Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011239

Physical Location & Seq

Genomic Coordinates Forward (+)

2580422 .. 2582817

Gene Structure 2396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCGAAATCAGTGTCGACGGCGGCTTCCTCGCTTGTGCAAAACCTTAGGCGGTACATCAAGAAGCCATGGCAGATCACCGGACCTTGCGCTCACCCAGAATACCTCGAAGCTGTTCCAAAGGCGACGGAGTATCGTCTCCGATGCCCCGCTACGATTGATGAAGAAGCAATCGTGCCTTCCTCGGATCCAGAGACCGTATACAACATCGTATACCACGGCAGAGATCAGCGCAGAAACCGCCCACCGATCCGGCGATACGTATTGACGAAGGACAACGTGGTTCAGATGATGAACGAGAAGAAGAGTTTTGACGTCTCGGACTTCCCTAAGGTTTACTTGACCACCACAGTCGAGGAGGATTTGGATACGCGTGGTGGAGGCTACGAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

15.04

Weight (kDa)

8.52

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08060
fragaria_vesca	FvH4_5g13720 FvH4_5g13720 FvH4_5g13720 FvH4_5g13720
malus_domestica	MD06G1226100.v1.1 MD14G1213000.v1.1
prunus_persica	Prupe.5G206300_v2.0.a1
pyrus_communis	pycom14g17660
rosa_chinensis	RchiOBHm_Chr7g0183221
rosa_laevigata	RLG00000005064
rosa_multiflora	Rmu_sc0006717.1_g000001 Rmu_ssc0000111.1_g000029
rosa_rugosa	Rorug06G0455300
rosa_samantha	Rh7AG057300 Rh7BG057200 Rh7CG058400 Rh7CG058800 Rh7DG057000
rosa_wichuraiana	Rw7G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	318
AccI	GTMKAC	3 cut(s)	17, 201, 213
AccII	CGCG	1 cut(s)	373
AciI	CCGC	4 cut(s)	23, 52, 150, 241
AclWI	GGATC	3 cut(s)	182, 195, 244
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	1 cut(s)	56
AflIII	ACRYGT	1 cut(s)	371
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
Alw26I	GTCTC	3 cut(s)	143, 188, 322
AlwI	GGATC	3 cut(s)	182, 195, 244
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	114
AspLEI	GCGC	2 cut(s)	92, 234
AspS9I	GGNCC	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	70, 86
AvaII	GGWCC	1 cut(s)	83
AxyI	CCTNAGG	2 cut(s)	47, 330
BamHI	GGATCC	1 cut(s)	187
BceAI	ACGGC	2 cut(s)	36, 235
BciVI	GTATCC	1 cut(s)	361
BcoDI	GTCTC	3 cut(s)	143, 188, 322
BfuI	GTATCC	1 cut(s)	361
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	189
BmsI	GCATC	1 cut(s)	134
BsaAI	YACGTR	1 cut(s)	262
BsaHI	GRCGYC	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	3 cut(s)	68, 183, 217
BsaWI	WCCGGW	1 cut(s)	80
Bse21I	CCTNAGG	2 cut(s)	47, 330
BseDI	CCNNGG	3 cut(s)	68, 183, 217
BseRI	GAGGAG	1 cut(s)	371
Bsh1236I	CGCG	1 cut(s)	373
BsiSI	CCGG	2 cut(s)	81, 253
BsmAI	GTCTC	3 cut(s)	143, 188, 322
BsmBI	CGTCTC	2 cut(s)	143, 322
Bso31I	GGTCTC	1 cut(s)	188
Bsp143I	GATC	4 cut(s)	75, 187, 226, 249
Bsp19I	CCATGG	1 cut(s)	68
BspACI	CCGC	4 cut(s)	23, 52, 150, 241
BspFNI	CGCG	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	3 cut(s)	182, 195, 244
BspTNI	GGTCTC	1 cut(s)	188
BssECI	CCNNGG	3 cut(s)	68, 183, 217
BssMI	GATC	4 cut(s)	75, 187, 226, 249
BssNAI	GTATAC	2 cut(s)	202, 214
BssNI	GRCGYC	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	68
Bst1107I	GTATAC	2 cut(s)	202, 214
Bst4CI	ACNGT	2 cut(s)	199, 352
Bst6I	CTCTTC	1 cut(s)	299
BstACI	GRCGYC	1 cut(s)	315
BstBAI	YACGTR	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	47, 330
BstDSI	CCRYGG	2 cut(s)	68, 217
BstFNI	CGCG	1 cut(s)	373
BstHHI	GCGC	2 cut(s)	92, 234
BstKTI	GATC	4 cut(s)	78, 190, 229, 252
BstMAI	GTCTC	3 cut(s)	143, 188, 322
BstMBI	GATC	4 cut(s)	75, 187, 226, 249
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstSNI	TACGTA	1 cut(s)	262
BstUI	CGCG	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BstZ17I	GTATAC	2 cut(s)	202, 214
Bsu36I	CCTNAGG	2 cut(s)	47, 330
BsuI	GTATCC	1 cut(s)	361
BtgI	CCRYGG	2 cut(s)	68, 217
BtsIMutI	CAGTG	1 cut(s)	18
CfoI	GCGC	2 cut(s)	92, 234
Cfr13I	GGNCC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	1 cut(s)	69
CviJI	RGCY	4 cut(s)	26, 67, 113, 384
CviKI_1	RGCY	4 cut(s)	26, 67, 113, 384
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	2 cut(s)	47, 330
DpnI	GATC	4 cut(s)	77, 189, 228, 251
DpnII	GATC	4 cut(s)	75, 187, 226, 249
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco105I	TACGTA	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	83
Eco81I	CCTNAGG	2 cut(s)	47, 330
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
Esp3I	CGTCTC	2 cut(s)	143, 322
FaeI	CATG	1 cut(s)	72
FaiI	YATR	3 cut(s)	70, 202, 214
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FatI	CATG	1 cut(s)	68
FauI	CCCGC	1 cut(s)	157
FblI	GTMKAC	3 cut(s)	17, 201, 213
Fnu4HI	GCNGC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	24
GlaI	GCGC	2 cut(s)	91, 233
GluI	GCNGC	1 cut(s)	24
HapII	CCGG	2 cut(s)	81, 253
HhaI	GCGC	2 cut(s)	92, 234
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	1 cut(s)	72
Hin6I	GCGC	2 cut(s)	90, 232
HinP1I	GCGC	2 cut(s)	90, 232
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HpaII	CCGG	2 cut(s)	81, 253
HphI	GGTGA	2 cut(s)	70, 86
Hpy166II	GTNNAC	4 cut(s)	18, 202, 214, 337
Hpy188I	TCNGA	4 cut(s)	143, 187, 288, 322
Hpy188III	TCNNGA	2 cut(s)	61, 191
Hpy8I	GTNNAC	4 cut(s)	18, 202, 214, 337
Hpy99I	CGWCG	2 cut(s)	22, 130
HpyAV	CCTTC	2 cut(s)	189, 265
HpyCH4III	ACNGT	2 cut(s)	199, 352
HpyCH4IV	ACGT	3 cut(s)	261, 279, 315
HpyCH4V	TGCA	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
HpyF3I	CTNAG	2 cut(s)	47, 330
HpySE526I	ACGT	3 cut(s)	261, 279, 315
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	72
HspAI	GCGC	2 cut(s)	90, 232
Kzo9I	GATC	4 cut(s)	75, 187, 226, 249
LpnPI	CCDG	4 cut(s)	94, 111, 204, 266
LweI	GCATC	1 cut(s)	134
MaeII	ACGT	3 cut(s)	261, 279, 315
MalI	GATC	4 cut(s)	77, 189, 228, 251
MboI	GATC	4 cut(s)	75, 187, 226, 249
MboII	GAAGA	3 cut(s)	176, 313, 316
MflI	RGATCY	1 cut(s)	187
MluI	ACGCGT	1 cut(s)	371
MnlI	CCTC	6 cut(s)	40, 116, 193, 349, 352, 374
MroXI	GAANNNNTTC	1 cut(s)	114
MspI	CCGG	2 cut(s)	81, 253
MvnI	CGCG	1 cut(s)	373
MwoI	GCNNNNNNNGC	1 cut(s)	240
NcoI	CCATGG	1 cut(s)	68
NdeII	GATC	4 cut(s)	75, 187, 226, 249
NlaIII	CATG	1 cut(s)	72
NlaIV	GGNNCC	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	25
Ppu21I	YACGTR	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SalI	GTCGAC	1 cut(s)	16
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	4 cut(s)	75, 187, 226, 249
Sau96I	GGNCC	1 cut(s)	83
SetI	ASST	8 cut(s)	48, 88, 108, 115, 264, 282, 318, 336
SfaNI	GCATC	1 cut(s)	134
SinI	GGWCC	1 cut(s)	83
SnaBI	TACGTA	1 cut(s)	262
SsiI	CCGC	4 cut(s)	23, 52, 150, 241
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	199, 352
TaiI	ACGT	3 cut(s)	264, 282, 318
TaqI	TCGA	3 cut(s)	17, 108, 354
TauI	GCSGC	1 cut(s)	26
TscAI	CASTG	1 cut(s)	18
TspDTI	ATGAA	2 cut(s)	177, 308
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	83
XmiI	GTMKAC	3 cut(s)	17, 201, 213
XmnI	GAANNNNTTC	1 cut(s)	114
ZraI	GACGTC	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.