FvH4_7g26830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015865
Physical Location & Seq
Forward (+)
20180031 .. 20180992
962 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26830.t1

Sequence Viewer

Length: 420 bp
ATGCATAGATCGGCAAGTTGGAGCAGGGCGGATGAGTACTATGCGTCGGCGGCAAAGGGTCCGCCGGGGCTGCGAATGTCAGTGTCGTTTTTCCAAGGGAGTGACAGTCAGCTGCCGGTTTATGATCCACCCATAGCCGAGTTGGCCAAGAAGGAAAAGGCTCGAGTCAAGTTTGCCGAGAATGCTGTCCACATTATCCCATTTGTGCTTCTTCTATGCGCTTTCATTCTTTGGTTTTTCTCTAATCCAACAGAAGTAGGTATGAGGATGAAGGATCCAATAGCAGCAAAGAGTATTGAAGGACTGACATTAGAGGGGGAGATTGAGAACGATAGCGATGGCACTCAAACAGGAGTTCTACCGGTTGTCGATTTGGGACTAGACGTCGACCCAACAAAGCAAACCAAGTATAAAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.36

Weight (kDa)

5.68

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015865)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07490 AT5G61630
fragaria_vesca FvH4_7g26830
malus_domestica MD07G1247700.v1.1
prunus_persica Prupe.2G271700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0373521
rosa_laevigata RLG00000026819
rosa_multiflora Rmu_co8371649.1_g000001
rosa_roxburghii Rroxscaffold_4G00284180
rosa_rugosa Rorug01G0377800
rosa_samantha Rh1AG387200 Rh1BG351600 Rh1CG364300 Rh1DG382000
rosa_wichuraiana Rw1G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 387
AccI GTMKAC 1 cut(s) 387
AciI CCGC 3 cut(s) 29, 50, 62
AclWI GGATC 3 cut(s) 119, 269, 282
AcoI YGGCCR 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 384
AfaI GTAC 1 cut(s) 38
AgeI ACCGGT 1 cut(s) 361
AgsI TTSAA 1 cut(s) 299
AhdI GACNNNNNGTC 1 cut(s) 383
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AlwI GGATC 3 cut(s) 119, 269, 282
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 3 cut(s) 70, 112, 284
AsiGI ACCGGT 1 cut(s) 361
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 59
AsuC2I CCSGG 1 cut(s) 66
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 59
BalI TGGCCA 1 cut(s) 146
BamHI GGATCC 1 cut(s) 274
BbvI GCAGC 3 cut(s) 57, 99, 296
BccI CCATC 1 cut(s) 332
BcnI CCSGG 1 cut(s) 66
BfaI CTAG 1 cut(s) 380
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 4 cut(s) 51, 71, 113, 285
BlsI GCNGC 4 cut(s) 52, 72, 114, 286
BmcAI AGTACT 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 59
BmeRI GACNNNNNGTC 1 cut(s) 383
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 2 cut(s) 60, 276
BmrFI CCNGG 1 cut(s) 66
BpuMI CCSGG 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 384
BsaJI CCNNGG 2 cut(s) 65, 94
BsaWI WCCGGW 1 cut(s) 361
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bse118I RCCGGY 2 cut(s) 115, 361
BseDI CCNNGG 2 cut(s) 65, 94
BseGI GGATG 2 cut(s) 37, 273
BseXI GCAGC 3 cut(s) 57, 99, 296
BshFI GGCC 1 cut(s) 146
BshTI ACCGGT 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 3 cut(s) 65, 116, 362
BslFI GGGAC 1 cut(s) 390
BsmFI GGGAC 1 cut(s) 390
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 162
Bsp143I GATC 3 cut(s) 8, 124, 274
BspACI CCGC 3 cut(s) 29, 50, 62
BspANI GGCC 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 60, 276
BspPI GGATC 3 cut(s) 119, 269, 282
BsrFI RCCGGY 2 cut(s) 115, 361
BssAI RCCGGY 2 cut(s) 115, 361
BssECI CCNNGG 2 cut(s) 65, 94
BssMI GATC 3 cut(s) 8, 124, 274
BssNI GRCGYC 1 cut(s) 384
BssT1I CCWWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 384
BstF5I GGATG 2 cut(s) 37, 273
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 3 cut(s) 11, 127, 277
BstMBI GATC 3 cut(s) 8, 124, 274
BstMWI GCNNNNNNNGC 4 cut(s) 50, 70, 143, 182
BstSCI CCNGG 1 cut(s) 64
BstV1I GCAGC 3 cut(s) 57, 99, 296
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 1 cut(s) 146
BtgZI GCGATG 1 cut(s) 351
BtsCI GGATG 2 cut(s) 37, 273
BtsIMutI CAGTG 1 cut(s) 87
CfoI GCGC 1 cut(s) 221
Cfr10I RCCGGY 2 cut(s) 115, 361
Cfr13I GGNCC 1 cut(s) 59
CseI GACGC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 37
CspAI ACCGGT 1 cut(s) 361
CviJI RGCY 5 cut(s) 70, 112, 137, 146, 161
CviKI_1 RGCY 5 cut(s) 70, 112, 137, 146, 161
CviQI GTAC 1 cut(s) 37
DpnI GATC 3 cut(s) 10, 126, 276
DpnII GATC 3 cut(s) 8, 124, 274
DriI GACNNNNNGTC 1 cut(s) 383
EaeI YGGCCR 1 cut(s) 144
Eam1105I GACNNNNNGTC 1 cut(s) 383
EciI GGCGGA 2 cut(s) 44, 51
Eco130I CCWWGG 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 94
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 94
FaiI YATR 7 cut(s) 6, 42, 123, 134, 217, 263, 411
FaqI GGGAC 1 cut(s) 390
FblI GTMKAC 1 cut(s) 387
Fnu4HI GCNGC 4 cut(s) 51, 71, 113, 285
FokI GGATG 2 cut(s) 44, 280
Fsp4HI GCNGC 4 cut(s) 51, 71, 113, 285
FspBI CTAG 1 cut(s) 380
GlaI GCGC 1 cut(s) 220
GluI GCNGC 4 cut(s) 51, 71, 113, 285
HaeIII GGCC 1 cut(s) 146
HapII CCGG 3 cut(s) 65, 116, 362
HgaI GACGC 1 cut(s) 33
HhaI GCGC 1 cut(s) 221
Hin1I GRCGYC 1 cut(s) 384
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 1 cut(s) 165
HpaII CCGG 3 cut(s) 65, 116, 362
Hpy166II GTNNAC 2 cut(s) 190, 388
Hpy8I GTNNAC 2 cut(s) 190, 388
Hpy99I CGWCG 2 cut(s) 49, 389
HpyAV CCTTC 3 cut(s) 145, 265, 293
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 70, 143, 182
HpySE526I ACGT 1 cut(s) 384
Hsp92I GRCGYC 1 cut(s) 384
HspAI GCGC 1 cut(s) 219
Kzo9I GATC 3 cut(s) 8, 124, 274
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 5 cut(s) 10, 78, 129, 336, 375
Lsp1109I GCAGC 3 cut(s) 57, 99, 296
MaeI CTAG 1 cut(s) 380
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 101
MalI GATC 3 cut(s) 10, 126, 276
MboI GATC 3 cut(s) 8, 124, 274
MboII GAAGA 1 cut(s) 203
MflI RGATCY 1 cut(s) 274
MlsI TGGCCA 1 cut(s) 146
MluNI TGGCCA 1 cut(s) 146
MlyI GAGTC 1 cut(s) 174
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 2 cut(s) 258, 307
Mox20I TGGCCA 1 cut(s) 146
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 146
Msp20I TGGCCA 1 cut(s) 146
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 3 cut(s) 65, 116, 362
MspR9I CCNGG 1 cut(s) 66
Mva1269I GAATGC 1 cut(s) 187
MwoI GCNNNNNNNGC 4 cut(s) 50, 70, 143, 182
NciI CCSGG 1 cut(s) 66
NdeII GATC 3 cut(s) 8, 124, 274
NlaIV GGNNCC 2 cut(s) 60, 276
NmeAIII GCCGAG 2 cut(s) 163, 202
NmuCI GTSAC 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 162
PctI GAATGC 1 cut(s) 187
PinAI ACCGGT 1 cut(s) 361
PkrI GCNGC 4 cut(s) 52, 72, 114, 286
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PspN4I GGNNCC 2 cut(s) 60, 276
PspPI GGNCC 1 cut(s) 59
PspXI VCTCGAGB 1 cut(s) 162
PsuI RGATCY 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 112
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SalI GTCGAC 1 cut(s) 386
SatI GCNGC 4 cut(s) 51, 71, 113, 285
Sau3AI GATC 3 cut(s) 8, 124, 274
Sau96I GGNCC 1 cut(s) 59
ScaI AGTACT 1 cut(s) 38
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 66
SetI ASST 3 cut(s) 114, 262, 387
Sfr274I CTCGAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 59
SlaI CTCGAG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
SsiI CCGC 3 cut(s) 29, 50, 62
SspMI CTAG 1 cut(s) 380
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 107
TaiI ACGT 1 cut(s) 387
TaqI TCGA 3 cut(s) 163, 369, 387
TatI WGTACW 1 cut(s) 36
TauI GCSGC 1 cut(s) 53
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 3 cut(s) 70, 112, 284
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 2 cut(s) 214, 284
TspRI CASTG 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 59
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XhoI CTCGAG 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 387
XspI CTAG 1 cut(s) 380
ZraI GACGTC 1 cut(s) 385
ZrmI AGTACT 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.