Rmu_co8371649.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8371649.1
OG0015865
Physical Location & Seq
Reverse (-)
1 .. 376
376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8371649.1_g000001.1.cds

Sequence Viewer

Length: 259 bp
atgcatagatcggcaagttggaccagggcggatgagtactatgcatcgtcaccgtcgccctcaaagggcccgtcggggctgcgaatgtcggtgtcattcttccaagggagtgatagtcagctgccgatttatgatccgcccatagccgagttggccaagaaggaaaaggctcgcgtcaagtttgccgagaatgctgtccatgttatcccctttgtgcttcttctatgcgctttcattctttggtttttctctaatccag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.64

Weight (kDa)

8.89

Isoelectric Point (pI)

66.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015865)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07490 AT5G61630
fragaria_vesca FvH4_7g26830
malus_domestica MD07G1247700.v1.1
prunus_persica Prupe.2G271700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0373521
rosa_laevigata RLG00000026819
rosa_multiflora Rmu_co8371649.1_g000001
rosa_roxburghii Rroxscaffold_4G00284180
rosa_rugosa Rorug01G0377800
rosa_samantha Rh1AG387200 Rh1BG351600 Rh1CG364300 Rh1DG382000
rosa_wichuraiana Rw1G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 174
AciI CCGC 2 cut(s) 29, 137
AclWI GGATC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 153
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 65
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
AlwI GGATC 1 cut(s) 128
AoxI GGCC 2 cut(s) 67, 153
ApaI GGGCCC 1 cut(s) 71
ApeKI GCWGC 2 cut(s) 79, 121
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 3 cut(s) 21, 67, 68
AsuHPI GGTGA 1 cut(s) 42
AvaII GGWCC 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 71
BalI TGGCCA 1 cut(s) 155
BanII GRGCYC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 66, 108
BciT130I CCWGG 1 cut(s) 25
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 2 cut(s) 80, 122
BlsI GCNGC 2 cut(s) 81, 123
BmcAI AGTACT 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 25
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 3 cut(s) 21, 67, 68
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 24, 103
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 24, 103
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 71
BseXI GCAGC 2 cut(s) 66, 108
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 69, 155
BslI CCNNNNNNNGG 1 cut(s) 65
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 2 cut(s) 69, 155
Bsp120I GGGCCC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 8, 133
BspACI CCGC 2 cut(s) 29, 137
BspANI GGCC 2 cut(s) 69, 155
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 24, 103
BssMI GATC 2 cut(s) 8, 133
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 172
BstF5I GGATG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 174
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 2 cut(s) 11, 136
BstMBI GATC 2 cut(s) 8, 133
BstMWI GCNNNNNNNGC 2 cut(s) 152, 191
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 23
BstSLI GKGCMC 1 cut(s) 71
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 66, 108
BsuRI GGCC 2 cut(s) 69, 155
BtsCI GGATG 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 172
CfoI GCGC 1 cut(s) 230
Cfr13I GGNCC 3 cut(s) 21, 67, 68
CseI GACGC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 37
CviAII CATG 1 cut(s) 200
CviJI RGCY 6 cut(s) 69, 79, 121, 146, 155, 170
CviKI_1 RGCY 6 cut(s) 69, 79, 121, 146, 155, 170
CviQI GTAC 1 cut(s) 37
DpnI GATC 2 cut(s) 10, 135
DpnII GATC 2 cut(s) 8, 133
EaeI YGGCCR 1 cut(s) 153
EciI GGCGGA 2 cut(s) 44, 126
Eco130I CCWWGG 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 103
EcoT22I ATGCAT 2 cut(s) 6, 46
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 203
FaiI YATR 6 cut(s) 6, 42, 132, 143, 201, 226
FatI CATG 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 80, 122
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 2 cut(s) 80, 122
GlaI GCGC 1 cut(s) 229
GluI GCNGC 2 cut(s) 80, 122
HaeIII GGCC 2 cut(s) 69, 155
HgaI GACGC 1 cut(s) 163
HhaI GCGC 1 cut(s) 230
Hin1II CATG 1 cut(s) 203
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HphI GGTGA 1 cut(s) 42
Hpy99I CGWCG 2 cut(s) 58, 76
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4V TGCA 2 cut(s) 4, 44
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 191
Hsp92II CATG 1 cut(s) 203
HspAI GCGC 1 cut(s) 228
Kzo9I GATC 2 cut(s) 8, 133
LpnPI CCDG 2 cut(s) 10, 37
Lsp1109I GCAGC 2 cut(s) 66, 108
LweI GCATC 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 48
MalI GATC 2 cut(s) 10, 135
MboI GATC 2 cut(s) 8, 133
MboII GAAGA 2 cut(s) 91, 212
MhlI GDGCHC 1 cut(s) 71
MlsI TGGCCA 1 cut(s) 155
MluNI TGGCCA 1 cut(s) 155
MnlI CCTC 1 cut(s) 70
Mox20I TGGCCA 1 cut(s) 155
Mph1103I ATGCAT 2 cut(s) 6, 46
MscI TGGCCA 1 cut(s) 155
Msp20I TGGCCA 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 121
MspR9I CCNGG 1 cut(s) 25
Mva1269I GAATGC 1 cut(s) 196
MvaI CCWGG 1 cut(s) 25
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 152, 191
NdeII GATC 2 cut(s) 8, 133
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 1 cut(s) 69
NmeAIII GCCGAG 2 cut(s) 172, 211
NmuCI GTSAC 1 cut(s) 48
NsiI ATGCAT 2 cut(s) 6, 46
PctI GAATGC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 81, 123
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 69
PspOMI GGGCCC 1 cut(s) 67
PspPI GGNCC 3 cut(s) 21, 67, 68
PvuII CAGCTG 1 cut(s) 121
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SatI GCNGC 2 cut(s) 80, 122
Sau3AI GATC 2 cut(s) 8, 133
Sau96I GGNCC 3 cut(s) 21, 67, 68
ScaI AGTACT 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 1 cut(s) 71
SetI ASST 1 cut(s) 123
SfaNI GCATC 1 cut(s) 53
SinI GGWCC 1 cut(s) 21
SsiI CCGC 2 cut(s) 29, 137
StyD4I CCNGG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 54
TatI WGTACW 1 cut(s) 36
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 2 cut(s) 79, 121
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
ZrmI AGTACT 1 cut(s) 38
Zsp2I ATGCAT 2 cut(s) 6, 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.