AT5G61630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015865
Physical Location & Seq
Reverse (-)
24773229 .. 24774578
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61630.1

Sequence Viewer

Length: 444 bp
ATGTATAGATCCGCGAGCTGGAACCGAGTGCCAGAAGACTACTCATCCGCACCGCCTAAGGGATTGTGGATGGGCTCGGTGATCGGTCCCCTCGACGAGAACGAACTACCTTCCTACAATAATCCACCAGAGGAGATGGTTAAGAAGGAGAAGTCACGTGCCAAATTCGCAGAAAACGCCATTCACATCATACCATTTGTTCTCCTTGCATGCGCTCTCGTACTTTGGCTCTTCTCAAATCCAGATGTGGATGTTGGGATGAGAGAAGAATCTATTGCGGCTAAGATTGAAGGATTGACGATCGAAGGAGACATCGACAATGATAGCGATGGAACTCAGACCGGTTTCTTGGGTGCCACCTTAGAACTCGGAGATCCTGACAAACCAAACCTCACTGATAGAACCAGACGAGCTTCTAGGAAATTGATCAAAGGATTTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.33

Weight (kDa)

4.84

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015865)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07490 AT5G61630
fragaria_vesca FvH4_7g26830
malus_domestica MD07G1247700.v1.1
prunus_persica Prupe.2G271700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0373521
rosa_laevigata RLG00000026819
rosa_multiflora Rmu_co8371649.1_g000001
rosa_roxburghii Rroxscaffold_4G00284180
rosa_rugosa Rorug01G0377800
rosa_samantha Rh1AG387200 Rh1BG351600 Rh1CG364300 Rh1DG382000
rosa_wichuraiana Rw1G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 353
AccII CGCG 1 cut(s) 14
AciI CCGC 4 cut(s) 12, 48, 53, 278
AclWI GGATC 2 cut(s) 3, 368
AcsI RAATTY 1 cut(s) 164
AcvI CACGTG 1 cut(s) 158
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 2 cut(s) 18, 59
AgeI ACCGGT 1 cut(s) 341
AgsI TTSAA 1 cut(s) 290
AluBI AGCT 2 cut(s) 18, 413
AluI AGCT 2 cut(s) 18, 413
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 2 cut(s) 3, 368
ApoI RAATTY 1 cut(s) 164
AsiGI ACCGGT 1 cut(s) 341
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 1 cut(s) 86
AxyI CCTNAGG 1 cut(s) 57
BanI GGYRCC 1 cut(s) 353
BanII GRGCYC 1 cut(s) 77
BbrPI CACGTG 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 42
BccI CCATC 3 cut(s) 64, 130, 323
BclI TGATCA 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 303
BfaI CTAG 2 cut(s) 417, 442
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 3 cut(s) 23, 88, 355
BpiI GAAGAC 1 cut(s) 42
BsaAI YACGTR 1 cut(s) 158
BsaWI WCCGGW 1 cut(s) 341
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 59
Bse118I RCCGGY 1 cut(s) 341
Bse21I CCTNAGG 1 cut(s) 57
BseGI GGATG 4 cut(s) 44, 75, 256, 264
BseLI CCNNNNNNNGG 2 cut(s) 18, 59
BseMII CTCAG 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 303
BshNI GGYRCC 1 cut(s) 353
BshTI ACCGGT 1 cut(s) 341
BsiEI CGRYCG 1 cut(s) 303
BsiSI CCGG 1 cut(s) 342
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 2 cut(s) 18, 59
BsmAI GTCTC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 5 cut(s) 8, 81, 300, 373, 426
BspACI CCGC 4 cut(s) 12, 48, 53, 278
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 3 cut(s) 23, 88, 355
BspPI GGATC 2 cut(s) 3, 368
BspQI GCTCTTC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 353
BsrFI RCCGGY 1 cut(s) 341
BssAI RCCGGY 1 cut(s) 341
BssMI GATC 5 cut(s) 8, 81, 300, 373, 426
Bst6I CTCTTC 1 cut(s) 236
BstBAI YACGTR 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 16, 211
BstDEI CTNAG 4 cut(s) 57, 282, 336, 361
BstF5I GGATG 4 cut(s) 44, 75, 256, 264
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 5 cut(s) 11, 84, 303, 376, 429
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 5 cut(s) 8, 81, 300, 373, 426
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 2 cut(s) 167, 176
BstNSI RCATGY 1 cut(s) 213
BstUI CGCG 1 cut(s) 14
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 2 cut(s) 8, 373
BstYI RGATCY 2 cut(s) 8, 373
Bsu36I CCTNAGG 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 4 cut(s) 44, 75, 256, 264
BtsIMutI CAGTG 1 cut(s) 393
Cac8I GCNNGC 2 cut(s) 16, 211
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 221
CspAI ACCGGT 1 cut(s) 341
CviAII CATG 1 cut(s) 210
CviJI RGCY 5 cut(s) 18, 75, 229, 281, 413
CviKI_1 RGCY 5 cut(s) 18, 75, 229, 281, 413
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 4 cut(s) 57, 282, 336, 361
DpnI GATC 5 cut(s) 10, 83, 302, 375, 428
DpnII GATC 5 cut(s) 8, 81, 300, 373, 426
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 158
Eco81I CCTNAGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 77
FaeI CATG 1 cut(s) 213
FaiI YATR 3 cut(s) 6, 191, 211
FaqI GGGAC 1 cut(s) 72
FatI CATG 1 cut(s) 209
FbaI TGATCA 1 cut(s) 426
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 4 cut(s) 31, 82, 263, 271
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 2 cut(s) 417, 442
GlaI GCGC 1 cut(s) 214
GluI GCNGC 1 cut(s) 279
HapII CCGG 1 cut(s) 342
HhaI GCGC 1 cut(s) 215
Hin1II CATG 1 cut(s) 213
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 1 cut(s) 269
HpaII CCGG 1 cut(s) 342
HphI GGTGA 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 339, 371
Hpy188III TCNNGA 2 cut(s) 242, 377
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 4 cut(s) 120, 139, 284, 299
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 176
HpyF3I CTNAG 4 cut(s) 57, 282, 336, 361
HpySE526I ACGT 1 cut(s) 157
Hsp92II CATG 1 cut(s) 213
HspAI GCGC 1 cut(s) 213
Ksp22I TGATCA 1 cut(s) 426
Kzo9I GATC 5 cut(s) 8, 81, 300, 373, 426
LguI GCTCTTC 1 cut(s) 236
LpnPI CCDG 7 cut(s) 4, 45, 141, 255, 355, 390, 418
MaeI CTAG 2 cut(s) 417, 442
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 153
MalI GATC 5 cut(s) 10, 83, 302, 375, 428
MboI GATC 5 cut(s) 8, 81, 300, 373, 426
MboII GAAGA 3 cut(s) 47, 223, 278
MflI RGATCY 2 cut(s) 8, 373
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 2 cut(s) 164, 422
MnlI CCTC 3 cut(s) 101, 124, 401
MseI TTAA 1 cut(s) 141
MspI CCGG 1 cut(s) 342
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 167, 176
NdeII GATC 5 cut(s) 8, 81, 300, 373, 426
NlaIII CATG 1 cut(s) 213
NlaIV GGNNCC 3 cut(s) 23, 88, 355
NmuCI GTSAC 1 cut(s) 153
NspI RCATGY 1 cut(s) 213
PaeI GCATGC 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 236
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 99
PfeI GAWTC 1 cut(s) 269
PinAI ACCGGT 1 cut(s) 341
PkrI GCNGC 1 cut(s) 280
Ple19I CGATCG 1 cut(s) 303
PmaCI CACGTG 1 cut(s) 158
PmlI CACGTG 1 cut(s) 158
Ppu21I YACGTR 1 cut(s) 158
PspCI CACGTG 1 cut(s) 158
PspN4I GGNNCC 3 cut(s) 23, 88, 355
PspPI GGNCC 1 cut(s) 86
PsuI RGATCY 2 cut(s) 8, 373
PvuI CGATCG 1 cut(s) 303
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 5 cut(s) 8, 81, 300, 373, 426
Sau96I GGNCC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 77
SetI ASST 6 cut(s) 20, 112, 160, 362, 393, 415
SinI GGWCC 1 cut(s) 86
SphI GCATGC 1 cut(s) 213
Sse9I AATT 2 cut(s) 164, 422
SsiI CCGC 4 cut(s) 12, 48, 53, 278
SspMI CTAG 2 cut(s) 417, 442
TaiI ACGT 1 cut(s) 160
TaqI TCGA 3 cut(s) 93, 303, 315
TaqII GACCGA 1 cut(s) 74
TasI AATT 2 cut(s) 164, 422
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 1 cut(s) 153
Tsp45I GTSAC 1 cut(s) 153
TspRI CASTG 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 1 cut(s) 164
XceI RCATGY 1 cut(s) 213
XspI CTAG 2 cut(s) 417, 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.