Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006020

Physical Location & Seq

Genomic Coordinates Reverse (-)

59973867 .. 59974304

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G031790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGAGTCTGTGGCGGGCCGCGACGGGCCTGACCGATAAGGCCGACGACCACGACGGCGTGGAGTTCTGGTCAAACCCGGAGCGCGCGGGGTGGTTGACCAAGCAAGGCGAGTACATAAAGACGTGGCGTCGCCGGTGGTTCGTTCTGAAGCAAGGGAAGCTGTTCTGGTTCAAGGACTCCGCCGTCACGCGCGCGTCACGGACACGCGGCGTGATCCCGGTGGCCACGTGCCTGACGGTGAAGGGCGCGGAGGACGTGCTGAACAAGCAGTACGCGTTCGAGCTCTCCACGCGCTCCGAGACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGACTGGATCAACTCGATCGGACGGTCGATCGTGCAGCACTCCAGGTCCGTCACCGACTCCGAGGTCGTCGATTACGATAGCAACAACAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0032266 GO:0035091 GO:0043167 GO:0043168 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

145

Amino Acids

16.73

Weight (kDa)

7.83

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH	PF00169	28 - 124	2e-20	PH domain
PH_11	PF15413	35 - 121	5.8e-06	Pleckstrin homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05710
malus_domestica	MD01G1149900.v1.1 MD07G1216300.v1.1
prunus_persica	Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.3G164400_v2.0.a1
pyrus_communis	pycom01g16790 pycom07g19870
rosa_chinensis	RchiOBHm_Chr1g0369831
rosa_laevigata	RLG00000027085 RLG00000027102
rosa_multiflora	Rmu_sc0008140.1_g000007
rosa_roxburghii	Rroxscaffold_4G00287060
rosa_rugosa	Rorug01G0352600
rosa_samantha	Rh1AG361100 Rh1BG324800 Rh1CG338000 Rh1DG355200
rosa_wichuraiana	Rw0G015490 Rw1G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	185, 404
AciI	CCGC	6 cut(s)	16, 21, 89, 183, 210, 251
AclWI	GGATC	2 cut(s)	211, 356
AcoI	YGGCCR	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	170
AcvI	CACGTG	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	130
AfaI	GTAC	3 cut(s)	116, 275, 311
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	175
AhdI	GACNNNNNGTC	1 cut(s)	129
AjiI	CACGTC	2 cut(s)	126, 259
AjnI	CCWGG	1 cut(s)	383
AluBI	AGCT	2 cut(s)	163, 286
AluI	AGCT	2 cut(s)	163, 286
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	211, 356
AoxI	GGCC	4 cut(s)	18, 28, 42, 225
ApeKI	GCWGC	1 cut(s)	376
Asp700I	GAANNNNTTC	1 cut(s)	164
AspLEI	GCGC	6 cut(s)	87, 89, 195, 197, 251, 297
AspS9I	GGNCC	3 cut(s)	18, 28, 387
AsuC2I	CCSGG	2 cut(s)	80, 221
AsuHPI	GGTGA	2 cut(s)	253, 385
AvaII	GGWCC	1 cut(s)	387
BalI	TGGCCA	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	288
BbrPI	CACGTG	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	388
BceAI	ACGGC	2 cut(s)	73, 170
BciT130I	CCWGG	1 cut(s)	385
BcnI	CCSGG	2 cut(s)	80, 221
BcoDI	GTCTC	1 cut(s)	296
BisI	GCNGC	3 cut(s)	21, 211, 377
BlsI	GCNGC	3 cut(s)	22, 212, 378
Bme1390I	CCNGG	3 cut(s)	80, 221, 385
Bme18I	GGWCC	1 cut(s)	387
BmeRI	GACNNNNNGTC	1 cut(s)	129
BmgBI	CACGTC	2 cut(s)	126, 259
BmgT120I	GGNCC	3 cut(s)	18, 28, 387
BmrFI	CCNGG	3 cut(s)	80, 221, 385
BpmI	CTGGAG	1 cut(s)	367
BpuMI	CCSGG	2 cut(s)	80, 221
BsaAI	YACGTR	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	402
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse118I	RCCGGY	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	1 cut(s)	402
BseNI	ACTGG	1 cut(s)	350
BsePI	GCGCGC	2 cut(s)	85, 193
BseXI	GCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	395
Bsh1285I	CGRYCG	3 cut(s)	360, 368, 372
BshFI	GGCC	4 cut(s)	20, 30, 44, 227
BsiEI	CGRYCG	3 cut(s)	360, 368, 372
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	3 cut(s)	80, 136, 221
BsmAI	GTCTC	1 cut(s)	296
BsnI	GGCC	4 cut(s)	20, 30, 44, 227
Bso31I	GGTCTC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	4 cut(s)	216, 348, 357, 369
BspACI	CCGC	6 cut(s)	16, 21, 89, 183, 210, 251
BspANI	GGCC	4 cut(s)	20, 30, 44, 227
BspPI	GGATC	2 cut(s)	211, 356
BspTNI	GGTCTC	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	402
BssHII	GCGCGC	2 cut(s)	85, 193
BssMI	GATC	4 cut(s)	216, 348, 357, 369
BssNI	GRCGYC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	2 cut(s)	241, 366
BstACI	GRCGYC	1 cut(s)	130
BstBAI	YACGTR	1 cut(s)	231
BstC8I	GCNNGC	3 cut(s)	18, 87, 195
BstHHI	GCGC	6 cut(s)	87, 89, 195, 197, 251, 297
BstKTI	GATC	4 cut(s)	219, 351, 360, 372
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	4 cut(s)	216, 348, 357, 369
BstMCI	CGRYCG	3 cut(s)	360, 368, 372
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 268, 292
BstNI	CCWGG	1 cut(s)	385
BstSCI	CCNGG	3 cut(s)	78, 219, 383
BstV1I	GCAGC	1 cut(s)	388
BsuRI	GGCC	4 cut(s)	20, 30, 44, 227
BtgZI	GCGATG	1 cut(s)	301
BtrI	CACGTC	2 cut(s)	126, 259
Cac8I	GCNNGC	3 cut(s)	18, 87, 195
CfoI	GCGC	6 cut(s)	87, 89, 195, 197, 251, 297
Cfr10I	RCCGGY	1 cut(s)	135
Cfr13I	GGNCC	3 cut(s)	18, 28, 387
CseI	GACGC	2 cut(s)	119, 186
Csp6I	GTAC	3 cut(s)	115, 274, 310
CviAII	CATG	1 cut(s)	307
CviJI	RGCY	6 cut(s)	20, 30, 44, 163, 227, 286
CviKI_1	RGCY	6 cut(s)	20, 30, 44, 163, 227, 286
CviQI	GTAC	3 cut(s)	115, 274, 310
DpnI	GATC	4 cut(s)	218, 350, 359, 371
DpnII	GATC	4 cut(s)	216, 348, 357, 369
DrdI	GACNNNNNNGTC	2 cut(s)	185, 404
DriI	GACNNNNNGTC	1 cut(s)	129
DseDI	GACNNNNNNGTC	2 cut(s)	185, 404
EaeI	YGGCCR	1 cut(s)	225
Eam1105I	GACNNNNNGTC	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	172
Ecl136II	GAGCTC	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	288
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	387
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	170
Eco72I	CACGTG	1 cut(s)	231
EcoICRI	GAGCTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	1 cut(s)	310
FaiI	YATR	2 cut(s)	119, 308
FatI	CATG	1 cut(s)	306
FauI	CCCGC	2 cut(s)	9, 82
Fnu4HI	GCNGC	3 cut(s)	21, 211, 377
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	3 cut(s)	21, 211, 377
GlaI	GCGC	6 cut(s)	86, 88, 194, 196, 250, 296
GluI	GCNGC	3 cut(s)	21, 211, 377
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	4 cut(s)	20, 30, 44, 227
HapII	CCGG	3 cut(s)	80, 136, 221
HgaI	GACGC	2 cut(s)	119, 186
HhaI	GCGC	6 cut(s)	87, 89, 195, 197, 251, 297
Hin1I	GRCGYC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	6 cut(s)	85, 87, 193, 195, 249, 295
HinP1I	GCGC	6 cut(s)	85, 87, 193, 195, 249, 295
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	4 cut(s)	7, 179, 323, 398
HpaII	CCGG	3 cut(s)	80, 136, 221
HphI	GGTGA	2 cut(s)	253, 385
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	5 cut(s)	150, 301, 328, 362, 403
Hpy8I	GTNNAC	1 cut(s)	99
Hpy99I	CGWCG	5 cut(s)	28, 50, 59, 135, 413
HpyAV	CCTTC	3 cut(s)	238, 325, 331
HpyCH4III	ACNGT	2 cut(s)	241, 366
HpyCH4IV	ACGT	3 cut(s)	125, 230, 258
HpyCH4V	TGCA	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 268, 292
HpySE526I	ACGT	3 cut(s)	125, 230, 258
Hsp92I	GRCGYC	1 cut(s)	130
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	6 cut(s)	85, 87, 193, 195, 249, 295
Kzo9I	GATC	4 cut(s)	216, 348, 357, 369
LmnI	GCTCC	2 cut(s)	82, 302
Lsp1109I	GCAGC	1 cut(s)	388
MaeII	ACGT	3 cut(s)	125, 230, 258
MaeIII	GTNAC	3 cut(s)	187, 198, 391
MalI	GATC	4 cut(s)	218, 350, 359, 371
MauBI	CGCGCGCG	1 cut(s)	193
MboI	GATC	4 cut(s)	216, 348, 357, 369
MhlI	GDGCHC	1 cut(s)	288
MlsI	TGGCCA	1 cut(s)	227
MluI	ACGCGT	1 cut(s)	276
MluNI	TGGCCA	1 cut(s)	227
MlyI	GAGTC	4 cut(s)	16, 173, 317, 392
MnlI	CCTC	3 cut(s)	247, 334, 397
Mox20I	TGGCCA	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	227
MspI	CCGG	3 cut(s)	80, 136, 221
MspR9I	CCNGG	3 cut(s)	80, 221, 385
MvaI	CCWGG	1 cut(s)	385
MwoI	GCNNNNNNNGC	3 cut(s)	160, 268, 292
NciI	CCSGG	2 cut(s)	80, 221
NdeII	GATC	4 cut(s)	216, 348, 357, 369
NlaIII	CATG	1 cut(s)	310
NmuCI	GTSAC	3 cut(s)	187, 198, 391
PauI	GCGCGC	2 cut(s)	85, 193
PcsI	WCGNNNNNNNCGW	2 cut(s)	324, 414
PdmI	GAANNNNTTC	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	22, 212, 378
Ple19I	CGATCG	2 cut(s)	360, 372
PleI	GAGTC	4 cut(s)	15, 173, 317, 392
PmaCI	CACGTG	1 cut(s)	231
PmlI	CACGTG	1 cut(s)	231
PpsI	GAGTC	4 cut(s)	15, 173, 317, 392
Ppu21I	YACGTR	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	383
PspCI	CACGTG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	383
PspPI	GGNCC	3 cut(s)	18, 28, 387
PsrI	GAACNNNNNNTAC	2 cut(s)	257, 289
PteI	GCGCGC	2 cut(s)	85, 193
PvuI	CGATCG	2 cut(s)	360, 372
RsaI	GTAC	3 cut(s)	116, 275, 311
RsaNI	GTAC	3 cut(s)	115, 274, 310
SacI	GAGCTC	1 cut(s)	288
SatI	GCNGC	3 cut(s)	21, 211, 377
Sau3AI	GATC	4 cut(s)	216, 348, 357, 369
Sau96I	GGNCC	3 cut(s)	18, 28, 387
SchI	GAGTC	4 cut(s)	16, 173, 317, 392
ScrFI	CCNGG	3 cut(s)	80, 221, 385
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	7 cut(s)	128, 165, 233, 261, 288, 389, 408
SgrAI	CRCCGGYG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	387
SsiI	CCGC	6 cut(s)	16, 21, 89, 183, 210, 251
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	3 cut(s)	78, 219, 383
TaaI	ACNGT	2 cut(s)	241, 366
TaiI	ACGT	3 cut(s)	128, 233, 261
TaqI	TCGA	4 cut(s)	282, 356, 368, 411
TaqII	GACCGA	1 cut(s)	50
TatI	WGTACW	2 cut(s)	114, 309
TauI	GCSGC	2 cut(s)	23, 213
TseFI	GTSAC	3 cut(s)	187, 198, 391
TseI	GCWGC	1 cut(s)	376
Tsp45I	GTSAC	3 cut(s)	187, 198, 391
TspDTI	ATGAA	1 cut(s)	304
TspGWI	ACGGA	2 cut(s)	217, 379
VpaK11BI	GGWCC	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.