Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006020

Physical Location & Seq

Genomic Coordinates Forward (+)

18347713 .. 18348378

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G164400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGAGCCTATGGCGAGCCGCGACGGGCCAGACGGAGAAGCCCAACGACTACGACGGAGTGGAGTTCTGGTTAAACCCTGAACGCACTGGTTGGTTGACCAAGCGAGGCGAGTACATAAAGACGTGGCGTCGCCGGTGGTTCGTGCTCAAGCAAGGCAAGCTCTTCTGGTTCAAGGACTCAACCGTCACCCGCGGCTCCAGCCCACGTGGCGTGATCCCAGTGGCTTCCTGCCTTACAGTCAAGGGAGCCGAGGACGTCCTCAACAAGCAGTACGCGTTCGAGCTGTCCATGCGCTCCGACACCATGTACTTCATCGCCGACTCGGAGAAGGAGAAGGAGGACTGGATCAACTCGATCGGACGATCCATAGTGCAGCACTCGAGGTCCGTCACAGACTCCGAGGTCGTCGATTACGATAGCAACAAGTGTTGGGAAAGGAGGCCAGCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0032266 GO:0035091 GO:0043167 GO:0043168 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

152

Amino Acids

17.7

Weight (kDa)

8.88

Isoelectric Point (pI)

64.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05710
malus_domestica	MD01G1149900.v1.1 MD07G1216300.v1.1
prunus_persica	Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.3G164400_v2.0.a1
pyrus_communis	pycom01g16790 pycom07g19870
rosa_chinensis	RchiOBHm_Chr1g0369831
rosa_laevigata	RLG00000027085 RLG00000027102
rosa_multiflora	Rmu_sc0008140.1_g000007
rosa_roxburghii	Rroxscaffold_4G00287060
rosa_rugosa	Rorug01G0352600
rosa_samantha	Rh1AG361100 Rh1BG324800 Rh1CG338000 Rh1DG355200
rosa_wichuraiana	Rw0G015490 Rw1G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	185, 404
AatII	GACGTC	1 cut(s)	261
AccII	CGCG	3 cut(s)	23, 195, 278
AciI	CCGC	3 cut(s)	21, 193, 195
AclWI	GGATC	3 cut(s)	211, 356, 360
AcvI	CACGTG	1 cut(s)	209
AcyI	GRCGYC	2 cut(s)	130, 258
AfaI	GTAC	3 cut(s)	116, 275, 311
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	175
AhdI	GACNNNNNGTC	1 cut(s)	129
AjiI	CACGTC	1 cut(s)	126
AluBI	AGCT	3 cut(s)	163, 286, 449
AluI	AGCT	3 cut(s)	163, 286, 449
Alw21I	GWGCWC	1 cut(s)	150
AlwI	GGATC	3 cut(s)	211, 356, 360
Ama87I	CYCGRG	1 cut(s)	382
AoxI	GGCC	2 cut(s)	28, 443
ApeKI	GCWGC	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	2 cut(s)	28, 387
AsuHPI	GGTGA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	387
BbrPI	CACGTG	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	388
BglI	GCCNNNNNGGC	1 cut(s)	210
BisI	GCNGC	3 cut(s)	21, 196, 377
BlsI	GCNGC	3 cut(s)	22, 197, 378
Bme18I	GGWCC	1 cut(s)	387
BmeRI	GACNNNNNGTC	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	382
BmgBI	CACGTC	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	28, 387
BmiI	GGNNCC	2 cut(s)	199, 250
BmrI	ACTGGG	1 cut(s)	215
BmuI	ACTGGG	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	134
BsaAI	YACGTR	1 cut(s)	209
BsaHI	GRCGYC	2 cut(s)	130, 258
BsaJI	CCNNGG	3 cut(s)	193, 252, 402
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse118I	RCCGGY	1 cut(s)	135
Bse1I	ACTGG	3 cut(s)	94, 221, 350
BseDI	CCNNGG	3 cut(s)	193, 252, 402
BseNI	ACTGG	3 cut(s)	94, 221, 350
BseXI	GCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	395
Bsh1236I	CGCG	3 cut(s)	23, 195, 278
Bsh1285I	CGRYCG	1 cut(s)	360
BshFI	GGCC	2 cut(s)	30, 445
BsiEI	CGRYCG	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	382
BsiSI	CCGG	1 cut(s)	136
BsnI	GGCC	2 cut(s)	30, 445
BsoBI	CYCGRG	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	4 cut(s)	216, 348, 357, 365
BspACI	CCGC	3 cut(s)	21, 193, 195
BspANI	GGCC	2 cut(s)	30, 445
BspFNI	CGCG	3 cut(s)	23, 195, 278
BspLI	GGNNCC	2 cut(s)	199, 250
BspPI	GGATC	3 cut(s)	211, 356, 360
BspQI	GCTCTTC	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	135
BsrI	ACTGG	3 cut(s)	94, 221, 350
BssAI	RCCGGY	1 cut(s)	135
BssECI	CCNNGG	3 cut(s)	193, 252, 402
BssMI	GATC	4 cut(s)	216, 348, 357, 365
BssNI	GRCGYC	2 cut(s)	130, 258
Bst4CI	ACNGT	2 cut(s)	187, 241
Bst6I	CTCTTC	1 cut(s)	170
BstACI	GRCGYC	2 cut(s)	130, 258
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	4 cut(s)	7, 18, 161, 447
BstDSI	CCRYGG	1 cut(s)	193
BstFNI	CGCG	3 cut(s)	23, 195, 278
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	4 cut(s)	219, 351, 360, 368
BstMBI	GATC	4 cut(s)	216, 348, 357, 365
BstMCI	CGRYCG	1 cut(s)	360
BstMWI	GCNNNNNNNGC	4 cut(s)	160, 201, 210, 292
BstUI	CGCG	3 cut(s)	23, 195, 278
BstV1I	GCAGC	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	30, 445
BtgI	CCRYGG	1 cut(s)	193
BtgZI	GCGATG	1 cut(s)	301
BtrI	CACGTC	1 cut(s)	126
BtsIMutI	CAGTG	2 cut(s)	87, 228
Cac8I	GCNNGC	4 cut(s)	7, 18, 161, 447
CfoI	GCGC	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	28, 387
Cfr42I	CCGCGG	1 cut(s)	196
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	3 cut(s)	115, 274, 310
CviAII	CATG	2 cut(s)	292, 307
CviQI	GTAC	3 cut(s)	115, 274, 310
DpnI	GATC	4 cut(s)	218, 350, 359, 367
DpnII	GATC	4 cut(s)	216, 348, 357, 365
DrdI	GACNNNNNNGTC	2 cut(s)	185, 404
DriI	GACNNNNNGTC	1 cut(s)	129
DseDI	GACNNNNNNGTC	2 cut(s)	185, 404
Eam1104I	CTCTTC	1 cut(s)	170
Eam1105I	GACNNNNNGTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	387
Eco72I	CACGTG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	382
FaeI	CATG	2 cut(s)	295, 310
FaiI	YATR	5 cut(s)	13, 119, 293, 308, 371
FatI	CATG	2 cut(s)	291, 306
FauI	CCCGC	1 cut(s)	200
Fnu4HI	GCNGC	3 cut(s)	21, 196, 377
Fsp4HI	GCNGC	3 cut(s)	21, 196, 377
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	3 cut(s)	21, 196, 377
GsuI	CTGGAG	1 cut(s)	184
HaeIII	GGCC	2 cut(s)	30, 445
HapII	CCGG	1 cut(s)	136
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	297
Hin1I	GRCGYC	2 cut(s)	130, 258
Hin1II	CATG	2 cut(s)	295, 310
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	3 cut(s)	179, 323, 398
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	4 cut(s)	301, 328, 362, 403
Hpy8I	GTNNAC	1 cut(s)	99
Hpy99I	CGWCG	4 cut(s)	28, 59, 135, 413
HpyAV	CCTTC	2 cut(s)	325, 331
HpyCH4III	ACNGT	2 cut(s)	187, 241
HpyCH4IV	ACGT	3 cut(s)	125, 208, 258
HpyCH4V	TGCA	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	4 cut(s)	160, 201, 210, 292
HpySE526I	ACGT	3 cut(s)	125, 208, 258
Hsp92I	GRCGYC	2 cut(s)	130, 258
Hsp92II	CATG	2 cut(s)	295, 310
HspAI	GCGC	1 cut(s)	295
KspI	CCGCGG	1 cut(s)	196
Kzo9I	GATC	4 cut(s)	216, 348, 357, 365
LguI	GCTCTTC	1 cut(s)	170
LmnI	GCTCC	3 cut(s)	203, 248, 302
Lsp1109I	GCAGC	1 cut(s)	388
MaeII	ACGT	3 cut(s)	125, 208, 258
MaeIII	GTNAC	2 cut(s)	187, 391
MalI	GATC	4 cut(s)	218, 350, 359, 367
MboI	GATC	4 cut(s)	216, 348, 357, 365
MboII	GAAGA	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	150
MluI	ACGCGT	1 cut(s)	276
MlyI	GAGTC	3 cut(s)	173, 317, 392
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	7 cut(s)	101, 247, 272, 334, 378, 397, 435
MseI	TTAA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	1 cut(s)	136
MvnI	CGCG	3 cut(s)	23, 195, 278
MwoI	GCNNNNNNNGC	4 cut(s)	160, 201, 210, 292
NdeII	GATC	4 cut(s)	216, 348, 357, 365
NlaIII	CATG	2 cut(s)	295, 310
NlaIV	GGNNCC	2 cut(s)	199, 250
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	187, 391
PaeR7I	CTCGAG	1 cut(s)	382
PciSI	GCTCTTC	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	414
PkrI	GCNGC	3 cut(s)	22, 197, 378
Ple19I	CGATCG	1 cut(s)	360
PleI	GAGTC	3 cut(s)	173, 317, 392
PmaCI	CACGTG	1 cut(s)	209
PmlI	CACGTG	1 cut(s)	209
PpsI	GAGTC	3 cut(s)	173, 317, 392
Ppu21I	YACGTR	1 cut(s)	209
PspCI	CACGTG	1 cut(s)	209
PspN4I	GGNNCC	2 cut(s)	199, 250
PspPI	GGNCC	2 cut(s)	28, 387
PspXI	VCTCGAGB	1 cut(s)	382
PvuI	CGATCG	1 cut(s)	360
RsaI	GTAC	3 cut(s)	116, 275, 311
RsaNI	GTAC	3 cut(s)	115, 274, 310
SacII	CCGCGG	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	3 cut(s)	21, 196, 377
Sau3AI	GATC	4 cut(s)	216, 348, 357, 365
Sau96I	GGNCC	2 cut(s)	28, 387
SchI	GAGTC	3 cut(s)	173, 317, 392
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	8 cut(s)	128, 165, 211, 261, 288, 389, 408, 451
Sfr274I	CTCGAG	1 cut(s)	382
Sfr303I	CCGCGG	1 cut(s)	196
SgrAI	CRCCGGYG	1 cut(s)	135
SgrBI	CCGCGG	1 cut(s)	196
SinI	GGWCC	1 cut(s)	387
SlaI	CTCGAG	1 cut(s)	382
SmlI	CTYRAG	2 cut(s)	149, 382
SmoI	CTYRAG	2 cut(s)	149, 382
SsiI	CCGC	3 cut(s)	21, 193, 195
TaaI	ACNGT	2 cut(s)	187, 241
TaiI	ACGT	3 cut(s)	128, 211, 261
TaqI	TCGA	4 cut(s)	282, 356, 383, 411
TatI	WGTACW	2 cut(s)	114, 309
TauI	GCSGC	2 cut(s)	23, 198
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	2 cut(s)	94, 228
TseFI	GTSAC	2 cut(s)	187, 391
TseI	GCWGC	1 cut(s)	376
Tsp45I	GTSAC	2 cut(s)	187, 391
TspDTI	ATGAA	1 cut(s)	304
TspGWI	ACGGA	3 cut(s)	50, 72, 379
TspRI	CASTG	2 cut(s)	94, 228
VpaK11BI	GGWCC	1 cut(s)	387
XhoI	CTCGAG	1 cut(s)	382
ZraI	GACGTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.