Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011239

Physical Location & Seq

Genomic Coordinates Reverse (-)

7762510 .. 7764679

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13720.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCAAAAACGGCGTCGTCTCTCCTCCAAACCCTAAGGCGCTACGTGAAGAAGCCCTGGGAGATAACCGGCCCTTGCGCCGACCCGGAATACCGACTCGCCGTGCCTCTCGCCACCGAGTACCGCCTGGAGTGCCCCGCCACCGTGAAGGTCGCCGCCTGCGTGCCCACCGCCAACCCCGAGCACGTCTTCGACATCAAGTACTTCCCTCGCGACCAGCGCCGCAACCGGCCCCCGATCAAACGCACCGTTTTGAAGAAGGCCGACGTGGAGAAGCAGATGAAGGAGAAGACCTTCACCGCCTCGGATTTCCCGCCGGTGTACTTGGTGGATTTCGTCGAGGAGGACTACAATGCCAGAGGTGGAGGCTATTGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.44

Weight (kDa)

9.19

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08060
fragaria_vesca	FvH4_5g13720 FvH4_5g13720 FvH4_5g13720 FvH4_5g13720
malus_domestica	MD06G1226100.v1.1 MD14G1213000.v1.1
prunus_persica	Prupe.5G206300_v2.0.a1
pyrus_communis	pycom14g17660
rosa_chinensis	RchiOBHm_Chr7g0183221
rosa_laevigata	RLG00000005064
rosa_multiflora	Rmu_sc0006717.1_g000001 Rmu_ssc0000111.1_g000029
rosa_rugosa	Rorug06G0455300
rosa_samantha	Rh7AG057300 Rh7BG057200 Rh7CG058400 Rh7CG058800 Rh7DG057000
rosa_wichuraiana	Rw7G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	213
AciI	CCGC	7 cut(s)	124, 138, 156, 171, 223, 300, 314
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	3 cut(s)	122, 203, 323
AgsI	TTSAA	1 cut(s)	256
AjiI	CACGTC	2 cut(s)	187, 268
AjnI	CCWGG	2 cut(s)	56, 126
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	24
Ama87I	CYCGRG	1 cut(s)	179
AoxI	GGCC	3 cut(s)	70, 230, 261
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	293
AspLEI	GCGC	3 cut(s)	42, 80, 222
AspS9I	GGNCC	2 cut(s)	71, 231
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	179
AxyI	CCTNAGG	1 cut(s)	35
BaeGI	GKGCMC	2 cut(s)	137, 168
BbsI	GAAGAC	2 cut(s)	181, 296
Bbv12I	GWGCWC	1 cut(s)	186
BceAI	ACGGC	2 cut(s)	27, 86
BciT130I	CCWGG	2 cut(s)	58, 128
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	24
BfoI	RGCGCY	2 cut(s)	43, 223
BisI	GCNGC	2 cut(s)	156, 223
BlsI	GCNGC	2 cut(s)	157, 224
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	3 cut(s)	58, 86, 128
BmeT110I	CYCGRG	1 cut(s)	179
BmgBI	CACGTC	2 cut(s)	187, 268
BmgT120I	GGNCC	2 cut(s)	71, 231
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	3 cut(s)	58, 86, 128
BpiI	GAAGAC	2 cut(s)	181, 296
BpmI	CTGGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	86
BsaAI	YACGTR	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	56, 57, 303
Bse118I	RCCGGY	3 cut(s)	68, 228, 316
Bse21I	CCTNAGG	1 cut(s)	35
BseBI	CCWGG	2 cut(s)	58, 128
BseDI	CCNNGG	3 cut(s)	56, 57, 303
BseRI	GAGGAG	2 cut(s)	14, 356
BseSI	GKGCMC	2 cut(s)	137, 168
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	72, 232, 263
BsiHKAI	GWGCWC	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	4 cut(s)	69, 86, 229, 317
BsmAI	GTCTC	1 cut(s)	24
BsmBI	CGTCTC	1 cut(s)	24
BsnI	GGCC	3 cut(s)	72, 232, 263
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	3 cut(s)	137, 168, 186
Bsp143I	GATC	1 cut(s)	237
Bsp68I	TCGCGA	1 cut(s)	213
BspACI	CCGC	7 cut(s)	124, 138, 156, 171, 223, 300, 314
BspANI	GGCC	3 cut(s)	72, 232, 263
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	233
BsrFI	RCCGGY	3 cut(s)	68, 228, 316
BssAI	RCCGGY	3 cut(s)	68, 228, 316
BssECI	CCNNGG	3 cut(s)	56, 57, 303
BssMI	GATC	1 cut(s)	237
BssNI	GRCGYC	1 cut(s)	14
Bst2UI	CCWGG	2 cut(s)	58, 128
Bst4CI	ACNGT	2 cut(s)	145, 250
BstACI	GRCGYC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	46
BstC8I	GCNNGC	2 cut(s)	160, 164
BstDEI	CTNAG	1 cut(s)	35
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	2 cut(s)	43, 223
BstHHI	GCGC	3 cut(s)	42, 80, 222
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 132, 219
BstNI	CCWGG	2 cut(s)	58, 128
BstSCI	CCNGG	3 cut(s)	56, 84, 126
BstSLI	GKGCMC	2 cut(s)	137, 168
BstUI	CGCG	1 cut(s)	213
BstV2I	GAAGAC	2 cut(s)	181, 296
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	72, 232, 263
BtrI	CACGTC	2 cut(s)	187, 268
BtuMI	TCGCGA	1 cut(s)	213
Cac8I	GCNNGC	2 cut(s)	160, 164
CfoI	GCGC	3 cut(s)	42, 80, 222
Cfr10I	RCCGGY	3 cut(s)	68, 228, 316
Cfr13I	GGNCC	2 cut(s)	71, 231
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	3 cut(s)	121, 202, 322
CviJI	RGCY	5 cut(s)	55, 72, 232, 263, 369
CviKI_1	RGCY	5 cut(s)	55, 72, 232, 263, 369
CviQI	GTAC	3 cut(s)	121, 202, 322
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
Eco81I	CCTNAGG	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	179
EcoRII	CCWGG	2 cut(s)	56, 126
Esp3I	CGTCTC	1 cut(s)	24
FauI	CCCGC	2 cut(s)	145, 321
Fnu4HI	GCNGC	2 cut(s)	156, 223
Fsp4HI	GCNGC	2 cut(s)	156, 223
GlaI	GCGC	3 cut(s)	41, 79, 221
GluI	GCNGC	2 cut(s)	156, 223
GsuI	CTGGAG	1 cut(s)	149
HaeII	RGCGCY	2 cut(s)	43, 223
HaeIII	GGCC	3 cut(s)	72, 232, 263
HapII	CCGG	4 cut(s)	69, 86, 229, 317
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	3 cut(s)	42, 80, 222
Hin1I	GRCGYC	1 cut(s)	14
Hin6I	GCGC	3 cut(s)	40, 78, 220
HinP1I	GCGC	3 cut(s)	40, 78, 220
HinfI	GANTC	1 cut(s)	96
HpaII	CCGG	4 cut(s)	69, 86, 229, 317
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	322
Hpy99I	CGWCG	3 cut(s)	19, 269, 341
HpyAV	CCTTC	4 cut(s)	142, 253, 277, 304
HpyCH4III	ACNGT	2 cut(s)	145, 250
HpyCH4IV	ACGT	3 cut(s)	45, 186, 267
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 132, 219
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	3 cut(s)	45, 186, 267
Hsp92I	GRCGYC	1 cut(s)	14
HspAI	GCGC	3 cut(s)	40, 78, 220
Kzo9I	GATC	1 cut(s)	237
MaeII	ACGT	3 cut(s)	45, 186, 267
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	4 cut(s)	61, 181, 268, 301
MhlI	GDGCHC	3 cut(s)	137, 168, 186
MlyI	GAGTC	1 cut(s)	90
MnlI	CCTC	8 cut(s)	35, 117, 219, 313, 334, 337, 353, 359
MroXI	GAANNNNTTC	1 cut(s)	293
MspI	CCGG	4 cut(s)	69, 86, 229, 317
MspR9I	CCNGG	3 cut(s)	58, 86, 128
MvaI	CCWGG	2 cut(s)	58, 128
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	3 cut(s)	11, 132, 219
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	1 cut(s)	237
NlaIV	GGNNCC	1 cut(s)	233
NruI	TCGCGA	1 cut(s)	213
PasI	CCCWGGG	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	157, 224
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
Ppu21I	YACGTR	1 cut(s)	46
Psp6I	CCWGG	2 cut(s)	56, 126
PspGI	CCWGG	2 cut(s)	56, 126
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	2 cut(s)	71, 231
RruI	TCGCGA	1 cut(s)	213
RsaI	GTAC	3 cut(s)	122, 203, 323
RsaNI	GTAC	3 cut(s)	121, 202, 322
SatI	GCNGC	2 cut(s)	156, 223
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	2 cut(s)	71, 231
ScaI	AGTACT	1 cut(s)	203
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	3 cut(s)	58, 86, 128
SduI	GDGCHC	3 cut(s)	137, 168, 186
SetI	ASST	6 cut(s)	48, 153, 189, 270, 296, 364
SgrAI	CRCCGGYG	1 cut(s)	316
SsiI	CCGC	7 cut(s)	124, 138, 156, 171, 223, 300, 314
StyD4I	CCNGG	3 cut(s)	56, 84, 126
TaaI	ACNGT	2 cut(s)	145, 250
TaiI	ACGT	3 cut(s)	48, 189, 270
TaqI	TCGA	2 cut(s)	192, 339
TatI	WGTACW	2 cut(s)	201, 321
TauI	GCSGC	2 cut(s)	158, 225
TspDTI	ATGAA	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	293
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.