Rroxscaffold_4G00284180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015865
Physical Location & Seq
Reverse (-)
5859492 .. 5860243
752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00284180.1

Sequence Viewer

Length: 429 bp
ATGCATAGATCGGCAAGTTGGACCAGGGCGGATGAGTACTATGCGTCGTCACCGTCACCAGCAAAGGGCCCGTCGGGGCTGCGAATGTCGGTGTCATTCTTCCAAGGGAGTGATAGTCAGCTGCCGATTTATGATCCGCCCATAGCCGAGTTGGCCAAGAAGGAAAAGGCTCGCGTCAAGTTTGCCGAGAATGCTGTCCATGTTATCCCCTTTGTGCTTCTTCTATGCGCTTTCATTCTTTGGTTTTTCTCTAATCCAGCAGATGTAGATGTGAGGATGAAGGATCCAATAGCAGCAAAAAGTATTGAAGGACTGACATTAGAGGGGGAGATTGAGAACGATAGTGATGGCACTCAAACAGGAGCTCTACCCATTGTCGATTTGGGACTAGACACCGATCCAACAAAGCAAACCAAATATAAAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.63

Weight (kDa)

5.36

Isoelectric Point (pI)

52.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015865)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07490 AT5G61630
fragaria_vesca FvH4_7g26830
malus_domestica MD07G1247700.v1.1
prunus_persica Prupe.2G271700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0373521
rosa_laevigata RLG00000026819
rosa_multiflora Rmu_co8371649.1_g000001
rosa_roxburghii Rroxscaffold_4G00284180
rosa_rugosa Rorug01G0377800
rosa_samantha Rh1AG387200 Rh1BG351600 Rh1CG364300 Rh1DG382000
rosa_wichuraiana Rw1G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 174
AciI CCGC 2 cut(s) 29, 137
AclWI GGATC 4 cut(s) 128, 278, 291, 392
AcoI YGGCCR 1 cut(s) 153
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 65
AgsI TTSAA 1 cut(s) 308
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 2 cut(s) 121, 365
AluI AGCT 2 cut(s) 121, 365
Alw21I GWGCWC 1 cut(s) 367
AlwI GGATC 4 cut(s) 128, 278, 291, 392
AoxI GGCC 2 cut(s) 67, 153
ApaI GGGCCC 1 cut(s) 71
ApeKI GCWGC 3 cut(s) 79, 121, 293
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 3 cut(s) 21, 67, 68
AsuHPI GGTGA 2 cut(s) 42, 48
AvaII GGWCC 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 71
BalI TGGCCA 1 cut(s) 155
BamHI GGATCC 1 cut(s) 283
BanII GRGCYC 2 cut(s) 71, 367
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 3 cut(s) 66, 108, 305
BccI CCATC 1 cut(s) 341
BciT130I CCWGG 1 cut(s) 25
BfaI CTAG 1 cut(s) 389
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 3 cut(s) 80, 122, 294
BlsI GCNGC 3 cut(s) 81, 123, 295
BmcAI AGTACT 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 25
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 3 cut(s) 21, 67, 68
BmiI GGNNCC 2 cut(s) 69, 285
BmrFI CCNGG 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 24, 103
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 24, 103
BseGI GGATG 2 cut(s) 37, 282
BseLI CCNNNNNNNGG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 71
BseXI GCAGC 3 cut(s) 66, 108, 305
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 69, 155
BsiHKAI GWGCWC 1 cut(s) 367
BslFI GGGAC 1 cut(s) 399
BslI CCNNNNNNNGG 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 399
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 2 cut(s) 69, 155
Bsp120I GGGCCC 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 71, 367
Bsp143I GATC 4 cut(s) 8, 133, 283, 397
BspACI CCGC 2 cut(s) 29, 137
BspANI GGCC 2 cut(s) 69, 155
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 69, 285
BspPI GGATC 4 cut(s) 128, 278, 291, 392
BssECI CCNNGG 2 cut(s) 24, 103
BssMI GATC 4 cut(s) 8, 133, 283, 397
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 172
BstF5I GGATG 2 cut(s) 37, 282
BstFNI CGCG 1 cut(s) 174
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 4 cut(s) 11, 136, 286, 400
BstMBI GATC 4 cut(s) 8, 133, 283, 397
BstMWI GCNNNNNNNGC 2 cut(s) 152, 191
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 23
BstSLI GKGCMC 1 cut(s) 71
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 3 cut(s) 66, 108, 305
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 2 cut(s) 69, 155
BtsCI GGATG 2 cut(s) 37, 282
Cac8I GCNNGC 1 cut(s) 172
CfoI GCGC 1 cut(s) 230
Cfr13I GGNCC 3 cut(s) 21, 67, 68
CseI GACGC 2 cut(s) 33, 163
Csp6I GTAC 1 cut(s) 37
CviAII CATG 1 cut(s) 200
CviJI RGCY 7 cut(s) 69, 79, 121, 146, 155, 170, 365
CviKI_1 RGCY 7 cut(s) 69, 79, 121, 146, 155, 170, 365
CviQI GTAC 1 cut(s) 37
DpnI GATC 4 cut(s) 10, 135, 285, 399
DpnII GATC 4 cut(s) 8, 133, 283, 397
EaeI YGGCCR 1 cut(s) 153
EciI GGCGGA 2 cut(s) 44, 126
Ecl136II GAGCTC 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 103
Eco24I GRGCYC 2 cut(s) 71, 367
Eco47I GGWCC 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 365
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 71, 367
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 203
FaiI YATR 7 cut(s) 6, 42, 132, 143, 201, 226, 420
FaqI GGGAC 1 cut(s) 399
FatI CATG 1 cut(s) 199
Fnu4HI GCNGC 3 cut(s) 80, 122, 294
FokI GGATG 2 cut(s) 44, 289
FriOI GRGCYC 2 cut(s) 71, 367
Fsp4HI GCNGC 3 cut(s) 80, 122, 294
FspBI CTAG 1 cut(s) 389
GlaI GCGC 1 cut(s) 229
GluI GCNGC 3 cut(s) 80, 122, 294
HaeIII GGCC 2 cut(s) 69, 155
HgaI GACGC 2 cut(s) 33, 163
HhaI GCGC 1 cut(s) 230
Hin1II CATG 1 cut(s) 203
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HphI GGTGA 2 cut(s) 42, 48
Hpy99I CGWCG 2 cut(s) 49, 76
HpyAV CCTTC 3 cut(s) 154, 274, 302
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 191
Hsp92II CATG 1 cut(s) 203
HspAI GCGC 1 cut(s) 228
Kzo9I GATC 4 cut(s) 8, 133, 283, 397
LmnI GCTCC 1 cut(s) 362
LpnPI CCDG 5 cut(s) 10, 37, 72, 270, 345
Lsp1109I GCAGC 3 cut(s) 66, 108, 305
MaeI CTAG 1 cut(s) 389
MaeIII GTNAC 2 cut(s) 48, 54
MalI GATC 4 cut(s) 10, 135, 285, 399
MboI GATC 4 cut(s) 8, 133, 283, 397
MboII GAAGA 2 cut(s) 91, 212
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 2 cut(s) 71, 367
MlsI TGGCCA 1 cut(s) 155
MluNI TGGCCA 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 2 cut(s) 267, 316
Mox20I TGGCCA 1 cut(s) 155
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 155
Msp20I TGGCCA 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 121
MspR9I CCNGG 1 cut(s) 25
Mva1269I GAATGC 1 cut(s) 196
MvaI CCWGG 1 cut(s) 25
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 152, 191
NdeII GATC 4 cut(s) 8, 133, 283, 397
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 2 cut(s) 69, 285
NmeAIII GCCGAG 2 cut(s) 172, 211
NmuCI GTSAC 2 cut(s) 48, 54
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 196
PkrI GCNGC 3 cut(s) 81, 123, 295
Psp124BI GAGCTC 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 69, 285
PspOMI GGGCCC 1 cut(s) 67
PspPI GGNCC 3 cut(s) 21, 67, 68
PsuI RGATCY 1 cut(s) 283
PvuII CAGCTG 1 cut(s) 121
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SacI GAGCTC 1 cut(s) 367
SatI GCNGC 3 cut(s) 80, 122, 294
Sau3AI GATC 4 cut(s) 8, 133, 283, 397
Sau96I GGNCC 3 cut(s) 21, 67, 68
ScaI AGTACT 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 2 cut(s) 71, 367
SetI ASST 2 cut(s) 123, 367
SinI GGWCC 1 cut(s) 21
SsiI CCGC 2 cut(s) 29, 137
SspMI CTAG 1 cut(s) 389
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 54
TaqI TCGA 1 cut(s) 378
TatI WGTACW 1 cut(s) 36
TseFI GTSAC 2 cut(s) 48, 54
TseI GCWGC 3 cut(s) 79, 121, 293
Tsp45I GTSAC 2 cut(s) 48, 54
TspDTI ATGAA 2 cut(s) 223, 293
VpaK11BI GGWCC 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 2 cut(s) 148, 379
XspI CTAG 1 cut(s) 389
ZrmI AGTACT 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.