AT5G07490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015865
Physical Location & Seq
Forward (+)
2370133 .. 2371326
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G07490.1

Sequence Viewer

Length: 450 bp
ATGTACAGATCCGCGAGCTGGAACCGTGTGACCGAGGATTACTCGGTGCCTTGGTCCGCACCAAAGGGATTATGGAAGGGCTTAGACGAAGACGAGCCGGCTCCATACGATCCCACTGGCCAAGAGATGACTAAGAAAGAGAAGTCACGTACCAAGTTTGCTGAAAACGCCGTTCACATAATCCCTTTTGTCCTTCTTGCTTGTGCTCTCGTCCTTTGGTTCTTCTCTAATCCAGATGTAGATGTTGGGGTGAAAGGGGACTCCATTGCGGCTAGGATTGAAGGATTAACGATCGAAGGAGACATTGACAATGACAGCGACGGAACTCAGACCGGATTCTTAGGAGCCGCCACAGAGGTCGGACATTCAAAAAATAAACTAAAACGCGAGGCTAATAAACGCAATCGGAGGATACAAGCTTCAAGGAAAGTGATGAAAGGTTTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.65

Weight (kDa)

7.81

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015865)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07490 AT5G61630
fragaria_vesca FvH4_7g26830
malus_domestica MD07G1247700.v1.1
prunus_persica Prupe.2G271700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0373521
rosa_laevigata RLG00000026819
rosa_multiflora Rmu_co8371649.1_g000001
rosa_roxburghii Rroxscaffold_4G00284180
rosa_rugosa Rorug01G0377800
rosa_samantha Rh1AG387200 Rh1BG351600 Rh1CG364300 Rh1DG382000
rosa_wichuraiana Rw1G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccII CGCG 2 cut(s) 14, 387
AciI CCGC 4 cut(s) 12, 57, 269, 348
AclWI GGATC 2 cut(s) 3, 104
AcoI YGGCCR 1 cut(s) 118
AfaI GTAC 2 cut(s) 5, 151
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 3 cut(s) 281, 369, 423
AluBI AGCT 2 cut(s) 18, 419
AluI AGCT 2 cut(s) 18, 419
Alw21I GWGCWC 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 294
AlwI GGATC 2 cut(s) 3, 104
AoxI GGCC 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 262
AvaII GGWCC 1 cut(s) 54
BalI TGGCCA 1 cut(s) 120
BanI GGYRCC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 155
BciVI GTATCC 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 1 cut(s) 273
BfuI GTATCC 1 cut(s) 405
BisI GCNGC 2 cut(s) 270, 348
BlsI GCNGC 2 cut(s) 271, 349
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 4 cut(s) 23, 48, 102, 346
BpiI GAAGAC 1 cut(s) 96
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BsaAI YACGTR 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 33, 50
BsaWI WCCGGW 1 cut(s) 332
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 264
BseDI CCNNGG 2 cut(s) 33, 50
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 121
Bsh1236I CGCG 2 cut(s) 14, 387
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 1 cut(s) 120
BshNI GGYRCC 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 208
BsiSI CCGG 2 cut(s) 98, 333
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 294
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 208
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 8, 109, 291
BspACI CCGC 4 cut(s) 12, 57, 269, 348
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 1 cut(s) 340
BspFNI CGCG 2 cut(s) 14, 387
BspLI GGNNCC 4 cut(s) 23, 48, 102, 346
BspPI GGATC 2 cut(s) 3, 104
BspT107I GGYRCC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 2 cut(s) 33, 50
BssMI GATC 3 cut(s) 8, 109, 291
BssT1I CCWWGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 26
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 149
BstC8I GCNNGC 2 cut(s) 16, 99
BstDEI CTNAG 4 cut(s) 82, 132, 327, 340
BstFNI CGCG 2 cut(s) 14, 387
BstKTI GATC 3 cut(s) 11, 112, 294
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 3 cut(s) 8, 109, 291
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstUI CGCG 2 cut(s) 14, 387
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BsuI GTATCC 1 cut(s) 405
BsuRI GGCC 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 16, 99
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 54
Csp6I GTAC 2 cut(s) 4, 150
CviJI RGCY 9 cut(s) 18, 81, 97, 101, 120, 272, 347, 392, 419
CviKI_1 RGCY 9 cut(s) 18, 81, 97, 101, 120, 272, 347, 392, 419
CviQI GTAC 2 cut(s) 4, 150
DdeI CTNAG 4 cut(s) 82, 132, 327, 340
DpnI GATC 3 cut(s) 10, 111, 293
DpnII GATC 3 cut(s) 8, 109, 291
EaeI YGGCCR 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 50
FaiI YATR 3 cut(s) 73, 106, 179
FaqI GGGAC 1 cut(s) 272
Fnu4HI GCNGC 2 cut(s) 270, 348
Fsp4HI GCNGC 2 cut(s) 270, 348
FspBI CTAG 1 cut(s) 273
GluI GCNGC 2 cut(s) 270, 348
HaeIII GGCC 1 cut(s) 120
HapII CCGG 2 cut(s) 98, 333
HindIII AAGCTT 1 cut(s) 417
HinfI GANTC 2 cut(s) 260, 336
HpaII CCGG 2 cut(s) 98, 333
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 3 cut(s) 330, 362, 408
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 4 cut(s) 70, 203, 275, 290
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 4 cut(s) 82, 132, 327, 340
HpySE526I ACGT 1 cut(s) 148
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
Kzo9I GATC 3 cut(s) 8, 109, 291
LmnI GCTCC 2 cut(s) 106, 344
LpnPI CCDG 5 cut(s) 4, 102, 111, 246, 346
MaeI CTAG 1 cut(s) 273
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 2 cut(s) 28, 144
MalI GATC 3 cut(s) 10, 111, 293
MboI GATC 3 cut(s) 8, 109, 291
MboII GAAGA 2 cut(s) 101, 214
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 208
MlsI TGGCCA 1 cut(s) 120
MluNI TGGCCA 1 cut(s) 120
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 4 cut(s) 28, 349, 382, 402
Mox20I TGGCCA 1 cut(s) 120
MroNI GCCGGC 1 cut(s) 97
MscI TGGCCA 1 cut(s) 120
MseI TTAA 2 cut(s) 287, 448
Msp20I TGGCCA 1 cut(s) 120
MspI CCGG 2 cut(s) 98, 333
MvnI CGCG 2 cut(s) 14, 387
MwoI GCNNNNNNNGC 1 cut(s) 167
NaeI GCCGGC 1 cut(s) 99
NdeII GATC 3 cut(s) 8, 109, 291
NgoMIV GCCGGC 1 cut(s) 97
NlaIV GGNNCC 4 cut(s) 23, 48, 102, 346
NmuCI GTSAC 2 cut(s) 28, 144
PdiI GCCGGC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 336
PkrI GCNGC 2 cut(s) 271, 349
Ple19I CGATCG 1 cut(s) 294
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Ppu21I YACGTR 1 cut(s) 149
PspN4I GGNNCC 4 cut(s) 23, 48, 102, 346
PspPI GGNCC 1 cut(s) 54
PsuI RGATCY 1 cut(s) 8
PvuI CGATCG 1 cut(s) 294
RsaI GTAC 2 cut(s) 5, 151
RsaNI GTAC 2 cut(s) 4, 150
SaqAI TTAA 2 cut(s) 287, 448
SatI GCNGC 2 cut(s) 270, 348
Sau3AI GATC 3 cut(s) 8, 109, 291
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 1 cut(s) 254
SduI GDGCHC 1 cut(s) 208
SetI ASST 5 cut(s) 20, 151, 360, 421, 442
SinI GGWCC 1 cut(s) 54
SsiI CCGC 4 cut(s) 12, 57, 269, 348
SspMI CTAG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 1 cut(s) 151
TaqI TCGA 1 cut(s) 294
TaqII GACCGA 1 cut(s) 47
TatI WGTACW 1 cut(s) 3
TauI GCSGC 2 cut(s) 272, 350
TfiI GAWTC 1 cut(s) 336
Tru1I TTAA 2 cut(s) 287, 448
Tru9I TTAA 2 cut(s) 287, 448
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 2 cut(s) 28, 144
Tsp45I GTSAC 2 cut(s) 28, 144
TspDTI ATGAA 1 cut(s) 449
TspGWI ACGGA 1 cut(s) 336
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 54
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.