Rroxscaffold_4G00286000

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012881
Physical Location & Seq
Forward (+)
7174956 .. 7175612
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00286000.1

Sequence Viewer

Length: 657 bp
ATGCCTTCCTCAGTTCAACTCCAGAGAATCAGCTCCCCTTACCCAATTACAACCGCGGCCGCCGCGGCCATCAGCCACAAACAGTCCCAAGCCGTCACGCGCCAGGTCCTTCCTCTGTCCTCACGCGCCGTCAACACACCCGCCATACCGGAGTCGGTGGCCCTCCACCACGCTCACTCGGCTATGGCCTCGCCGGACCAGTGCTGCTCCGCGGTGGTGCAGACCATCGACGCGCCCGTCCCTGCCGTGTGGTCCGTGGTGCGCCGCTTCGACAACCCACAGGCCTACAAGCAGTTCCTAAAGAGCTGTCAAGTCATCGGCGGGGACCCGGCCAAGGTCGGCACCCTCCGCGAGGTGCTCGTGGTGTCGGGCCTCCCCGCGGCCTCCAGCACCGAGAGGCTGGAGATTCTTGACGACGAGGGCCACGTGCTCAGCTTCAGCGTCGTCGGTGGGGACCACCGCCTGAGGAACTACCGCTCCGTCACGACACTACACGCCTCCTCAAACGGCACCGGAACAGTCGTCGTAGAGTCGTACGTCGTCGACGTGCCGGCGGGAAACACGAAAGAAGAGACCTGCGTGTTTGTGGATACCATCGTACGCTGTAACTTGCAGTCGTTGGCTCATGTCGCCGAGAGTATGAGCAAGCCGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

218

Amino Acids

23.18

Weight (kDa)

6.44

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 71 - 212 2.8e-18 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05440
fragaria_vesca FvH4_7g25180
malus_domestica MD01G1158500.v1.1 MD07G1227100.v1.1
prunus_persica Prupe.2G256700_v2.0.a1
pyrus_communis pycom07g20570
rosa_chinensis RchiOBHm_Chr1g0371101
rosa_laevigata RLG00000026987
rosa_multiflora Rmu_co8363357.1_g000001 Rmu_sc0001018.1_g000033 Rmu_sc0003714.1_g000007
rosa_roxburghii Rroxscaffold_4G00286000
rosa_rugosa Rorug01G0361300
rosa_samantha Rh1AG371600 Rh1BG334900 Rh1CG348300 Rh1DG366200
rosa_wichuraiana Rw1G032680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 584
AccB1I GGYRCC 2 cut(s) 341, 509
AccBSI CCGCTC 1 cut(s) 477
AccI GTMKAC 1 cut(s) 543
AccII CGCG 8 cut(s) 56, 65, 100, 126, 212, 233, 351, 380
AcoI YGGCCR 3 cut(s) 57, 66, 330
AcuI CTGAAG 1 cut(s) 421
AcvI CACGTG 1 cut(s) 427
AfaI GTAC 2 cut(s) 536, 600
AfiI CCNNNNNNNGG 3 cut(s) 334, 352, 379
AgsI TTSAA 1 cut(s) 17
AjiI CACGTC 1 cut(s) 547
AjnI CCWGG 1 cut(s) 102
AloI GAACNNNNNNTCC 2 cut(s) 461, 493
AluBI AGCT 3 cut(s) 33, 306, 435
AluI AGCT 3 cut(s) 33, 306, 435
Alw21I GWGCWC 2 cut(s) 360, 432
Alw26I GTCTC 1 cut(s) 566
AoxI GGCC 9 cut(s) 57, 66, 159, 186, 282, 330, 370, 381, 421
ApeKI GCWGC 1 cut(s) 204
AspLEI GCGC 4 cut(s) 102, 128, 235, 264
AspS9I GGNCC 8 cut(s) 106, 160, 196, 252, 325, 370, 421, 454
AsuC2I CCSGG 1 cut(s) 329
AvaII GGWCC 5 cut(s) 106, 196, 252, 325, 454
AxyI CCTNAGG 1 cut(s) 464
BaeI ACNNNNGTAYC 2 cut(s) 582, 615
BanI GGYRCC 2 cut(s) 341, 509
BauI CACGAG 1 cut(s) 359
BbrPI CACGTG 1 cut(s) 427
Bbv12I GWGCWC 2 cut(s) 360, 432
BbvI GCAGC 1 cut(s) 191
BccI CCATC 3 cut(s) 77, 233, 602
BceAI ACGGC 4 cut(s) 77, 113, 230, 523
BciT130I CCWGG 1 cut(s) 104
BciVI GTATCC 1 cut(s) 583
BcnI CCSGG 1 cut(s) 329
BcoDI GTCTC 1 cut(s) 566
BfuAI ACCTGC 1 cut(s) 584
BfuI GTATCC 1 cut(s) 583
BglI GCCNNNNNGGC 1 cut(s) 65
BisI GCNGC 7 cut(s) 57, 60, 63, 66, 205, 265, 381
BlpI GCTNAGC 1 cut(s) 431
BlsI GCNGC 7 cut(s) 58, 61, 64, 67, 206, 266, 382
Bme1390I CCNGG 2 cut(s) 104, 329
Bme18I GGWCC 5 cut(s) 106, 196, 252, 325, 454
BmgBI CACGTC 1 cut(s) 547
BmgT120I GGNCC 8 cut(s) 106, 160, 196, 252, 325, 370, 421, 454
BmiI GGNNCC 5 cut(s) 326, 327, 343, 455, 511
BmrFI CCNGG 2 cut(s) 104, 329
BpmI CTGGAG 3 cut(s) 5, 370, 422
Bpu1102I GCTNAGC 1 cut(s) 431
BpuMI CCSGG 1 cut(s) 329
BsaAI YACGTR 1 cut(s) 427
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 6 cut(s) 54, 63, 210, 255, 333, 378
BsaWI WCCGGW 2 cut(s) 148, 512
BsaXI ACNNNNNCTCC 2 cut(s) 461, 491
Bsc4I CCNNNNNNNGG 3 cut(s) 334, 352, 379
Bse118I RCCGGY 1 cut(s) 550
Bse1I ACTGG 1 cut(s) 199
Bse21I CCTNAGG 1 cut(s) 464
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 6 cut(s) 54, 63, 210, 255, 333, 378
BseLI CCNNNNNNNGG 3 cut(s) 334, 352, 379
BseMII CTCAG 3 cut(s) 24, 445, 455
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 490
BseX3I CGGCCG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 191
BsgI GTGCAG 1 cut(s) 239
Bsh1236I CGCG 8 cut(s) 56, 65, 100, 126, 212, 233, 351, 380
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 9 cut(s) 59, 68, 161, 188, 284, 332, 372, 383, 423
BshNI GGYRCC 2 cut(s) 341, 509
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 2 cut(s) 360, 432
BsiSI CCGG 6 cut(s) 149, 194, 329, 513, 551, 650
BsiWI CGTACG 2 cut(s) 534, 598
BslFI GGGAC 4 cut(s) 70, 224, 338, 467
BslI CCNNNNNNNGG 3 cut(s) 334, 352, 379
BsmAI GTCTC 1 cut(s) 566
BsmFI GGGAC 4 cut(s) 70, 224, 338, 467
BsnI GGCC 9 cut(s) 59, 68, 161, 188, 284, 332, 372, 383, 423
Bso31I GGTCTC 1 cut(s) 566
Bsp1286I GDGCHC 2 cut(s) 360, 432
Bsp1720I GCTNAGC 1 cut(s) 431
BspANI GGCC 9 cut(s) 59, 68, 161, 188, 284, 332, 372, 383, 423
BspCNI CTCAG 3 cut(s) 23, 444, 456
BspFNI CGCG 8 cut(s) 56, 65, 100, 126, 212, 233, 351, 380
BspLI GGNNCC 5 cut(s) 326, 327, 343, 455, 511
BspMI ACCTGC 1 cut(s) 584
BspT107I GGYRCC 2 cut(s) 341, 509
BspTNI GGTCTC 1 cut(s) 566
BsrBI CCGCTC 1 cut(s) 477
BsrFI RCCGGY 1 cut(s) 550
BsrI ACTGG 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 550
BssECI CCNNGG 6 cut(s) 54, 63, 210, 255, 333, 378
BssSI CACGAG 1 cut(s) 359
BssT1I CCWWGG 1 cut(s) 333
Bst2BI CACGAG 1 cut(s) 359
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 84, 520
Bst6I CTCTTC 1 cut(s) 564
BstBAI YACGTR 1 cut(s) 427
BstC8I GCNNGC 2 cut(s) 552, 647
BstDEI CTNAG 3 cut(s) 10, 431, 464
BstDSI CCRYGG 5 cut(s) 54, 63, 210, 255, 378
BstENI CCTNNNNNAGG 1 cut(s) 350
BstFNI CGCG 8 cut(s) 56, 65, 100, 126, 212, 233, 351, 380
BstHHI GCGC 4 cut(s) 102, 128, 235, 264
BstMAI GTCTC 1 cut(s) 566
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 5 cut(s) 62, 65, 179, 348, 629
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 2 cut(s) 102, 327
BstUI CGCG 8 cut(s) 56, 65, 100, 126, 212, 233, 351, 380
BstV1I GCAGC 1 cut(s) 191
BstZI CGGCCG 1 cut(s) 57
Bsu36I CCTNAGG 1 cut(s) 464
BsuI GTATCC 1 cut(s) 583
BsuRI GGCC 9 cut(s) 59, 68, 161, 188, 284, 332, 372, 383, 423
BtgI CCRYGG 5 cut(s) 54, 63, 210, 255, 378
BtrI CACGTC 1 cut(s) 547
BtsIMutI CAGTG 1 cut(s) 206
BveI ACCTGC 1 cut(s) 584
Cac8I GCNNGC 2 cut(s) 552, 647
CciNI GCGGCCGC 1 cut(s) 57
CfoI GCGC 4 cut(s) 102, 128, 235, 264
Cfr10I RCCGGY 1 cut(s) 550
Cfr13I GGNCC 8 cut(s) 106, 160, 196, 252, 325, 370, 421, 454
Cfr42I CCGCGG 4 cut(s) 57, 66, 213, 381
CseI GACGC 2 cut(s) 239, 430
Csp6I GTAC 2 cut(s) 535, 599
CviAII CATG 1 cut(s) 626
CviQI GTAC 2 cut(s) 535, 599
DdeI CTNAG 3 cut(s) 10, 431, 464
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 3 cut(s) 57, 66, 330
EagI CGGCCG 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
EclXI CGGCCG 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 333
Eco147I AGGCCT 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 566
Eco47I GGWCC 5 cut(s) 106, 196, 252, 325, 454
Eco52I CGGCCG 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 421
Eco72I CACGTG 1 cut(s) 427
Eco81I CCTNAGG 1 cut(s) 464
EcoNI CCTNNNNNAGG 1 cut(s) 350
EcoO109I RGGNCCY 2 cut(s) 106, 325
EcoRII CCWGG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 1 cut(s) 629
FaiI YATR 4 cut(s) 146, 185, 627, 641
FaqI GGGAC 4 cut(s) 70, 224, 338, 467
FatI CATG 1 cut(s) 625
FauI CCCGC 4 cut(s) 148, 314, 385, 547
FblI GTMKAC 1 cut(s) 543
Fnu4HI GCNGC 7 cut(s) 57, 60, 63, 66, 205, 265, 381
Fsp4HI GCNGC 7 cut(s) 57, 60, 63, 66, 205, 265, 381
GlaI GCGC 4 cut(s) 101, 127, 234, 263
GluI GCNGC 7 cut(s) 57, 60, 63, 66, 205, 265, 381
GsuI CTGGAG 3 cut(s) 5, 370, 422
HaeIII GGCC 9 cut(s) 59, 68, 161, 188, 284, 332, 372, 383, 423
HapII CCGG 6 cut(s) 149, 194, 329, 513, 551, 650
HgaI GACGC 2 cut(s) 239, 430
HhaI GCGC 4 cut(s) 102, 128, 235, 264
Hin1II CATG 1 cut(s) 629
Hin6I GCGC 4 cut(s) 100, 126, 233, 262
HinP1I GCGC 4 cut(s) 100, 126, 233, 262
HincII GTYRAC 2 cut(s) 133, 544
HindII GTYRAC 2 cut(s) 133, 544
HinfI GANTC 4 cut(s) 27, 152, 406, 530
HpaII CCGG 6 cut(s) 149, 194, 329, 513, 551, 650
Hpy166II GTNNAC 2 cut(s) 133, 544
Hpy188III TCNNGA 3 cut(s) 22, 410, 484
Hpy8I GTNNAC 2 cut(s) 133, 544
Hpy99I CGWCG 8 cut(s) 233, 419, 446, 449, 527, 542, 545, 548
HpyAV CCTTC 2 cut(s) 15, 119
HpyCH4III ACNGT 2 cut(s) 84, 520
HpyCH4IV ACGT 3 cut(s) 426, 537, 546
HpyCH4V TGCA 2 cut(s) 220, 613
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 65, 179, 348, 629
HpyF3I CTNAG 3 cut(s) 10, 431, 464
HpySE526I ACGT 3 cut(s) 426, 537, 546
Hsp92II CATG 1 cut(s) 629
HspAI GCGC 4 cut(s) 100, 126, 233, 262
KflI GGGWCCC 1 cut(s) 325
KroI GCCGGC 1 cut(s) 550
KroNI GCCGGC 1 cut(s) 552
KspI CCGCGG 4 cut(s) 57, 66, 213, 381
LmnI GCTCC 3 cut(s) 38, 212, 482
Lsp1109I GCAGC 1 cut(s) 191
MaeII ACGT 3 cut(s) 426, 537, 546
MaeIII GTNAC 3 cut(s) 94, 481, 605
MbiI CCGCTC 1 cut(s) 477
MboII GAAGA 1 cut(s) 581
MhlI GDGCHC 2 cut(s) 360, 432
MluCI AATT 1 cut(s) 45
MlyI GAGTC 2 cut(s) 161, 539
MroNI GCCGGC 1 cut(s) 550
MspA1I CMGCKG 4 cut(s) 56, 65, 212, 380
MspI CCGG 6 cut(s) 149, 194, 329, 513, 551, 650
MspR9I CCNGG 2 cut(s) 104, 329
MvaI CCWGG 1 cut(s) 104
MvnI CGCG 8 cut(s) 56, 65, 100, 126, 212, 233, 351, 380
MwoI GCNNNNNNNGC 5 cut(s) 62, 65, 179, 348, 629
NaeI GCCGGC 1 cut(s) 552
NciI CCSGG 1 cut(s) 329
NgoMIV GCCGGC 1 cut(s) 550
NlaIII CATG 1 cut(s) 629
NlaIV GGNNCC 5 cut(s) 326, 327, 343, 455, 511
NmeAIII GCCGAG 1 cut(s) 158
NmuCI GTSAC 2 cut(s) 94, 481
NotI GCGGCCGC 1 cut(s) 57
PceI AGGCCT 1 cut(s) 284
PcsI WCGNNNNNNNCGW 3 cut(s) 234, 423, 543
PdiI GCCGGC 1 cut(s) 552
PfeI GAWTC 2 cut(s) 27, 406
Pfl23II CGTACG 2 cut(s) 534, 598
PkrI GCNGC 7 cut(s) 58, 61, 64, 67, 206, 266, 382
PleI GAGTC 2 cut(s) 160, 538
PmaCI CACGTG 1 cut(s) 427
PmlI CACGTG 1 cut(s) 427
PpsI GAGTC 2 cut(s) 160, 538
Ppu21I YACGTR 1 cut(s) 427
PpuMI RGGWCCY 2 cut(s) 106, 325
Psp5II RGGWCCY 2 cut(s) 106, 325
Psp6I CCWGG 1 cut(s) 102
PspCI CACGTG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 102
PspLI CGTACG 2 cut(s) 534, 598
PspN4I GGNNCC 5 cut(s) 326, 327, 343, 455, 511
PspPI GGNCC 8 cut(s) 106, 160, 196, 252, 325, 370, 421, 454
PspPPI RGGWCCY 2 cut(s) 106, 325
RsaI GTAC 2 cut(s) 536, 600
RsaNI GTAC 2 cut(s) 535, 599
SacII CCGCGG 4 cut(s) 57, 66, 213, 381
SalI GTCGAC 1 cut(s) 542
SatI GCNGC 7 cut(s) 57, 60, 63, 66, 205, 265, 381
Sau96I GGNCC 8 cut(s) 106, 160, 196, 252, 325, 370, 421, 454
SchI GAGTC 2 cut(s) 161, 539
ScrFI CCNGG 2 cut(s) 104, 329
SduI GDGCHC 2 cut(s) 360, 432
SfiI GGCCNNNNNGGCC 1 cut(s) 65
Sfr303I CCGCGG 4 cut(s) 57, 66, 213, 381
SgrBI CCGCGG 4 cut(s) 57, 66, 213, 381
SgrDI CGTCGACG 1 cut(s) 542
SinI GGWCC 5 cut(s) 106, 196, 252, 325, 454
Sse9I AATT 1 cut(s) 45
SseBI AGGCCT 1 cut(s) 284
StuI AGGCCT 1 cut(s) 284
StyD4I CCNGG 2 cut(s) 102, 327
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 84, 520
TaiI ACGT 3 cut(s) 429, 540, 549
TaqI TCGA 3 cut(s) 228, 270, 543
TasI AATT 1 cut(s) 45
TauI GCSGC 6 cut(s) 59, 62, 65, 68, 267, 383
TfiI GAWTC 2 cut(s) 27, 406
TscAI CASTG 1 cut(s) 206
TseFI GTSAC 2 cut(s) 94, 481
TseI GCWGC 1 cut(s) 204
Tsp45I GTSAC 2 cut(s) 94, 481
TspGWI ACGGA 2 cut(s) 244, 469
TspRI CASTG 1 cut(s) 206
VpaK11BI GGWCC 5 cut(s) 106, 196, 252, 325, 454
XagI CCTNNNNNAGG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.