Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006020

Physical Location & Seq

Genomic Coordinates Reverse (-)

29372933 .. 29373358

Gene Structure 426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1216300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCGAGCCTATGGCGGGCCGCGATGGGCCAGACGGAGCAGACCAACGACGGCGTCGAGTTCTGGTCGAACCCCGAGCGCACCGGCTGGTTGACCAAACAAGGCGAGTATATAAAGACGTGGCGTCGCCGGTGGTTCGTGCTCAAGCAAGGCAAGCTCTTCTGGTTCAAGGACTCCGCCGTGACCCGTGGCTCCACGCCACGTGGAGTGATCCCGGTGGCGTCGTGCCTCACAGTGAAGGGAGCCGAGGACGTCCTCAACAAGCAGTACGCGTTCGAGCTGTCTACGCGCTCCGAGACGATGTACTTCATCGCCGACTCGGAGAAGGAGAAGGAGGACTGGATCAACTCGATCGGACGGTCCATAGTGCAGCACTCGAGGTCGGTCACCGACTCCGAGGTTGTCGATTACGATAGCAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0032266 GO:0035091 GO:0043167 GO:0043168 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

142

Amino Acids

16.3

Weight (kDa)

8.68

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH	PF00169	26 - 122	3.2e-21	PH domain
PH_11	PF15413	33 - 119	1e-05	Pleckstrin homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05710
malus_domestica	MD01G1149900.v1.1 MD07G1216300.v1.1
prunus_persica	Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.2G248200_v2.0.a1 Prupe.3G164400_v2.0.a1
pyrus_communis	pycom01g16790 pycom07g19870
rosa_chinensis	RchiOBHm_Chr1g0369831
rosa_laevigata	RLG00000027085 RLG00000027102
rosa_multiflora	Rmu_sc0008140.1_g000007
rosa_roxburghii	Rroxscaffold_4G00287060
rosa_rugosa	Rorug01G0352600
rosa_samantha	Rh1AG361100 Rh1BG324800 Rh1CG338000 Rh1DG355200
rosa_wichuraiana	Rw0G015490 Rw1G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AccI	GTMKAC	1 cut(s)	284
AccII	CGCG	3 cut(s)	23, 272, 289
AciI	CCGC	3 cut(s)	16, 21, 177
AclWI	GGATC	2 cut(s)	205, 350
AcvI	CACGTG	1 cut(s)	203
AcyI	GRCGYC	4 cut(s)	54, 124, 221, 252
AfaI	GTAC	2 cut(s)	269, 305
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	1 cut(s)	169
AhdI	GACNNNNNGTC	1 cut(s)	123
AjiI	CACGTC	1 cut(s)	120
AluBI	AGCT	2 cut(s)	157, 280
AluI	AGCT	2 cut(s)	157, 280
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	2 cut(s)	205, 350
Ama87I	CYCGRG	2 cut(s)	74, 376
AoxI	GGCC	2 cut(s)	18, 28
ApeKI	GCWGC	1 cut(s)	370
AspLEI	GCGC	2 cut(s)	81, 291
AspS9I	GGNCC	3 cut(s)	18, 28, 360
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	379
AvaI	CYCGRG	2 cut(s)	74, 376
AvaII	GGWCC	1 cut(s)	360
BbrPI	CACGTG	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	1 cut(s)	19
BceAI	ACGGC	2 cut(s)	67, 164
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	290
BisI	GCNGC	2 cut(s)	21, 371
BlsI	GCNGC	2 cut(s)	22, 372
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	360
BmeRI	GACNNNNNGTC	1 cut(s)	123
BmeT110I	CYCGRG	2 cut(s)	74, 376
BmgBI	CACGTC	1 cut(s)	120
BmgT120I	GGNCC	3 cut(s)	18, 28, 360
BmiI	GGNNCC	2 cut(s)	193, 244
BmrFI	CCNGG	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	203
BsaHI	GRCGYC	4 cut(s)	54, 124, 221, 252
BsaJI	CCNNGG	3 cut(s)	187, 246, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse118I	RCCGGY	2 cut(s)	83, 129
Bse1I	ACTGG	1 cut(s)	344
BseDI	CCNNGG	3 cut(s)	187, 246, 396
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseNI	ACTGG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	382
BsgI	GTGCAG	1 cut(s)	389
Bsh1236I	CGCG	3 cut(s)	23, 272, 289
Bsh1285I	CGRYCG	1 cut(s)	354
BshFI	GGCC	2 cut(s)	20, 30
BsiEI	CGRYCG	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	144
BsiHKCI	CYCGRG	2 cut(s)	74, 376
BsiSI	CCGG	3 cut(s)	84, 130, 215
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	290
BsmBI	CGTCTC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	20, 30
BsoBI	CYCGRG	2 cut(s)	74, 376
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	3 cut(s)	210, 342, 351
BspACI	CCGC	3 cut(s)	16, 21, 177
BspANI	GGCC	2 cut(s)	20, 30
BspFNI	CGCG	3 cut(s)	23, 272, 289
BspLI	GGNNCC	2 cut(s)	193, 244
BspPI	GGATC	2 cut(s)	205, 350
BspQI	GCTCTTC	1 cut(s)	164
BsrFI	RCCGGY	2 cut(s)	83, 129
BsrI	ACTGG	1 cut(s)	344
BssAI	RCCGGY	2 cut(s)	83, 129
BssECI	CCNNGG	3 cut(s)	187, 246, 396
BssMI	GATC	3 cut(s)	210, 342, 351
BssNI	GRCGYC	4 cut(s)	54, 124, 221, 252
Bst4CI	ACNGT	2 cut(s)	235, 360
Bst6I	CTCTTC	1 cut(s)	164
BstACI	GRCGYC	4 cut(s)	54, 124, 221, 252
BstBAI	YACGTR	1 cut(s)	203
BstC8I	GCNNGC	3 cut(s)	7, 18, 155
BstDSI	CCRYGG	1 cut(s)	187
BstEII	GGTNACC	1 cut(s)	385
BstFNI	CGCG	3 cut(s)	23, 272, 289
BstHHI	GCGC	2 cut(s)	81, 291
BstKTI	GATC	3 cut(s)	213, 345, 354
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	3 cut(s)	210, 342, 351
BstMCI	CGRYCG	1 cut(s)	354
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 286
BstPI	GGTNACC	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	213
BstUI	CGCG	3 cut(s)	23, 272, 289
BstV1I	GCAGC	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	20, 30
BtgI	CCRYGG	1 cut(s)	187
BtgZI	GCGATG	2 cut(s)	38, 295
BtrI	CACGTC	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	3 cut(s)	7, 18, 155
CfoI	GCGC	2 cut(s)	81, 291
Cfr10I	RCCGGY	2 cut(s)	83, 129
Cfr13I	GGNCC	3 cut(s)	18, 28, 360
CseI	GACGC	3 cut(s)	43, 113, 210
Csp6I	GTAC	2 cut(s)	268, 304
CviJI	RGCY	8 cut(s)	9, 20, 30, 87, 157, 192, 245, 280
CviKI_1	RGCY	8 cut(s)	9, 20, 30, 87, 157, 192, 245, 280
CviQI	GTAC	2 cut(s)	268, 304
DpnI	GATC	3 cut(s)	212, 344, 353
DpnII	GATC	3 cut(s)	210, 342, 351
DriI	GACNNNNNGTC	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	164
Eam1105I	GACNNNNNGTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	360
Eco72I	CACGTG	1 cut(s)	203
Eco88I	CYCGRG	2 cut(s)	74, 376
Eco91I	GGTNACC	1 cut(s)	385
EcoO65I	GGTNACC	1 cut(s)	385
Esp3I	CGTCTC	1 cut(s)	290
FaiI	YATR	4 cut(s)	13, 111, 113, 365
FauI	CCCGC	1 cut(s)	9
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	2 cut(s)	21, 371
Fsp4HI	GCNGC	2 cut(s)	21, 371
GlaI	GCGC	2 cut(s)	80, 290
GluI	GCNGC	2 cut(s)	21, 371
HaeIII	GGCC	2 cut(s)	20, 30
HapII	CCGG	3 cut(s)	84, 130, 215
HgaI	GACGC	3 cut(s)	43, 113, 210
HhaI	GCGC	2 cut(s)	81, 291
Hin1I	GRCGYC	4 cut(s)	54, 124, 221, 252
Hin6I	GCGC	2 cut(s)	79, 289
HinP1I	GCGC	2 cut(s)	79, 289
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HinfI	GANTC	3 cut(s)	173, 317, 392
HpaII	CCGG	3 cut(s)	84, 130, 215
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	2 cut(s)	93, 285
Hpy188I	TCNGA	4 cut(s)	295, 322, 356, 397
Hpy8I	GTNNAC	2 cut(s)	93, 285
Hpy99I	CGWCG	4 cut(s)	53, 59, 129, 226
HpyAV	CCTTC	3 cut(s)	232, 319, 325
HpyCH4III	ACNGT	2 cut(s)	235, 360
HpyCH4IV	ACGT	3 cut(s)	119, 202, 252
HpyCH4V	TGCA	1 cut(s)	370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 286
HpySE526I	ACGT	3 cut(s)	119, 202, 252
Hsp92I	GRCGYC	4 cut(s)	54, 124, 221, 252
HspAI	GCGC	2 cut(s)	79, 289
Kzo9I	GATC	3 cut(s)	210, 342, 351
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	4 cut(s)	37, 197, 242, 296
LpnPI	CCDG	8 cut(s)	44, 49, 73, 97, 143, 148, 228, 325
Lsp1109I	GCAGC	1 cut(s)	382
MaeII	ACGT	3 cut(s)	119, 202, 252
MaeIII	GTNAC	2 cut(s)	181, 385
MalI	GATC	3 cut(s)	212, 344, 353
MboI	GATC	3 cut(s)	210, 342, 351
MboII	GAAGA	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	144
MluI	ACGCGT	1 cut(s)	270
MlyI	GAGTC	3 cut(s)	167, 311, 386
MnlI	CCTC	6 cut(s)	239, 241, 266, 328, 372, 391
MspI	CCGG	3 cut(s)	84, 130, 215
MspR9I	CCNGG	1 cut(s)	215
MvnI	CGCG	3 cut(s)	23, 272, 289
MwoI	GCNNNNNNNGC	2 cut(s)	154, 286
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	3 cut(s)	210, 342, 351
NlaIV	GGNNCC	2 cut(s)	193, 244
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	2 cut(s)	181, 385
PaeR7I	CTCGAG	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PflFI	GACNNNGTC	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	22, 372
Ple19I	CGATCG	1 cut(s)	354
PleI	GAGTC	3 cut(s)	167, 311, 386
PmaCI	CACGTG	1 cut(s)	203
PmlI	CACGTG	1 cut(s)	203
PpsI	GAGTC	3 cut(s)	167, 311, 386
Ppu21I	YACGTR	1 cut(s)	203
PspCI	CACGTG	1 cut(s)	203
PspEI	GGTNACC	1 cut(s)	385
PspN4I	GGNNCC	2 cut(s)	193, 244
PspPI	GGNCC	3 cut(s)	18, 28, 360
PspXI	VCTCGAGB	1 cut(s)	376
PsyI	GACNNNGTC	1 cut(s)	53
PvuI	CGATCG	1 cut(s)	354
RsaI	GTAC	2 cut(s)	269, 305
RsaNI	GTAC	2 cut(s)	268, 304
SapI	GCTCTTC	1 cut(s)	164
SatI	GCNGC	2 cut(s)	21, 371
Sau3AI	GATC	3 cut(s)	210, 342, 351
Sau96I	GGNCC	3 cut(s)	18, 28, 360
SchI	GAGTC	3 cut(s)	167, 311, 386
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	7 cut(s)	122, 159, 205, 255, 282, 383, 402
Sfr274I	CTCGAG	1 cut(s)	376
SgrAI	CRCCGGYG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	360
SlaI	CTCGAG	1 cut(s)	376
SmlI	CTYRAG	2 cut(s)	143, 376
SmoI	CTYRAG	2 cut(s)	143, 376
SsiI	CCGC	3 cut(s)	16, 21, 177
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	235, 360
TaiI	ACGT	3 cut(s)	122, 205, 255
TaqI	TCGA	6 cut(s)	57, 68, 276, 350, 377, 405
TaqII	GACCGA	1 cut(s)	373
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	1 cut(s)	23
TscAI	CASTG	1 cut(s)	240
TseFI	GTSAC	2 cut(s)	181, 385
TseI	GCWGC	1 cut(s)	370
Tsp45I	GTSAC	2 cut(s)	181, 385
TspDTI	ATGAA	1 cut(s)	298
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	240
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	360
XhoI	CTCGAG	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	284
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.