MD07G1227100.v1.1

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0012881
Physical Location & Seq
Reverse (-)
30258592 .. 30259215
624 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1227100.v1.1.491

Sequence Viewer

Length: 624 bp
ATGTCTTCACCAATCCAGTTTCAAAGACCAATCAGCCCTCCTAATTATCACCACCCTACAAACACAATCCACCACAAACAATTCCAATCCCAGGCAGTCGCAGCCGCAGTCGACCTCACGCGCTACCACTCCCACGTGATGGCTCCCAACCAGTGCTGCTCTGCCGTCGTGCAATCCATCGAGGCACCTGTCCAGACCGTCTGGTCCGTCGTGCGGCGCTTCGACAACCCACAGGCCTACAAGCACTTCCTCAAGAGCTGCCACGTCATAGACGGAAACGGTGACGTAGGCACGGTCCGGGAGGTTCACGTGGTGTCGGGGCTTCCCGCGGGGTCCAGCACGGAGCGCCTGGAGATTCTGGACGACGAGCGGCACGTCATCAGCTTCAGCGTGGTGGGCGGGGACCATCGGCTGACGAACTACCGGTCGGTCACCACACTGCACGACTCACCGAACGGAGTGGGGACCGTCGTCGTCGAGTCGTACGTGGTTGACGTGCCGCCCGGGAACACGAAGGAGGAGACGTGCGTGTTTGTGGACACGATCGTGCGTTGCAACTTGCAGTCGTTGGCTCAGATCGCTGAGAGTATGGCCGATAAGCCAAACACCAAGAAACCCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

208

Amino Acids

22.75

Weight (kDa)

6.44

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 56 - 195 9.6e-19 Polyketide cyclase / dehydrase and lipid transport
Polyketide_cyc PF03364 60 - 168 8.1e-06 Polyketide cyclase / dehydrase and lipid transport
Bet_v_1 PF00407 77 - 159 7.9e-06 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05440
fragaria_vesca FvH4_7g25180
malus_domestica MD01G1158500.v1.1 MD07G1227100.v1.1
prunus_persica Prupe.2G256700_v2.0.a1
pyrus_communis pycom07g20570
rosa_chinensis RchiOBHm_Chr1g0371101
rosa_laevigata RLG00000026987
rosa_multiflora Rmu_co8363357.1_g000001 Rmu_sc0001018.1_g000033 Rmu_sc0003714.1_g000007
rosa_roxburghii Rroxscaffold_4G00286000
rosa_rugosa Rorug01G0361300
rosa_samantha Rh1AG371600 Rh1BG334900 Rh1CG348300 Rh1DG366200
rosa_wichuraiana Rw1G032680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 184
AccB7I CCANNNNNTGG 1 cut(s) 139
AccBSI CCGCTC 1 cut(s) 370
AccI GTMKAC 1 cut(s) 111
AccII CGCG 2 cut(s) 121, 329
AciI CCGC 7 cut(s) 105, 214, 327, 329, 370, 399, 500
AcoI YGGCCR 1 cut(s) 591
AcuI CTGAAG 1 cut(s) 370
AcvI CACGTG 2 cut(s) 136, 310
AdeI CACNNNGTG 1 cut(s) 313
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 3 cut(s) 91, 139, 213
AgeI ACCGGT 1 cut(s) 423
AgsI TTSAA 1 cut(s) 23
AjiI CACGTC 4 cut(s) 265, 376, 496, 525
AjnI CCWGG 2 cut(s) 90, 348
AleI CACNNNNGTG 1 cut(s) 545
AluBI AGCT 2 cut(s) 258, 384
AluI AGCT 2 cut(s) 258, 384
Alw26I GTCTC 1 cut(s) 515
Ama87I CYCGRG 1 cut(s) 503
AoxI GGCC 2 cut(s) 234, 591
ApeKI GCWGC 3 cut(s) 101, 156, 258
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
AsiGI ACCGGT 1 cut(s) 423
AspLEI GCGC 3 cut(s) 123, 219, 348
AspS9I GGNCC 5 cut(s) 204, 295, 333, 403, 465
AsuC2I CCSGG 3 cut(s) 299, 504, 505
AsuHPI GGTGA 4 cut(s) 41, 293, 424, 441
AvaI CYCGRG 1 cut(s) 503
AvaII GGWCC 5 cut(s) 204, 295, 333, 403, 465
BanI GGYRCC 1 cut(s) 184
BbrPI CACGTG 2 cut(s) 136, 310
BbvI GCAGC 3 cut(s) 113, 143, 245
BccI CCATC 3 cut(s) 133, 185, 414
BceAI ACGGC 1 cut(s) 149
BciT130I CCWGG 2 cut(s) 92, 350
BcnI CCSGG 3 cut(s) 299, 504, 505
BcoDI GTCTC 1 cut(s) 515
BfoI RGCGCY 2 cut(s) 220, 349
BisI GCNGC 7 cut(s) 102, 105, 157, 215, 259, 371, 500
BlsI GCNGC 7 cut(s) 103, 106, 158, 216, 260, 372, 501
Bme1390I CCNGG 5 cut(s) 92, 299, 350, 504, 505
Bme18I GGWCC 5 cut(s) 204, 295, 333, 403, 465
BmeT110I CYCGRG 1 cut(s) 503
BmgBI CACGTC 4 cut(s) 265, 376, 496, 525
BmgT120I GGNCC 5 cut(s) 204, 295, 333, 403, 465
BmiI GGNNCC 5 cut(s) 144, 186, 334, 404, 466
BmrFI CCNGG 5 cut(s) 92, 299, 350, 504, 505
BoxI GACNNNNGTC 1 cut(s) 470
BpmI CTGGAG 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 3 cut(s) 299, 504, 505
BsaAI YACGTR 3 cut(s) 136, 310, 487
BsaJI CCNNGG 3 cut(s) 90, 327, 503
BsaWI WCCGGW 1 cut(s) 423
BsaXI ACNNNNNCTCC 2 cut(s) 509, 539
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 139, 213
Bse118I RCCGGY 1 cut(s) 423
Bse1I ACTGG 2 cut(s) 16, 151
BseBI CCWGG 2 cut(s) 92, 350
BseDI CCNNGG 3 cut(s) 90, 327, 503
BseLI CCNNNNNNNGG 3 cut(s) 91, 139, 213
BseMII CTCAG 2 cut(s) 573, 587
BseNI ACTGG 2 cut(s) 16, 151
BseRI GAGGAG 1 cut(s) 533
BseXI GCAGC 3 cut(s) 113, 143, 245
BsgI GTGCAG 1 cut(s) 425
Bsh1236I CGCG 2 cut(s) 121, 329
Bsh1285I CGRYCG 2 cut(s) 428, 546
BshFI GGCC 2 cut(s) 236, 593
BshNI GGYRCC 1 cut(s) 184
BshTI ACCGGT 1 cut(s) 423
BsiEI CGRYCG 2 cut(s) 428, 546
BsiHKCI CYCGRG 1 cut(s) 503
BsiSI CCGG 3 cut(s) 298, 424, 504
BsiWI CGTACG 1 cut(s) 483
BslFI GGGAC 2 cut(s) 416, 478
BslI CCNNNNNNNGG 3 cut(s) 91, 139, 213
BsmAI GTCTC 1 cut(s) 515
BsmBI CGTCTC 1 cut(s) 515
BsmFI GGGAC 2 cut(s) 416, 478
BsnI GGCC 2 cut(s) 236, 593
BsoBI CYCGRG 1 cut(s) 503
Bsp143I GATC 2 cut(s) 543, 576
BspACI CCGC 7 cut(s) 105, 214, 327, 329, 370, 399, 500
BspANI GGCC 2 cut(s) 236, 593
BspCNI CTCAG 2 cut(s) 574, 586
BspFNI CGCG 2 cut(s) 121, 329
BspHI TCATGA 1 cut(s) 620
BspLI GGNNCC 5 cut(s) 144, 186, 334, 404, 466
BspT107I GGYRCC 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 370
BsrFI RCCGGY 1 cut(s) 423
BsrI ACTGG 2 cut(s) 16, 151
BssAI RCCGGY 1 cut(s) 423
BssECI CCNNGG 3 cut(s) 90, 327, 503
BssMI GATC 2 cut(s) 543, 576
Bst2UI CCWGG 2 cut(s) 92, 350
Bst4CI ACNGT 4 cut(s) 199, 281, 295, 469
BstBAI YACGTR 3 cut(s) 136, 310, 487
BstDEI CTNAG 2 cut(s) 573, 582
BstDSI CCRYGG 1 cut(s) 327
BstEII GGTNACC 1 cut(s) 430
BstFNI CGCG 2 cut(s) 121, 329
BstH2I RGCGCY 2 cut(s) 220, 349
BstHHI GCGC 3 cut(s) 123, 219, 348
BstKTI GATC 2 cut(s) 546, 579
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 2 cut(s) 543, 576
BstMCI CGRYCG 2 cut(s) 428, 546
BstMWI GCNNNNNNNGC 4 cut(s) 101, 345, 396, 578
BstNI CCWGG 2 cut(s) 92, 350
BstPAI GACNNNNGTC 1 cut(s) 470
BstPI GGTNACC 1 cut(s) 430
BstSCI CCNGG 5 cut(s) 90, 297, 348, 502, 503
BstUI CGCG 2 cut(s) 121, 329
BstV1I GCAGC 3 cut(s) 113, 143, 245
BsuRI GGCC 2 cut(s) 236, 593
BtgI CCRYGG 1 cut(s) 327
BtrI CACGTC 4 cut(s) 265, 376, 496, 525
BtsI GCAGTG 1 cut(s) 437
BtsIMutI CAGTG 2 cut(s) 158, 437
CciI TCATGA 1 cut(s) 620
CfoI GCGC 3 cut(s) 123, 219, 348
Cfr10I RCCGGY 1 cut(s) 423
Cfr13I GGNCC 5 cut(s) 204, 295, 333, 403, 465
Cfr42I CCGCGG 1 cut(s) 330
Cfr9I CCCGGG 1 cut(s) 503
CpoI CGGWCCG 1 cut(s) 295
Csp6I GTAC 1 cut(s) 484
CspAI ACCGGT 1 cut(s) 423
CspI CGGWCCG 1 cut(s) 295
CviAII CATG 1 cut(s) 621
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 2 cut(s) 573, 582
DpnI GATC 2 cut(s) 545, 578
DpnII GATC 2 cut(s) 543, 576
DraIII CACNNNGTG 1 cut(s) 313
DrdI GACNNNNNNGTC 1 cut(s) 202
DseDI GACNNNNNNGTC 1 cut(s) 202
EaeI YGGCCR 1 cut(s) 591
Eco147I AGGCCT 1 cut(s) 236
Eco47I GGWCC 5 cut(s) 204, 295, 333, 403, 465
Eco57I CTGAAG 1 cut(s) 370
Eco72I CACGTG 2 cut(s) 136, 310
Eco88I CYCGRG 1 cut(s) 503
Eco91I GGTNACC 1 cut(s) 430
EcoO65I GGTNACC 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 90, 348
Esp3I CGTCTC 1 cut(s) 515
FaeI CATG 1 cut(s) 624
FaiI YATR 3 cut(s) 269, 590, 622
FaqI GGGAC 2 cut(s) 416, 478
FatI CATG 1 cut(s) 620
FauI CCCGC 3 cut(s) 322, 334, 392
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 7 cut(s) 102, 105, 157, 215, 259, 371, 500
Fsp4HI GCNGC 7 cut(s) 102, 105, 157, 215, 259, 371, 500
GlaI GCGC 3 cut(s) 122, 218, 347
GluI GCNGC 7 cut(s) 102, 105, 157, 215, 259, 371, 500
GsuI CTGGAG 1 cut(s) 371
HaeII RGCGCY 2 cut(s) 220, 349
HaeIII GGCC 2 cut(s) 236, 593
HapII CCGG 3 cut(s) 298, 424, 504
HhaI GCGC 3 cut(s) 123, 219, 348
Hin1II CATG 1 cut(s) 624
Hin6I GCGC 3 cut(s) 121, 217, 346
HinP1I GCGC 3 cut(s) 121, 217, 346
HincII GTYRAC 2 cut(s) 112, 493
HindII GTYRAC 2 cut(s) 112, 493
HinfI GANTC 3 cut(s) 355, 446, 479
HpaII CCGG 3 cut(s) 298, 424, 504
HphI GGTGA 4 cut(s) 41, 293, 424, 441
Hpy166II GTNNAC 4 cut(s) 112, 307, 493, 538
Hpy188I TCNGA 1 cut(s) 576
Hpy188III TCNNGA 4 cut(s) 193, 253, 359, 621
Hpy8I GTNNAC 4 cut(s) 112, 307, 493, 538
Hpy99I CGWCG 6 cut(s) 170, 212, 368, 473, 476, 479
HpyAV CCTTC 1 cut(s) 508
HpyCH4III ACNGT 4 cut(s) 199, 281, 295, 469
HpyCH4IV ACGT 8 cut(s) 135, 264, 285, 309, 375, 486, 495, 524
HpyCH4V TGCA 4 cut(s) 172, 442, 555, 562
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 345, 396, 578
HpyF3I CTNAG 2 cut(s) 573, 582
HpySE526I ACGT 8 cut(s) 135, 264, 285, 309, 375, 486, 495, 524
Hsp92II CATG 1 cut(s) 624
HspAI GCGC 3 cut(s) 121, 217, 346
KspI CCGCGG 1 cut(s) 330
Kzo9I GATC 2 cut(s) 543, 576
LmnI GCTCC 2 cut(s) 148, 343
Lsp1109I GCAGC 3 cut(s) 113, 143, 245
MaeII ACGT 8 cut(s) 135, 264, 285, 309, 375, 486, 495, 524
MaeIII GTNAC 2 cut(s) 281, 430
MalI GATC 2 cut(s) 545, 578
MbiI CCGCTC 1 cut(s) 370
MboI GATC 2 cut(s) 543, 576
MluCI AATT 2 cut(s) 43, 80
MlyI GAGTC 2 cut(s) 440, 488
MnlI CCTC 6 cut(s) 48, 125, 175, 260, 295, 511
MslI CAYNNNNRTG 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 3 cut(s) 298, 424, 504
MspR9I CCNGG 5 cut(s) 92, 299, 350, 504, 505
MvaI CCWGG 2 cut(s) 92, 350
MvnI CGCG 2 cut(s) 121, 329
MwoI GCNNNNNNNGC 4 cut(s) 101, 345, 396, 578
NciI CCSGG 3 cut(s) 299, 504, 505
NdeII GATC 2 cut(s) 543, 576
NlaIII CATG 1 cut(s) 624
NlaIV GGNNCC 5 cut(s) 144, 186, 334, 404, 466
NmuCI GTSAC 2 cut(s) 281, 430
OliI CACNNNNGTG 1 cut(s) 545
PagI TCATGA 1 cut(s) 620
PceI AGGCCT 1 cut(s) 236
PcsI WCGNNNNNNNCGW 3 cut(s) 372, 483, 492
PfeI GAWTC 1 cut(s) 355
Pfl23II CGTACG 1 cut(s) 483
PflMI CCANNNNNTGG 1 cut(s) 139
PfoI TCCNGGA 1 cut(s) 297
PinAI ACCGGT 1 cut(s) 423
PkrI GCNGC 7 cut(s) 103, 106, 158, 216, 260, 372, 501
Ple19I CGATCG 1 cut(s) 546
PleI GAGTC 2 cut(s) 440, 487
PmaCI CACGTG 2 cut(s) 136, 310
PmlI CACGTG 2 cut(s) 136, 310
PpsI GAGTC 2 cut(s) 440, 487
Ppu21I YACGTR 3 cut(s) 136, 310, 487
PshAI GACNNNNGTC 1 cut(s) 470
Psp6I CCWGG 2 cut(s) 90, 348
PspCI CACGTG 2 cut(s) 136, 310
PspEI GGTNACC 1 cut(s) 430
PspGI CCWGG 2 cut(s) 90, 348
PspLI CGTACG 1 cut(s) 483
PspN4I GGNNCC 5 cut(s) 144, 186, 334, 404, 466
PspPI GGNCC 5 cut(s) 204, 295, 333, 403, 465
PvuI CGATCG 1 cut(s) 546
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
RseI CAYNNNNRTG 1 cut(s) 545
Rsr2I CGGWCCG 1 cut(s) 295
RsrII CGGWCCG 1 cut(s) 295
SacII CCGCGG 1 cut(s) 330
SalI GTCGAC 1 cut(s) 110
SatI GCNGC 7 cut(s) 102, 105, 157, 215, 259, 371, 500
Sau3AI GATC 2 cut(s) 543, 576
Sau96I GGNCC 5 cut(s) 204, 295, 333, 403, 465
SchI GAGTC 2 cut(s) 440, 488
ScrFI CCNGG 5 cut(s) 92, 299, 350, 504, 505
Sfr303I CCGCGG 1 cut(s) 330
SgrBI CCGCGG 1 cut(s) 330
SinI GGWCC 5 cut(s) 204, 295, 333, 403, 465
SmaI CCCGGG 1 cut(s) 505
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 2 cut(s) 43, 80
SseBI AGGCCT 1 cut(s) 236
SsiI CCGC 7 cut(s) 105, 214, 327, 329, 370, 399, 500
StuI AGGCCT 1 cut(s) 236
StyD4I CCNGG 5 cut(s) 90, 297, 348, 502, 503
TaaI ACNGT 4 cut(s) 199, 281, 295, 469
TaiI ACGT 8 cut(s) 138, 267, 288, 312, 378, 489, 498, 527
TaqI TCGA 4 cut(s) 111, 180, 222, 477
TaqII GACCGA 1 cut(s) 418
TasI AATT 2 cut(s) 43, 80
TauI GCSGC 4 cut(s) 107, 217, 373, 502
TfiI GAWTC 1 cut(s) 355
TscAI CASTG 2 cut(s) 158, 444
TseFI GTSAC 2 cut(s) 281, 430
TseI GCWGC 3 cut(s) 101, 156, 258
Tsp45I GTSAC 2 cut(s) 281, 430
TspGWI ACGGA 4 cut(s) 196, 288, 356, 471
TspMI CCCGGG 1 cut(s) 503
TspRI CASTG 2 cut(s) 158, 444
Van91I CCANNNNNTGG 1 cut(s) 139
VpaK11BI GGWCC 5 cut(s) 204, 295, 333, 403, 465
XmaI CCCGGG 1 cut(s) 503
XmiI GTMKAC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.