MD07G1247700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015865
Physical Location & Seq
Forward (+)
31694330 .. 31695286
957 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1247700.v1.1.491

Sequence Viewer

Length: 450 bp
ATGCATAGATCGGCAAGCTGGAGCCGGGTGGCGGATGAGTACTTCATGCACTCAACTTCGTCGCCGTCAGCAGGGAAGGGGCCGTCAGGGCTGCGAGTGTCCGTGTCGTTTGATCAAGGCGGAGATCTGCCGATGTACGATCCTATAGCTGAGTTGGCCAAGAAGGAGAGGTCTCGCGTTAAGTTTGCTGAGAATGCTGTGCATGTCATCCCCTTTGTGCTTCTCTTTTGTGCTTTTGTTCTTTGGTTTTTCTCTAATCCAGATGTATATGTGAGGATTAAAACGGATCCAATAGCTGCAAGAATAGAAGGGCTGACGTTGGAGGGAGAGATTGAGAGTGATAGTGACGGTACTCAAACAGGCGCTCTACCCTTTGTGGACTTGGGACTAGATTTGGACCCAACAACAACAAAACAAACCAGAGATAGATTGAAGAGATTCAAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.61

Weight (kDa)

6.07

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015865)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07490 AT5G61630
fragaria_vesca FvH4_7g26830
malus_domestica MD07G1247700.v1.1
prunus_persica Prupe.2G271700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0373521
rosa_laevigata RLG00000026819
rosa_multiflora Rmu_co8371649.1_g000001
rosa_roxburghii Rroxscaffold_4G00284180
rosa_rugosa Rorug01G0377800
rosa_samantha Rh1AG387200 Rh1BG351600 Rh1CG364300 Rh1DG382000
rosa_wichuraiana Rw1G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 177
AciI CCGC 2 cut(s) 32, 120
AclWI GGATC 3 cut(s) 134, 281, 294
AcoI YGGCCR 1 cut(s) 156
AfaI GTAC 3 cut(s) 41, 137, 352
AfiI CCNNNNNNNGG 2 cut(s) 31, 71
AgsI TTSAA 2 cut(s) 433, 442
AluBI AGCT 3 cut(s) 18, 149, 296
AluI AGCT 3 cut(s) 18, 149, 296
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 3 cut(s) 134, 281, 294
AoxI GGCC 2 cut(s) 80, 156
ApeKI GCWGC 2 cut(s) 91, 296
Asp700I GAANNNNTTC 1 cut(s) 437
AspLEI GCGC 1 cut(s) 365
AspS9I GGNCC 2 cut(s) 80, 397
AsuC2I CCSGG 1 cut(s) 26
AvaII GGWCC 1 cut(s) 397
BalI TGGCCA 1 cut(s) 158
BamHI GGATCC 1 cut(s) 286
BbvI GCAGC 2 cut(s) 78, 283
BceAI ACGGC 2 cut(s) 49, 67
BclI TGATCA 1 cut(s) 112
BcnI CCSGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 177
BfaI CTAG 1 cut(s) 389
BfmI CTRYAG 1 cut(s) 144
BfoI RGCGCY 1 cut(s) 366
BglI GCCNNNNNGGC 1 cut(s) 88
BglII AGATCT 1 cut(s) 124
BisI GCNGC 2 cut(s) 92, 297
BlsI GCNGC 2 cut(s) 93, 298
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 397
BmgT120I GGNCC 2 cut(s) 80, 397
BmiI GGNNCC 4 cut(s) 23, 81, 288, 399
BmrFI CCNGG 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 177
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 71
BseGI GGATG 2 cut(s) 40, 207
BseLI CCNNNNNNNGG 2 cut(s) 31, 71
BseMII CTCAG 2 cut(s) 141, 180
BseXI GCAGC 2 cut(s) 78, 283
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 82, 158
BsiSI CCGG 1 cut(s) 25
BslFI GGGAC 1 cut(s) 399
BslI CCNNNNNNNGG 2 cut(s) 31, 71
BsmAI GTCTC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 399
BsmI GAATGC 1 cut(s) 199
BsnI GGCC 2 cut(s) 82, 158
Bso31I GGTCTC 1 cut(s) 177
Bsp143I GATC 5 cut(s) 8, 112, 124, 139, 286
BspACI CCGC 2 cut(s) 32, 120
BspANI GGCC 2 cut(s) 82, 158
BspCNI CTCAG 2 cut(s) 142, 181
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 4 cut(s) 23, 81, 288, 399
BspPI GGATC 3 cut(s) 134, 281, 294
BspTNI GGTCTC 1 cut(s) 177
BssMI GATC 5 cut(s) 8, 112, 124, 139, 286
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 2 cut(s) 150, 189
BstF5I GGATG 2 cut(s) 40, 207
BstFNI CGCG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 366
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 5 cut(s) 11, 115, 127, 142, 289
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 5 cut(s) 8, 112, 124, 139, 286
BstMWI GCNNNNNNNGC 3 cut(s) 88, 155, 194
BstNSI RCATGY 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 144
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 78, 283
BstX2I RGATCY 2 cut(s) 124, 286
BstYI RGATCY 2 cut(s) 124, 286
BsuRI GGCC 2 cut(s) 82, 158
BtsCI GGATG 2 cut(s) 40, 207
Cac8I GCNNGC 1 cut(s) 16
CfoI GCGC 1 cut(s) 365
Cfr13I GGNCC 2 cut(s) 80, 397
Csp6I GTAC 3 cut(s) 40, 136, 351
CviAII CATG 2 cut(s) 46, 203
CviJI RGCY 8 cut(s) 18, 24, 82, 91, 149, 158, 296, 313
CviKI_1 RGCY 8 cut(s) 18, 24, 82, 91, 149, 158, 296, 313
CviQI GTAC 3 cut(s) 40, 136, 351
DdeI CTNAG 2 cut(s) 150, 189
DpnI GATC 5 cut(s) 10, 114, 126, 141, 288
DpnII GATC 5 cut(s) 8, 112, 124, 139, 286
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
EciI GGCGGA 2 cut(s) 47, 135
Eco31I GGTCTC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 397
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 49, 206
FaiI YATR 6 cut(s) 6, 47, 146, 204, 268, 270
FaqI GGGAC 1 cut(s) 399
FatI CATG 2 cut(s) 45, 202
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 92, 297
FokI GGATG 2 cut(s) 47, 194
Fsp4HI GCNGC 2 cut(s) 92, 297
FspBI CTAG 1 cut(s) 389
GlaI GCGC 1 cut(s) 364
GluI GCNGC 2 cut(s) 92, 297
GsuI CTGGAG 1 cut(s) 40
HaeII RGCGCY 1 cut(s) 366
HaeIII GGCC 2 cut(s) 82, 158
HapII CCGG 1 cut(s) 25
HhaI GCGC 1 cut(s) 365
Hin1II CATG 2 cut(s) 49, 206
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HinfI GANTC 1 cut(s) 438
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 379
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 1 cut(s) 379
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 3 cut(s) 70, 157, 302
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 4 cut(s) 4, 49, 202, 299
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 155, 194
HpyF3I CTNAG 2 cut(s) 150, 189
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 2 cut(s) 49, 206
HspAI GCGC 1 cut(s) 363
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 5 cut(s) 8, 112, 124, 139, 286
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 7 cut(s) 4, 38, 57, 72, 273, 345, 433
Lsp1109I GCAGC 2 cut(s) 78, 283
MaeI CTAG 1 cut(s) 389
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 1 cut(s) 344
MalI GATC 5 cut(s) 10, 114, 126, 141, 288
MboI GATC 5 cut(s) 8, 112, 124, 139, 286
MboII GAAGA 1 cut(s) 445
MflI RGATCY 2 cut(s) 124, 286
MlsI TGGCCA 1 cut(s) 158
MluNI TGGCCA 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 3 cut(s) 162, 267, 316
Mox20I TGGCCA 1 cut(s) 158
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 437
MscI TGGCCA 1 cut(s) 158
MseI TTAA 3 cut(s) 180, 279, 448
Msp20I TGGCCA 1 cut(s) 158
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 199
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 88, 155, 194
NciI CCSGG 1 cut(s) 26
NdeII GATC 5 cut(s) 8, 112, 124, 139, 286
NlaIII CATG 2 cut(s) 49, 206
NlaIV GGNNCC 4 cut(s) 23, 81, 288, 399
NmuCI GTSAC 1 cut(s) 344
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 206
PctI GAATGC 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 438
PkrI GCNGC 2 cut(s) 93, 298
PspN4I GGNNCC 4 cut(s) 23, 81, 288, 399
PspPI GGNCC 2 cut(s) 80, 397
PsuI RGATCY 2 cut(s) 124, 286
RsaI GTAC 3 cut(s) 41, 137, 352
RsaNI GTAC 3 cut(s) 40, 136, 351
SaqAI TTAA 3 cut(s) 180, 279, 448
SatI GCNGC 2 cut(s) 92, 297
Sau3AI GATC 5 cut(s) 8, 112, 124, 139, 286
Sau96I GGNCC 2 cut(s) 80, 397
ScaI AGTACT 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 26
SetI ASST 5 cut(s) 20, 151, 173, 298, 320
SfcI CTRYAG 1 cut(s) 144
SinI GGWCC 1 cut(s) 397
SsiI CCGC 2 cut(s) 32, 120
SspMI CTAG 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 350
TaiI ACGT 1 cut(s) 320
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 1 cut(s) 438
Tru1I TTAA 3 cut(s) 180, 279, 448
Tru9I TTAA 3 cut(s) 180, 279, 448
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 2 cut(s) 91, 296
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 34
TspGWI ACGGA 2 cut(s) 91, 299
VpaK11BI GGWCC 1 cut(s) 397
XceI RCATGY 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 1 cut(s) 389
ZrmI AGTACT 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.