Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006020

Physical Location & Seq

Genomic Coordinates Forward (+)

1715780 .. 1716549

Gene Structure 770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCAAGCCTGTGGCGAGCAGTAATCGGCGGTCAGAACAACAATTCCGAAGACTACGGAGGCGTAGAGTTCTGGTCAAACCCAGAACGAACCGGCTGGCTCACGAAACAAGGAGAGTACATCAAGACTTGGCGACGCCGATGGTTCGTGCTCAAACAAGGGAAACTCTTCTGGTTCAAAGACTCCGACGTCACGCGTGTGTCACGCCCTCGCGGTGTCGTCCCCGTAGAATCGTGCTTAACCGCTAAAGGAGCAGAGGATGTACTCAACAAGCAAAACGCGTTCGAGCTATCGACGAGAAATGAGACTATGTACTTCATTGCTGATTCGGAGAAGGAGAAAGAAGATTGGATCAATTCCATTGGACGTTCCATCGTGCAAAACTCCAGATCCGTTACCGATTCTGAGATCGTTGATTACGATAACAAACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0032266 GO:0035091 GO:0043167 GO:0043168 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

144

Amino Acids

16.73

Weight (kDa)

6.61

Isoelectric Point (pI)

59.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_20	PF20399	28 - 99	7.8e-06	PH domain
PH	PF00169	29 - 125	3.2e-20	PH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05710
malus_domestica	MD01G1149900.v1.1 MD07G1216300.v1.1
prunus_persica	Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.3G164400_v2.0.a1
pyrus_communis	pycom01g16790 pycom07g19870
rosa_chinensis	RchiOBHm_Chr1g0369831
rosa_laevigata	RLG00000027085 RLG00000027102
rosa_multiflora	Rmu_sc0008140.1_g000007
rosa_roxburghii	Rroxscaffold_4G00287060
rosa_rugosa	Rorug01G0352600
rosa_samantha	Rh1AG361100 Rh1BG324800 Rh1CG338000 Rh1DG355200
rosa_wichuraiana	Rw0G015490 Rw1G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AatII	GACGTC	1 cut(s)	192
AccII	CGCG	3 cut(s)	196, 213, 281
AciI	CCGC	3 cut(s)	30, 213, 243
AclWI	GGATC	2 cut(s)	359, 384
AcyI	GRCGYC	2 cut(s)	136, 189
AfaI	GTAC	3 cut(s)	119, 264, 314
AflIII	ACRYGT	2 cut(s)	194, 279
AgsI	TTSAA	1 cut(s)	178
AleI	CACNNNNGTG	1 cut(s)	197
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	2 cut(s)	359, 384
Asp700I	GAANNNNTTC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	153
BccI	CCATC	2 cut(s)	135, 380
BcoDI	GTCTC	1 cut(s)	299
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	370
BsaHI	GRCGYC	2 cut(s)	136, 189
Bse118I	RCCGGY	1 cut(s)	92
Bse3DI	GCAATG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	396
Bsh1236I	CGCG	3 cut(s)	196, 213, 281
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	3 cut(s)	351, 389, 408
BspACI	CCGC	3 cut(s)	30, 213, 243
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	3 cut(s)	196, 213, 281
BspPI	GGATC	2 cut(s)	359, 384
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssMI	GATC	3 cut(s)	351, 389, 408
BssNI	GRCGYC	2 cut(s)	136, 189
Bst6I	CTCTTC	1 cut(s)	173
BstACI	GRCGYC	2 cut(s)	136, 189
BstC8I	GCNNGC	3 cut(s)	7, 18, 98
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	3 cut(s)	196, 213, 281
BstKTI	GATC	3 cut(s)	354, 392, 411
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	3 cut(s)	351, 389, 408
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstUI	CGCG	3 cut(s)	196, 213, 281
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BtsCI	GGATG	1 cut(s)	265
Cac8I	GCNNGC	3 cut(s)	7, 18, 98
Cfr10I	RCCGGY	1 cut(s)	92
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	3 cut(s)	118, 263, 313
CviJI	RGCY	4 cut(s)	9, 96, 100, 289
CviKI_1	RGCY	4 cut(s)	9, 96, 100, 289
CviQI	GTAC	3 cut(s)	118, 263, 313
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	3 cut(s)	353, 391, 410
DpnII	GATC	3 cut(s)	351, 389, 408
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
FaiI	YATR	1 cut(s)	311
FaqI	GGGAC	1 cut(s)	206
FokI	GGATG	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	370
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	144
Hin1I	GRCGYC	2 cut(s)	136, 189
HinfI	GANTC	4 cut(s)	182, 230, 326, 401
HpaII	CCGG	1 cut(s)	93
Hpy188I	TCNGA	5 cut(s)	36, 49, 187, 331, 406
Hpy188III	TCNNGA	3 cut(s)	103, 124, 387
Hpy99I	CGWCG	3 cut(s)	138, 191, 298
HpyAV	CCTTC	1 cut(s)	328
HpyCH4IV	ACGT	2 cut(s)	189, 367
HpyCH4V	TGCA	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	2 cut(s)	189, 367
Hsp92I	GRCGYC	2 cut(s)	136, 189
Kzo9I	GATC	3 cut(s)	351, 389, 408
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	7 cut(s)	23, 58, 82, 96, 106, 157, 400
MaeII	ACGT	2 cut(s)	189, 367
MaeIII	GTNAC	3 cut(s)	190, 201, 394
MalI	GATC	3 cut(s)	353, 391, 410
MboI	GATC	3 cut(s)	351, 389, 408
MboII	GAAGA	3 cut(s)	62, 160, 356
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	2 cut(s)	43, 355
MluI	ACGCGT	2 cut(s)	194, 279
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	3 cut(s)	53, 219, 250
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	197
MspI	CCGG	1 cut(s)	93
MvnI	CGCG	3 cut(s)	196, 213, 281
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeII	GATC	3 cut(s)	351, 389, 408
NmuCI	GTSAC	2 cut(s)	190, 201
OliI	CACNNNNGTG	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	3 cut(s)	230, 326, 401
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	3 cut(s)	119, 264, 314
RsaNI	GTAC	3 cut(s)	118, 263, 313
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	239
Sau3AI	GATC	3 cut(s)	351, 389, 408
SchI	GAGTC	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	3 cut(s)	192, 291, 370
SmiMI	CAYNNNNRTG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	43, 355
SsiI	CCGC	3 cut(s)	30, 213, 243
TaiI	ACGT	2 cut(s)	192, 370
TaqI	TCGA	2 cut(s)	285, 293
TasI	AATT	2 cut(s)	43, 355
TatI	WGTACW	3 cut(s)	117, 262, 312
TfiI	GAWTC	3 cut(s)	230, 326, 401
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TseFI	GTSAC	2 cut(s)	190, 201
Tsp45I	GTSAC	2 cut(s)	190, 201
TspDTI	ATGAA	1 cut(s)	307
TspGWI	ACGGA	2 cut(s)	72, 382
XmnI	GAANNNNTTC	1 cut(s)	167
ZraI	GACGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.