, 1395, 2066, 2543, 2685, 2711
SstI GAGCTC 3 cut(s) 2785, 3042, 3312
StuI AGGCCT 1 cut(s) 2591
StyI CCWWGG 5 cut(s) 373, 1512, 2299, 3022, 3074
TaiI ACGT 5 cut(s) 350, 1445, 3059, 3511, 3546
TaqII GACCGA 1 cut(s) 804
TatI WGTACW 7 cut(s) 90, 212, 2241, 2499, 2512, 2661, 2974
TauI GCSGC 2 cut(s) 838, 1843
TscAI CASTG 5 cut(s) 364, 1547, 2082, 2974, 3637
TseFI GTSAC 3 cut(s) 646, 1979, 3236
TseI GCWGC 6 cut(s) 378, 808, 1262, 1508, 3062, 3443
Tsp45I GTSAC 3 cut(s) 646, 1979, 3236
TspGWI ACGGA 4 cut(s) 665, 864, 1378, 1874
TspRI CASTG 5 cut(s) 364, 1547, 2082, 2974, 3637
Tth111I GACNNNGTC 2 cut(s) 1985, 3716
Vha464I CTTAAG 2 cut(s) 94, 2009
VpaK11BI GGWCC 7 cut(s) 478, 816, 1334, 1367, 1386, 2281, 3649
VspI ATTAAT 1 cut(s) 1890
XapI RAATTY 6 cut(s) 1225, 2352, 2962, 3107, 3365, 3638
XbaI TCTAGA 1 cut(s) 2542
XceI RCATGY 4 cut(s) 1823, 2384, 2420, 2863
XcmI CCANNNNNNNNNTGG 2 cut(s) 282, 380
XhoI CTCGAG 3 cut(s) 3035, 3041, 3332
XmiI GTMKAC 1 cut(s) 1074
XmnI GAANNNNTTC 4 cut(s) 1495, 2651, 2792, 3284
XspI CTAG 7 cut(s) 672, 1322, 1395, 2066, 2543, 2685, 2711
ZrmI AGTACT 3 cut(s) 92, 2514, 2663
Zsp2I ATGCAT 1 cut(s) 2382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.