RLG00000027102

Pleckstrin homology domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006020
Physical Location & Seq
Forward (+)
8444406 .. 8444843
438 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027102

Sequence Viewer

Length: 438 bp
ATGGCGCGTCTGTGGCGGGCCGCGACGGGCCTGACCGATAAGGCCGTCGACTACGACGGCGTGGAGTTCTGGTCAAACCCGGAGCGCACGGGGTGGTTGACCAAGCAAGGCGAGTACATAAAGACGTGGCGTCGCCGGTGGTTCGTTCTGAAGCAAGGGAAGCTGTTCTGGTTCAAGGACTCCGCCGTCACGCGCGCGTCGAGGACACGTGGCGTGATCCCGGTGGCCACGTGCCTGACGGTGAAGGGCGCGGAGGACGTGCTGAACAAGCAGTACGCTTTCGAGCTCTCCACGCGCTCCGAGACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGACTGGATCAACTCGATCGGACGGTCCATCGTGCAGCACTCCAGGTCCGTCACCGACTCCGAGGTCGTCGATTACGATAGCAACAACAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0032266 GO:0035091 GO:0043167 GO:0043168 GO:1901981
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PH

Protein Analysis

146

Amino Acids

16.84

Weight (kDa)

9.01

Isoelectric Point (pI)

54.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH PF00169 28 - 124 2.1e-20 PH domain
PH_11 PF15413 35 - 121 5.7e-06 Pleckstrin homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 185, 404
AccI GTMKAC 1 cut(s) 48
AccII CGCG 7 cut(s) 7, 23, 193, 195, 197, 251, 295
AciI CCGC 4 cut(s) 16, 21, 183, 251
AclWI GGATC 2 cut(s) 211, 356
AcoI YGGCCR 1 cut(s) 225
AcuI CTGAAG 1 cut(s) 170
AcvI CACGTG 2 cut(s) 209, 231
AcyI GRCGYC 1 cut(s) 130
AdeI CACNNNGTG 1 cut(s) 93
AfaI GTAC 3 cut(s) 116, 275, 311
AflIII ACRYGT 1 cut(s) 206
AgsI TTSAA 1 cut(s) 175
AhdI GACNNNNNGTC 1 cut(s) 129
AjiI CACGTC 2 cut(s) 126, 259
AjnI CCWGG 1 cut(s) 383
AluBI AGCT 2 cut(s) 163, 286
AluI AGCT 2 cut(s) 163, 286
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 2 cut(s) 211, 356
AoxI GGCC 4 cut(s) 18, 28, 42, 225
ApeKI GCWGC 1 cut(s) 376
Asp700I GAANNNNTTC 1 cut(s) 164
AspLEI GCGC 6 cut(s) 7, 87, 195, 197, 251, 297
AspS9I GGNCC 4 cut(s) 18, 28, 366, 387
AsuC2I CCSGG 2 cut(s) 80, 221
AsuHPI GGTGA 2 cut(s) 253, 385
AvaII GGWCC 2 cut(s) 366, 387
BalI TGGCCA 1 cut(s) 227
BanII GRGCYC 1 cut(s) 288
BbrPI CACGTG 2 cut(s) 209, 231
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 388
BccI CCATC 1 cut(s) 377
BceAI ACGGC 3 cut(s) 29, 73, 170
BciT130I CCWGG 1 cut(s) 385
BcnI CCSGG 2 cut(s) 80, 221
BcoDI GTCTC 1 cut(s) 296
BisI GCNGC 2 cut(s) 21, 377
BlsI GCNGC 2 cut(s) 22, 378
Bme1390I CCNGG 3 cut(s) 80, 221, 385
Bme18I GGWCC 2 cut(s) 366, 387
BmeRI GACNNNNNGTC 1 cut(s) 129
BmgBI CACGTC 2 cut(s) 126, 259
BmgT120I GGNCC 4 cut(s) 18, 28, 366, 387
BmrFI CCNGG 3 cut(s) 80, 221, 385
BpmI CTGGAG 1 cut(s) 367
BpuMI CCSGG 2 cut(s) 80, 221
BsaAI YACGTR 2 cut(s) 209, 231
BsaHI GRCGYC 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 402
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bse118I RCCGGY 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 350
BseBI CCWGG 1 cut(s) 385
BseDI CCNNGG 1 cut(s) 402
BseNI ACTGG 1 cut(s) 350
BsePI GCGCGC 1 cut(s) 193
BseXI GCAGC 1 cut(s) 388
BsgI GTGCAG 1 cut(s) 395
Bsh1236I CGCG 7 cut(s) 7, 23, 193, 195, 197, 251, 295
Bsh1285I CGRYCG 1 cut(s) 360
BshFI GGCC 4 cut(s) 20, 30, 44, 227
BsiEI CGRYCG 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 3 cut(s) 80, 136, 221
BsmAI GTCTC 1 cut(s) 296
BsnI GGCC 4 cut(s) 20, 30, 44, 227
Bso31I GGTCTC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 3 cut(s) 216, 348, 357
BspACI CCGC 4 cut(s) 16, 21, 183, 251
BspANI GGCC 4 cut(s) 20, 30, 44, 227
BspFNI CGCG 7 cut(s) 7, 23, 193, 195, 197, 251, 295
BspPI GGATC 2 cut(s) 211, 356
BspTNI GGTCTC 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 135
BsrI ACTGG 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 402
BssHII GCGCGC 1 cut(s) 193
BssMI GATC 3 cut(s) 216, 348, 357
BssNI GRCGYC 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 2 cut(s) 241, 366
BstACI GRCGYC 1 cut(s) 130
BstBAI YACGTR 2 cut(s) 209, 231
BstC8I GCNNGC 2 cut(s) 18, 195
BstFNI CGCG 7 cut(s) 7, 23, 193, 195, 197, 251, 295
BstHHI GCGC 6 cut(s) 7, 87, 195, 197, 251, 297
BstKTI GATC 3 cut(s) 219, 351, 360
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 3 cut(s) 216, 348, 357
BstMCI CGRYCG 1 cut(s) 360
BstMWI GCNNNNNNNGC 4 cut(s) 13, 160, 268, 292
BstNI CCWGG 1 cut(s) 385
BstSCI CCNGG 3 cut(s) 78, 219, 383
BstUI CGCG 7 cut(s) 7, 23, 193, 195, 197, 251, 295
BstV1I GCAGC 1 cut(s) 388
BsuRI GGCC 4 cut(s) 20, 30, 44, 227
BtgZI GCGATG 1 cut(s) 301
BtrI CACGTC 2 cut(s) 126, 259
Cac8I GCNNGC 2 cut(s) 18, 195
CfoI GCGC 6 cut(s) 7, 87, 195, 197, 251, 297
Cfr10I RCCGGY 1 cut(s) 135
Cfr13I GGNCC 4 cut(s) 18, 28, 366, 387
CseI GACGC 2 cut(s) 119, 186
Csp6I GTAC 3 cut(s) 115, 274, 310
CviAII CATG 1 cut(s) 307
CviJI RGCY 6 cut(s) 20, 30, 44, 163, 227, 286
CviKI_1 RGCY 6 cut(s) 20, 30, 44, 163, 227, 286
CviQI GTAC 3 cut(s) 115, 274, 310
DpnI GATC 3 cut(s) 218, 350, 359
DpnII GATC 3 cut(s) 216, 348, 357
DraIII CACNNNGTG 1 cut(s) 93
DrdI GACNNNNNNGTC 2 cut(s) 185, 404
DriI GACNNNNNGTC 1 cut(s) 129
DseDI GACNNNNNNGTC 2 cut(s) 185, 404
EaeI YGGCCR 1 cut(s) 225
Eam1105I GACNNNNNGTC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 296
Eco47I GGWCC 2 cut(s) 366, 387
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 170
Eco72I CACGTG 2 cut(s) 209, 231
EcoICRI GAGCTC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 383
EcoT38I GRGCYC 1 cut(s) 288
FaeI CATG 1 cut(s) 310
FaiI YATR 2 cut(s) 119, 308
FatI CATG 1 cut(s) 306
FauI CCCGC 1 cut(s) 9
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 2 cut(s) 21, 377
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 2 cut(s) 21, 377
GlaI GCGC 6 cut(s) 6, 86, 194, 196, 250, 296
GluI GCNGC 2 cut(s) 21, 377
GsuI CTGGAG 1 cut(s) 367
HaeIII GGCC 4 cut(s) 20, 30, 44, 227
HapII CCGG 3 cut(s) 80, 136, 221
HgaI GACGC 2 cut(s) 119, 186
HhaI GCGC 6 cut(s) 7, 87, 195, 197, 251, 297
Hin1I GRCGYC 1 cut(s) 130
Hin1II CATG 1 cut(s) 310
Hin6I GCGC 6 cut(s) 5, 85, 193, 195, 249, 295
HinP1I GCGC 6 cut(s) 5, 85, 193, 195, 249, 295
HincII GTYRAC 2 cut(s) 49, 99
HindII GTYRAC 2 cut(s) 49, 99
HinfI GANTC 3 cut(s) 179, 323, 398
HpaII CCGG 3 cut(s) 80, 136, 221
HphI GGTGA 2 cut(s) 253, 385
Hpy166II GTNNAC 2 cut(s) 49, 99
Hpy188I TCNGA 5 cut(s) 150, 301, 328, 362, 403
Hpy8I GTNNAC 2 cut(s) 49, 99
Hpy99I CGWCG 6 cut(s) 28, 50, 59, 135, 202, 413
HpyAV CCTTC 3 cut(s) 238, 325, 331
HpyCH4III ACNGT 2 cut(s) 241, 366
HpyCH4IV ACGT 4 cut(s) 125, 208, 230, 258
HpyCH4V TGCA 1 cut(s) 376
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 160, 268, 292
HpySE526I ACGT 4 cut(s) 125, 208, 230, 258
Hsp92I GRCGYC 1 cut(s) 130
Hsp92II CATG 1 cut(s) 310
HspAI GCGC 6 cut(s) 5, 85, 193, 195, 249, 295
Kzo9I GATC 3 cut(s) 216, 348, 357
LmnI GCTCC 2 cut(s) 82, 302
Lsp1109I GCAGC 1 cut(s) 388
MaeII ACGT 4 cut(s) 125, 208, 230, 258
MaeIII GTNAC 2 cut(s) 187, 391
MalI GATC 3 cut(s) 218, 350, 359
MauBI CGCGCGCG 1 cut(s) 193
MboI GATC 3 cut(s) 216, 348, 357
MhlI GDGCHC 1 cut(s) 288
MlsI TGGCCA 1 cut(s) 227
MluNI TGGCCA 1 cut(s) 227
MlyI GAGTC 3 cut(s) 173, 317, 392
MnlI CCTC 4 cut(s) 195, 247, 334, 397
Mox20I TGGCCA 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 164
MscI TGGCCA 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 227
MspI CCGG 3 cut(s) 80, 136, 221
MspR9I CCNGG 3 cut(s) 80, 221, 385
MvaI CCWGG 1 cut(s) 385
MvnI CGCG 7 cut(s) 7, 23, 193, 195, 197, 251, 295
MwoI GCNNNNNNNGC 4 cut(s) 13, 160, 268, 292
NciI CCSGG 2 cut(s) 80, 221
NdeII GATC 3 cut(s) 216, 348, 357
NlaIII CATG 1 cut(s) 310
NmuCI GTSAC 2 cut(s) 187, 391
PauI GCGCGC 1 cut(s) 193
PcsI WCGNNNNNNNCGW 3 cut(s) 197, 324, 414
PdmI GAANNNNTTC 1 cut(s) 164
PkrI GCNGC 2 cut(s) 22, 378
Ple19I CGATCG 1 cut(s) 360
PleI GAGTC 3 cut(s) 173, 317, 392
PmaCI CACGTG 2 cut(s) 209, 231
PmlI CACGTG 2 cut(s) 209, 231
PpsI GAGTC 3 cut(s) 173, 317, 392
Ppu21I YACGTR 2 cut(s) 209, 231
Psp124BI GAGCTC 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 383
PspCI CACGTG 2 cut(s) 209, 231
PspGI CCWGG 1 cut(s) 383
PspPI GGNCC 4 cut(s) 18, 28, 366, 387
PsrI GAACNNNNNNTAC 2 cut(s) 257, 289
PteI GCGCGC 1 cut(s) 193
PvuI CGATCG 1 cut(s) 360
RsaI GTAC 3 cut(s) 116, 275, 311
RsaNI GTAC 3 cut(s) 115, 274, 310
SacI GAGCTC 1 cut(s) 288
SalI GTCGAC 1 cut(s) 47
SatI GCNGC 2 cut(s) 21, 377
Sau3AI GATC 3 cut(s) 216, 348, 357
Sau96I GGNCC 4 cut(s) 18, 28, 366, 387
SchI GAGTC 3 cut(s) 173, 317, 392
ScrFI CCNGG 3 cut(s) 80, 221, 385
SduI GDGCHC 1 cut(s) 288
SetI ASST 8 cut(s) 128, 165, 211, 233, 261, 288, 389, 408
SgrAI CRCCGGYG 1 cut(s) 135
SinI GGWCC 2 cut(s) 366, 387
SsiI CCGC 4 cut(s) 16, 21, 183, 251
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 78, 219, 383
TaaI ACNGT 2 cut(s) 241, 366
TaiI ACGT 4 cut(s) 128, 211, 233, 261
TaqI TCGA 5 cut(s) 48, 200, 282, 356, 411
TaqII GACCGA 1 cut(s) 50
TatI WGTACW 2 cut(s) 114, 309
TauI GCSGC 1 cut(s) 23
TseFI GTSAC 2 cut(s) 187, 391
TseI GCWGC 1 cut(s) 376
Tsp45I GTSAC 2 cut(s) 187, 391
TspDTI ATGAA 1 cut(s) 304
TspGWI ACGGA 1 cut(s) 379
VpaK11BI GGWCC 2 cut(s) 366, 387
XmiI GTMKAC 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.