Prupe.2G271700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015865
Physical Location & Seq
Forward (+)
27520284 .. 27521336
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G271700.1

Sequence Viewer

Length: 456 bp
ATGCACAGATCGGCAAGCTGGAGCCGGGCGGATGAGTACTTCATGCACCCAAACTCCTCCCCGTCAGCTGGGAAGGGGCCGTCGGGGCTACGGGTGTCAGTGTCGTTTGATCAAGGCGGTGATCAGCTGCCGGTGTACGATCCCATAGCAGAGCTGGCCAAGAAGGAAAGGTCTCGTGTTAAGTTCGCTGAGAATGCCGTGCATGTCATCCCCATTGTGCTTCTTCTATGCGCCTTTGTTCTTTGGTTCTTCTCAAATCCAGAGATAGACGTGCGGATTAAAACGGATCCAATAGCAGCAAGAATTGAAGGACTGACGTTAGAGGGGGAGATTGAGAATGATAGTGACGGGACTCAAACAGGCGGTCTGCCCATGATGGACTTGGGACTGGACTTGGATCAAACAACAACGACAATATCAACAACAACAAAGCAAATCAAACATAAATTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.61

Weight (kDa)

5.52

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015865)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07490 AT5G61630
fragaria_vesca FvH4_7g26830
malus_domestica MD07G1247700.v1.1
prunus_persica Prupe.2G271700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0373521
rosa_laevigata RLG00000026819
rosa_multiflora Rmu_co8371649.1_g000001
rosa_roxburghii Rroxscaffold_4G00284180
rosa_rugosa Rorug01G0377800
rosa_samantha Rh1AG387200 Rh1BG351600 Rh1CG364300 Rh1DG382000
rosa_wichuraiana Rw1G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 29, 117, 274, 363
AclWI GGATC 4 cut(s) 134, 281, 294, 405
AcoI YGGCCR 1 cut(s) 156
AfaI GTAC 2 cut(s) 38, 137
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 1 cut(s) 308
AjiI CACGTC 1 cut(s) 271
AluBI AGCT 4 cut(s) 18, 68, 127, 154
AluI AGCT 4 cut(s) 18, 68, 127, 154
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 4 cut(s) 134, 281, 294, 405
AoxI GGCC 2 cut(s) 77, 156
ApeKI GCWGC 2 cut(s) 127, 296
ArsI GACNNNNNNTTYG 2 cut(s) 349, 381
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 77
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 131
BalI TGGCCA 1 cut(s) 158
BamHI GGATCC 1 cut(s) 286
BauI CACGAG 1 cut(s) 174
BbvI GCAGC 2 cut(s) 114, 308
BccI CCATC 1 cut(s) 370
BceAI ACGGC 2 cut(s) 64, 182
BclI TGATCA 2 cut(s) 109, 121
BcnI CCSGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 177
BglI GCCNNNNNGGC 1 cut(s) 85
BisI GCNGC 2 cut(s) 128, 297
BlsI GCNGC 2 cut(s) 129, 298
BmcAI AGTACT 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 26
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 3 cut(s) 23, 78, 288
BmrFI CCNGG 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 393
BseGI GGATG 2 cut(s) 37, 207
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 393
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 2 cut(s) 114, 308
BseYI CCCAGC 1 cut(s) 68
BshFI GGCC 2 cut(s) 79, 158
BsiSI CCGG 2 cut(s) 25, 131
BslFI GGGAC 2 cut(s) 364, 399
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 177
BsmFI GGGAC 2 cut(s) 364, 399
BsmI GAATGC 1 cut(s) 199
BsnI GGCC 2 cut(s) 79, 158
Bso31I GGTCTC 1 cut(s) 177
Bsp143I GATC 6 cut(s) 8, 109, 121, 139, 286, 397
BspACI CCGC 4 cut(s) 29, 117, 274, 363
BspANI GGCC 2 cut(s) 79, 158
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 3 cut(s) 23, 78, 288
BspPI GGATC 4 cut(s) 134, 281, 294, 405
BspTNI GGTCTC 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 130
BsrI ACTGG 1 cut(s) 393
BssAI RCCGGY 1 cut(s) 130
BssMI GATC 6 cut(s) 8, 109, 121, 139, 286, 397
BssSI CACGAG 1 cut(s) 174
Bst2BI CACGAG 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 16, 156
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 2 cut(s) 37, 207
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 6 cut(s) 11, 112, 124, 142, 289, 400
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 6 cut(s) 8, 109, 121, 139, 286, 397
BstMWI GCNNNNNNNGC 3 cut(s) 85, 155, 194
BstNSI RCATGY 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 114, 308
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BsuRI GGCC 2 cut(s) 79, 158
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 2 cut(s) 37, 207
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 16, 156
CfoI GCGC 1 cut(s) 233
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 2 cut(s) 37, 136
CviAII CATG 3 cut(s) 43, 203, 373
CviJI RGCY 8 cut(s) 18, 24, 68, 79, 88, 127, 154, 158
CviKI_1 RGCY 8 cut(s) 18, 24, 68, 79, 88, 127, 154, 158
CviQI GTAC 2 cut(s) 37, 136
DdeI CTNAG 1 cut(s) 189
DpnI GATC 6 cut(s) 10, 111, 123, 141, 288, 399
DpnII GATC 6 cut(s) 8, 109, 121, 139, 286, 397
EaeI YGGCCR 1 cut(s) 156
EciI GGCGGA 1 cut(s) 44
Eco31I GGTCTC 1 cut(s) 177
FaeI CATG 3 cut(s) 46, 206, 376
FaiI YATR 6 cut(s) 44, 146, 204, 229, 374, 444
FaqI GGGAC 2 cut(s) 364, 399
FatI CATG 3 cut(s) 42, 202, 372
FbaI TGATCA 2 cut(s) 109, 121
Fnu4HI GCNGC 2 cut(s) 128, 297
FokI GGATG 2 cut(s) 44, 194
Fsp4HI GCNGC 2 cut(s) 128, 297
GlaI GCGC 1 cut(s) 232
GluI GCNGC 2 cut(s) 128, 297
GsaI CCCAGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 2 cut(s) 79, 158
HapII CCGG 2 cut(s) 25, 131
HhaI GCGC 1 cut(s) 233
Hin1II CATG 3 cut(s) 46, 206, 376
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 1 cut(s) 352
HpaII CCGG 2 cut(s) 25, 131
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 3 cut(s) 67, 157, 302
HpyCH4IV ACGT 2 cut(s) 270, 317
HpyCH4V TGCA 3 cut(s) 4, 46, 202
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 155, 194
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 2 cut(s) 270, 317
Hsp92II CATG 3 cut(s) 46, 206, 376
HspAI GCGC 1 cut(s) 231
Ksp22I TGATCA 2 cut(s) 109, 121
Kzo9I GATC 6 cut(s) 8, 109, 121, 139, 286, 397
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 8 cut(s) 4, 38, 54, 140, 144, 273, 345, 374
Lsp1109I GCAGC 2 cut(s) 114, 308
MaeII ACGT 2 cut(s) 270, 317
MaeIII GTNAC 1 cut(s) 344
MalI GATC 6 cut(s) 10, 111, 123, 141, 288, 399
MboI GATC 6 cut(s) 8, 109, 121, 139, 286, 397
MboII GAAGA 2 cut(s) 215, 241
MflI RGATCY 1 cut(s) 286
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 2 cut(s) 303, 446
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 1 cut(s) 346
MnlI CCTC 2 cut(s) 67, 316
Mox20I TGGCCA 1 cut(s) 158
MscI TGGCCA 1 cut(s) 158
MseI TTAA 3 cut(s) 180, 279, 449
Msp20I TGGCCA 1 cut(s) 158
MspA1I CMGCKG 2 cut(s) 68, 127
MspI CCGG 2 cut(s) 25, 131
MspR9I CCNGG 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 199
MwoI GCNNNNNNNGC 3 cut(s) 85, 155, 194
NciI CCSGG 1 cut(s) 26
NdeII GATC 6 cut(s) 8, 109, 121, 139, 286, 397
NlaIII CATG 3 cut(s) 46, 206, 376
NlaIV GGNNCC 3 cut(s) 23, 78, 288
NmuCI GTSAC 1 cut(s) 344
NspI RCATGY 1 cut(s) 206
PctI GAATGC 1 cut(s) 199
PkrI GCNGC 2 cut(s) 129, 298
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PspFI CCCAGC 1 cut(s) 68
PspN4I GGNNCC 3 cut(s) 23, 78, 288
PspPI GGNCC 1 cut(s) 77
PsuI RGATCY 1 cut(s) 286
PvuII CAGCTG 2 cut(s) 68, 127
RsaI GTAC 2 cut(s) 38, 137
RsaNI GTAC 2 cut(s) 37, 136
SaqAI TTAA 3 cut(s) 180, 279, 449
SatI GCNGC 2 cut(s) 128, 297
Sau3AI GATC 6 cut(s) 8, 109, 121, 139, 286, 397
Sau96I GGNCC 1 cut(s) 77
ScaI AGTACT 1 cut(s) 38
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 26
SetI ASST 7 cut(s) 20, 70, 129, 156, 173, 273, 320
Sse9I AATT 2 cut(s) 303, 446
SsiI CCGC 4 cut(s) 29, 117, 274, 363
StyD4I CCNGG 1 cut(s) 24
TaiI ACGT 2 cut(s) 273, 320
TasI AATT 2 cut(s) 303, 446
TatI WGTACW 1 cut(s) 36
Tru1I TTAA 3 cut(s) 180, 279, 449
Tru9I TTAA 3 cut(s) 180, 279, 449
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 2 cut(s) 127, 296
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 31
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 1 cut(s) 105
XceI RCATGY 1 cut(s) 206
XcmI CCANNNNNNNNNTGG 2 cut(s) 151, 379
ZrmI AGTACT 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.