Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011239

Physical Location & Seq

Genomic Coordinates Forward (+)

58325825 .. 58331877

Gene Structure 6053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0455300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2127 bp

ATGGTGAATTCTATGGTGGAGCGCGCCACGAGCGACATGCTCATCGGTCCTGATTGGGCCATGAACATCGAAATCTGCGACATATGCAACCACGACCCTGTGCAAGCAAAGGATGTTGTTAAAGGTATAAAGAAGCGCCTTGGAAGTAGGAATTCAAAAGTTCAACTTCTTGCCCTTACACTGTTGGAAACAATAATAAAGAATTGTGGAGATATTGTGCATATGCATGTAGCAGAGAAAGACCTCCTCCATGAGATGGTAAAAATAGTAAAGAAGAAGCCGGACTATCATGTCAAAGAGAAGATATTGATCCTGATAGATACCTGGCAAGAAGCTTTCGGTGGCCCAAGAGCAAGATATCCACAATACTATGCTGCATACCAGGAATTGTTGCGTGCTGGAGCAGTATTCCCCCACAGATCTGAGGCCGCTGCTCCTGTATTCACACCTCCCCAGACGCAACCATTGTCATCACTCCCTCAAAATCTGCACAATCCAGATCTTCCGAGAGACATATCTGAGCCTTCTGCAGAGCCCGAGTTCCCAACATTAAGCTTGACTGAAATTCAGAATGCACGGGGTATTATGGATGTCTTGGCGGAAATGCTAAGTGCTATCGATCCAGAGAACAAAGAGGGGCTTAGGCAGGAGGTTATTGTTGATTTGGTTGAACAGTGTCGTACATATAAGCAGAGGGTGGTACACCTTGTTAACTCGACTTCGGATGAATCACTTCTATGTCAAGGACTAGCACTGAATGATGACTTGCAACGTCTTCTAGCCAAACATGAAGCCATTGCTTCAGGCAATCCAGTTCAACCGGATAAACCCAAGGCTGGACCTCCTGGAGCACTTGTAGATGTTGGTGGTCCTCTTATTGACACTGGAAATGATAACAAACAGCTTGATGGGAGATCCACTTCGAGTGCTGGTGCAAGCTCTAATCCACTAAATCAGTTATTACTGACTGGACCTCCAACTACTAATGGTGCAGCTCCTACGACAAAGGTCGATCCCAAGATGGATCTTCTTAGCGGAGATGACTTCAACTCACCGAAGGCAGATTCACTGGCTCTTGTTCCTGTGGATCAACAGCCAAGTAGTACTCCTGTATCCAATGCTCTTGTTCTTATGGACATGTTTTCTGACGGTAACAGTGCCCCAAATCCTGTAAATACCAATTCTCCTCATGCAGCCAACCAAACCAGTCCTTTAAACCCACAATTTCAACAGCAGCGGAATTTTCAAGCTCCACAAGGGGGAGTTCTCCCAAATGGAAGTGTCCCAAACATGGGAGCACCTCAGTATGAGCAGTCACTGTACGCACAAGGAGGTGGTCCCACTTGGAATGGTCAGATTATGCAGCAGCAGCAGCCGCCTTCACCAGGATATGGTTCACCAACCAGCGGATCATTACCACCGCCTCCCTGGGAAGCTCAGTCAGCAGATGATGGAAGCCCAGTAACAGGTTCTCCATATGCACCACCAATGCAAGTTACTCAAGTGGTTGTCACACATGCACAGGGTGGTTTCCATCCACAGGGACCTCAACGGTCAACTAGTGACCCTGTAGTTGGTATGTACATTCAACCAATTACAAGTAACCATTTGTCCGCAATCAATCAGCAGGTTGCTCCGAGCAGTCAGTTGGGTTTGGCGCCGTCTCAACCACTTCAAGGGCCATCTATGGGTATGCTTCCACAGCCACCTACTCAAGCTGCATACCCTCAACAAATGTATGGCAATCAAATGGTCCCCTATGGCTATGATCAGCAACAACAACAACAACAACAACAAGCGCAATACCTTCAGCAGCAACAGCAACATCAACATCAACAAGGGCAATATCTCCAGCAGCAACATCAACAAGCGCAATACCTCCAGCAGCAACAGCTACATGCACAATACTATCAGCAACAGCAACAGCAGCAGCAATATCTTCAGCAGCAGATGCACGGTCTTTCTGTTAATGATAATGGTACGAGAAACTCCTACCAGGCTCCCACATCATCGTATGTCCCACCTAGCAGGCCAGCCAAGCCAGAGGACAAGCTATTTGGAGACCTTGTTGACTTTGCAAAACTGAAACCAACAAAACCCACGGCCGGCAGAACTGGTAGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006996 GO:0007029 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010256 GO:0016020 GO:0016043 GO:0016740 GO:0019538 GO:0019787 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045048 GO:0045184 GO:0051087 GO:0051179 GO:0051205 GO:0051234 GO:0051641 GO:0061024 GO:0070013 GO:0070727 GO:0071704 GO:0071816 GO:0071818 GO:0071840 GO:0072379 GO:0072657 GO:0090150 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

708

Amino Acids

77.19

Weight (kDa)

5.62

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VHS	PF00790	3 - 128	5.3e-32	VHS domain
GAT	PF03127	196 - 269	3e-18	GAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08060
fragaria_vesca	FvH4_5g13720 FvH4_5g13720 FvH4_5g13720 FvH4_5g13720
malus_domestica	MD06G1226100.v1.1 MD14G1213000.v1.1
prunus_persica	Prupe.5G206300_v2.0.a1
pyrus_communis	pycom14g17660
rosa_chinensis	RchiOBHm_Chr7g0183221
rosa_laevigata	RLG00000005064
rosa_multiflora	Rmu_sc0006717.1_g000001 Rmu_ssc0000111.1_g000029
rosa_rugosa	Rorug06G0455300
rosa_samantha	Rh7AG057300 Rh7BG057200 Rh7CG058400 Rh7CG058800 Rh7DG057000
rosa_wichuraiana	Rw7G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	1618
AccB1I	GGYRCC	1 cut(s)	1657
AccB7I	CCANNNNNTGG	2 cut(s)	256, 1391
AccII	CGCG	1 cut(s)	24
AciI	CCGC	8 cut(s)	429, 599, 1035, 1237, 1376, 1407, 1421, 1614
AclWI	GGATC	7 cut(s)	304, 614, 909, 1007, 1032, 1095, 1417
AcoI	YGGCCR	1 cut(s)	2103
AcsI	RAATTY	4 cut(s)	7, 151, 564, 1240
AcuI	CTGAAG	3 cut(s)	786, 1793, 1925
AcyI	GRCGYC	1 cut(s)	1658
AdeI	CACNNNGTG	1 cut(s)	1526
AfaI	GTAC	6 cut(s)	682, 702, 1105, 1322, 1583, 1981
AflIII	ACRYGT	1 cut(s)	1137
AgsI	TTSAA	9 cut(s)	156, 164, 671, 818, 1048, 1229, 1247, 1589, 1676
AhlI	ACTAGT	1 cut(s)	1559
AjnI	CCWGG	6 cut(s)	323, 381, 844, 1384, 1427, 1995
Alw21I	GWGCWC	2 cut(s)	853, 1300
Alw26I	GTCTC	3 cut(s)	504, 1668, 2055
AlwI	GGATC	7 cut(s)	304, 614, 909, 1007, 1032, 1095, 1417
AlwNI	CAGNNNCTG	1 cut(s)	1318
Ama87I	CYCGRG	1 cut(s)	536
AoxI	GGCC	6 cut(s)	57, 343, 426, 1679, 2030, 2103
ApoI	RAATTY	4 cut(s)	7, 151, 564, 1240
ArsI	GACNNNNNNTTYG	2 cut(s)	2039, 2071
Asp700I	GAANNNNTTC	1 cut(s)	732
AspLEI	GCGC	6 cut(s)	24, 26, 138, 1660, 1801, 1873
AsuHPI	GGTGA	4 cut(s)	16, 1044, 1374, 1389
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	7 cut(s)	47, 839, 869, 971, 1337, 1544, 1753
BaeGI	GKGCMC	1 cut(s)	1162
BaeI	ACNNNNGTAYC	2 cut(s)	1095, 1128
BanI	GGYRCC	1 cut(s)	1657
BanII	GRGCYC	1 cut(s)	537
BauI	CACGAG	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	767
Bbv12I	GWGCWC	2 cut(s)	853, 1300
BccI	CCATC	6 cut(s)	250, 902, 1015, 1445, 1542, 1690
BceAI	ACGGC	2 cut(s)	1645, 2118
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	6 cut(s)	325, 383, 846, 1386, 1429, 1997
BciVI	GTATCC	1 cut(s)	1123
BclI	TGATCA	1 cut(s)	1768
BcoDI	GTCTC	3 cut(s)	504, 1668, 2055
BcuI	ACTAGT	1 cut(s)	1559
BfaI	CTAG	4 cut(s)	749, 779, 1560, 2025
BfmI	CTRYAG	2 cut(s)	528, 1569
BfoI	RGCGCY	2 cut(s)	139, 1661
BfuAI	ACCTGC	1 cut(s)	1618
BfuI	GTATCC	1 cut(s)	1123
BglII	AGATCT	2 cut(s)	419, 499
BmcAI	AGTACT	1 cut(s)	1105
Bme1390I	CCNGG	6 cut(s)	325, 383, 846, 1386, 1429, 1997
Bme18I	GGWCC	7 cut(s)	47, 839, 869, 971, 1337, 1544, 1753
BmeT110I	CYCGRG	1 cut(s)	536
BmiI	GGNNCC	5 cut(s)	1339, 1545, 1659, 1755, 2001
BmrFI	CCNGG	6 cut(s)	325, 383, 846, 1386, 1429, 1997
BmrI	ACTGGG	1 cut(s)	1454
BmsI	GCATC	1 cut(s)	1941
BmuI	ACTGGG	1 cut(s)	1454
BoxI	GACNNNNGTC	1 cut(s)	1007
BpiI	GAAGAC	1 cut(s)	767
BpmI	CTGGAG	4 cut(s)	420, 867, 1835, 1865
Bpu10I	CCTNAGC	1 cut(s)	641
BpuEI	CTTGAG	2 cut(s)	1485, 1698
Bsa29I	ATCGAT	1 cut(s)	618
BsaBI	GATNNNNATC	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	1658
BsaI	GGTCTC	1 cut(s)	2055
BsaJI	CCNNGG	5 cut(s)	139, 831, 1427, 1428, 2100
BsaWI	WCCGGW	1 cut(s)	820
Bse118I	RCCGGY	1 cut(s)	2105
Bse1I	ACTGG	7 cut(s)	812, 889, 973, 1074, 1206, 1460, 2119
Bse3DI	GCAATG	1 cut(s)	795
Bse8I	GATNNNNATC	1 cut(s)	308
BseBI	CCWGG	6 cut(s)	325, 383, 846, 1386, 1429, 1997
BseCI	ATCGAT	1 cut(s)	618
BseDI	CCNNGG	5 cut(s)	139, 831, 1427, 1428, 2100
BseGI	GGATG	4 cut(s)	118, 595, 730, 1534
BseJI	GATNNNNATC	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	4 cut(s)	414, 510, 1316, 1451
BseNI	ACTGG	7 cut(s)	812, 889, 973, 1074, 1206, 1460, 2119
BsePI	GCGCGC	1 cut(s)	22
BseRI	GAGGAG	2 cut(s)	236, 1176
BseSI	GKGCMC	1 cut(s)	1162
BseX3I	CGGCCG	1 cut(s)	2103
BsgI	GTGCAG	2 cut(s)	473, 1011
Bsh1236I	CGCG	1 cut(s)	24
Bsh1285I	CGRYCG	1 cut(s)	2106
BshFI	GGCC	6 cut(s)	59, 345, 428, 1681, 2032, 2105
BshNI	GGYRCC	1 cut(s)	1657
BshVI	ATCGAT	1 cut(s)	618
BsiEI	CGRYCG	1 cut(s)	2106
BsiHKAI	GWGCWC	2 cut(s)	853, 1300
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	3 cut(s)	281, 821, 2106
BslFI	GGGAC	5 cut(s)	1268, 1323, 1557, 1739, 2003
BsmAI	GTCTC	3 cut(s)	504, 1668, 2055
BsmBI	CGTCTC	1 cut(s)	1668
BsmFI	GGGAC	5 cut(s)	1268, 1323, 1557, 1739, 2003
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	6 cut(s)	59, 345, 428, 1681, 2032, 2105
Bso31I	GGTCTC	1 cut(s)	2055
BsoBI	CYCGRG	1 cut(s)	536
Bsp1286I	GDGCHC	4 cut(s)	537, 853, 1162, 1300
Bsp1407I	TGTACA	1 cut(s)	1581
BspACI	CCGC	8 cut(s)	429, 599, 1035, 1237, 1376, 1407, 1421, 1614
BspANI	GGCC	6 cut(s)	59, 345, 428, 1681, 2032, 2105
BspCNI	CTCAG	4 cut(s)	415, 511, 1315, 1450
BspDI	ATCGAT	1 cut(s)	618
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	5 cut(s)	1339, 1545, 1659, 1755, 2001
BspMAI	CTGCAG	1 cut(s)	532
BspMI	ACCTGC	1 cut(s)	1618
BspPI	GGATC	7 cut(s)	304, 614, 909, 1007, 1032, 1095, 1417
BspT107I	GGYRCC	1 cut(s)	1657
BspTNI	GGTCTC	1 cut(s)	2055
BsrDI	GCAATG	1 cut(s)	795
BsrFI	RCCGGY	1 cut(s)	2105
BsrGI	TGTACA	1 cut(s)	1581
BsrI	ACTGG	7 cut(s)	812, 889, 973, 1074, 1206, 1460, 2119
BssAI	RCCGGY	1 cut(s)	2105
BssECI	CCNNGG	5 cut(s)	139, 831, 1427, 1428, 2100
BssHII	GCGCGC	1 cut(s)	22
BssNI	GRCGYC	1 cut(s)	1658
BssSI	CACGAG	1 cut(s)	28
BssT1I	CCWWGG	2 cut(s)	139, 831
Bst2BI	CACGAG	1 cut(s)	28
Bst2UI	CCWGG	6 cut(s)	325, 383, 846, 1386, 1429, 1997
Bst4CI	ACNGT	7 cut(s)	183, 675, 1151, 1157, 1320, 1554, 1958
BstACI	GRCGYC	1 cut(s)	1658
BstAPI	GCANNNNNTGC	1 cut(s)	1951
BstAUI	TGTACA	1 cut(s)	1581
BstC8I	GCNNGC	7 cut(s)	24, 105, 396, 937, 2030, 2034, 2107
BstDEI	CTNAG	7 cut(s)	423, 519, 608, 641, 1031, 1302, 1437
BstDSI	CCRYGG	1 cut(s)	2100
BstENI	CCTNNNNNAGG	1 cut(s)	1383
BstF5I	GGATG	4 cut(s)	118, 595, 730, 1534
BstFNI	CGCG	1 cut(s)	24
BstH2I	RGCGCY	2 cut(s)	139, 1661
BstHHI	GCGC	6 cut(s)	24, 26, 138, 1660, 1801, 1873
BstMAI	GTCTC	3 cut(s)	504, 1668, 2055
BstMCI	CGRYCG	1 cut(s)	2106
BstNI	CCWGG	6 cut(s)	325, 383, 846, 1386, 1429, 1997
BstNSI	RCATGY	6 cut(s)	40, 230, 1141, 1520, 1901, 2125
BstPAI	GACNNNNGTC	1 cut(s)	1007
BstSCI	CCNGG	6 cut(s)	323, 381, 844, 1384, 1427, 1995
BstSFI	CTRYAG	2 cut(s)	528, 1569
BstSLI	GKGCMC	1 cut(s)	1162
BstUI	CGCG	1 cut(s)	24
BstV2I	GAAGAC	1 cut(s)	767
BstX2I	RGATCY	4 cut(s)	419, 499, 914, 1024
BstYI	RGATCY	4 cut(s)	419, 499, 914, 1024
BstZI	CGGCCG	1 cut(s)	2103
Bsu15I	ATCGAT	1 cut(s)	618
BsuI	GTATCC	1 cut(s)	1123
BsuRI	GGCC	6 cut(s)	59, 345, 428, 1681, 2032, 2105
BsuTUI	ATCGAT	1 cut(s)	618
BtgI	CCRYGG	1 cut(s)	2100
BtsCI	GGATG	4 cut(s)	118, 595, 730, 1534
BtsIMutI	CAGTG	7 cut(s)	179, 680, 752, 882, 1067, 1162, 1316
BveI	ACCTGC	1 cut(s)	1618
Cac8I	GCNNGC	7 cut(s)	24, 105, 396, 937, 2030, 2034, 2107
CaiI	CAGNNNCTG	1 cut(s)	1318
CfoI	GCGC	6 cut(s)	24, 26, 138, 1660, 1801, 1873
Cfr10I	RCCGGY	1 cut(s)	2105
ClaI	ATCGAT	1 cut(s)	618
CseI	GACGC	1 cut(s)	466
Csp6I	GTAC	6 cut(s)	681, 701, 1104, 1321, 1582, 1980
CviQI	GTAC	6 cut(s)	681, 701, 1104, 1321, 1582, 1980
DdeI	CTNAG	7 cut(s)	423, 519, 608, 641, 1031, 1302, 1437
DinI	GGCGCC	1 cut(s)	1659
DraI	TTTAAA	1 cut(s)	1215
DraIII	CACNNNGTG	1 cut(s)	1526
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	2103
EagI	CGGCCG	1 cut(s)	2103
EciI	GGCGGA	1 cut(s)	614
EclXI	CGGCCG	1 cut(s)	2103
Eco130I	CCWWGG	2 cut(s)	139, 831
Eco24I	GRGCYC	1 cut(s)	537
Eco31I	GGTCTC	1 cut(s)	2055
Eco32I	GATATC	1 cut(s)	359
Eco47I	GGWCC	7 cut(s)	47, 839, 869, 971, 1337, 1544, 1753
Eco52I	CGGCCG	1 cut(s)	2103
Eco57I	CTGAAG	3 cut(s)	786, 1793, 1925
Eco88I	CYCGRG	1 cut(s)	536
EcoNI	CCTNNNNNAGG	1 cut(s)	1383
EcoO109I	RGGNCCY	1 cut(s)	1544
EcoRI	GAATTC	2 cut(s)	7, 151
EcoRII	CCWGG	6 cut(s)	323, 381, 844, 1384, 1427, 1995
EcoRV	GATATC	1 cut(s)	359
EcoT14I	CCWWGG	2 cut(s)	139, 831
EcoT22I	ATGCAT	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	537
EgeI	GGCGCC	1 cut(s)	1659
EheI	GGCGCC	1 cut(s)	1659
ErhI	CCWWGG	2 cut(s)	139, 831
Esp3I	CGTCTC	1 cut(s)	1668
FalI	AAGNNNNNCTT	4 cut(s)	150, 182, 624, 656
FaqI	GGGAC	5 cut(s)	1268, 1323, 1557, 1739, 2003
FauNDI	CATATG	3 cut(s)	83, 222, 1477
FbaI	TGATCA	1 cut(s)	1768
FokI	GGATG	4 cut(s)	125, 602, 737, 1521
FriOI	GRGCYC	1 cut(s)	537
FspBI	CTAG	4 cut(s)	749, 779, 1560, 2025
GlaI	GCGC	6 cut(s)	23, 25, 137, 1659, 1800, 1872
GsuI	CTGGAG	4 cut(s)	420, 867, 1835, 1865
HaeII	RGCGCY	2 cut(s)	139, 1661
HaeIII	GGCC	6 cut(s)	59, 345, 428, 1681, 2032, 2105
HapII	CCGG	3 cut(s)	281, 821, 2106
HgaI	GACGC	1 cut(s)	466
HhaI	GCGC	6 cut(s)	24, 26, 138, 1660, 1801, 1873
Hin1I	GRCGYC	1 cut(s)	1658
Hin6I	GCGC	6 cut(s)	22, 24, 136, 1658, 1799, 1871
HinP1I	GCGC	6 cut(s)	22, 24, 136, 1658, 1799, 1871
HincII	GTYRAC	3 cut(s)	712, 1557, 2071
HindII	GTYRAC	3 cut(s)	712, 1557, 2071
HindIII	AAGCTT	2 cut(s)	333, 553
HinfI	GANTC	2 cut(s)	728, 1064
HpaI	GTTAAC	1 cut(s)	712
HpaII	CCGG	3 cut(s)	281, 821, 2106
HphI	GGTGA	4 cut(s)	16, 1044, 1374, 1389
Hpy166II	GTNNAC	5 cut(s)	703, 712, 1397, 1557, 2071
Hpy188I	TCNGA	8 cut(s)	424, 507, 520, 570, 724, 1147, 1356, 1638
Hpy188III	TCNNGA	4 cut(s)	50, 313, 497, 623
Hpy8I	GTNNAC	5 cut(s)	703, 712, 1397, 1557, 2071
HpyAV	CCTTC	4 cut(s)	534, 1051, 1389, 1817
HpyCH4III	ACNGT	7 cut(s)	183, 675, 1151, 1157, 1320, 1554, 1958
HpyCH4IV	ACGT	1 cut(s)	772
HpyF3I	CTNAG	7 cut(s)	423, 519, 608, 641, 1031, 1302, 1437
HpySE526I	ACGT	1 cut(s)	772
Hsp92I	GRCGYC	1 cut(s)	1658
HspAI	GCGC	6 cut(s)	22, 24, 136, 1658, 1799, 1871
KasI	GGCGCC	1 cut(s)	1657
KroI	GCCGGC	1 cut(s)	2105
KroNI	GCCGGC	1 cut(s)	2107
Ksp22I	TGATCA	1 cut(s)	1768
KspAI	GTTAAC	1 cut(s)	712
LmnI	GCTCC	9 cut(s)	19, 401, 439, 848, 1000, 1255, 1295, 1639, 2005
LweI	GCATC	1 cut(s)	1941
MaeI	CTAG	4 cut(s)	749, 779, 1560, 2025
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	7 cut(s)	1151, 1314, 1462, 1495, 1510, 1562, 1601
MboII	GAAGA	6 cut(s)	286, 313, 494, 767, 1019, 1931
MflI	RGATCY	4 cut(s)	419, 499, 914, 1024
MhlI	GDGCHC	4 cut(s)	537, 853, 1162, 1300
MluCI	AATT	9 cut(s)	7, 151, 202, 386, 564, 1180, 1223, 1240, 1593
Mly113I	GGCGCC	1 cut(s)	1658
MmeI	TCCRAC	2 cut(s)	165, 1001
Mph1103I	ATGCAT	1 cut(s)	228
MroNI	GCCGGC	1 cut(s)	2105
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	5 cut(s)	120, 551, 711, 1214, 1968
MslI	CAYNNNNRTG	2 cut(s)	225, 736
MspA1I	CMGCKG	3 cut(s)	431, 1237, 1407
MspI	CCGG	3 cut(s)	281, 821, 2106
MspR9I	CCNGG	6 cut(s)	325, 383, 846, 1386, 1429, 1997
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	6 cut(s)	325, 383, 846, 1386, 1429, 1997
MvnI	CGCG	1 cut(s)	24
NaeI	GCCGGC	1 cut(s)	2107
NarI	GGCGCC	1 cut(s)	1658
NdeI	CATATG	3 cut(s)	83, 222, 1477
NgoMIV	GCCGGC	1 cut(s)	2105
NlaIV	GGNNCC	5 cut(s)	1339, 1545, 1659, 1755, 2001
NmuCI	GTSAC	3 cut(s)	1314, 1510, 1562
NsiI	ATGCAT	1 cut(s)	228
NspI	RCATGY	6 cut(s)	40, 230, 1141, 1520, 1901, 2125
PasI	CCCWGGG	1 cut(s)	1428
PauI	GCGCGC	1 cut(s)	22
PciI	ACATGT	1 cut(s)	1137
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	577
PdiI	GCCGGC	1 cut(s)	2107
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	2 cut(s)	728, 1064
PflMI	CCANNNNNTGG	2 cut(s)	256, 1391
PfoI	TCCNGGA	1 cut(s)	844
PluTI	GGCGCC	1 cut(s)	1661
PpuMI	RGGWCCY	1 cut(s)	1544
PscI	ACATGT	1 cut(s)	1137
PshAI	GACNNNNGTC	1 cut(s)	1007
Psp5II	RGGWCCY	1 cut(s)	1544
Psp6I	CCWGG	6 cut(s)	323, 381, 844, 1384, 1427, 1995
PspGI	CCWGG	6 cut(s)	323, 381, 844, 1384, 1427, 1995
PspN4I	GGNNCC	5 cut(s)	1339, 1545, 1659, 1755, 2001
PspPPI	RGGWCCY	1 cut(s)	1544
PstI	CTGCAG	1 cut(s)	532
PstNI	CAGNNNCTG	1 cut(s)	1318
PsuI	RGATCY	4 cut(s)	419, 499, 914, 1024
PteI	GCGCGC	1 cut(s)	22
RsaI	GTAC	6 cut(s)	682, 702, 1105, 1322, 1583, 1981
RsaNI	GTAC	6 cut(s)	681, 701, 1104, 1321, 1582, 1980
RseI	CAYNNNNRTG	2 cut(s)	225, 736
SaqAI	TTAA	5 cut(s)	120, 551, 711, 1214, 1968
ScaI	AGTACT	1 cut(s)	1105
ScrFI	CCNGG	6 cut(s)	325, 383, 846, 1386, 1429, 1997
SduI	GDGCHC	4 cut(s)	537, 853, 1162, 1300
SfaNI	GCATC	1 cut(s)	1941
SfcI	CTRYAG	2 cut(s)	528, 1569
SfoI	GGCGCC	1 cut(s)	1659
SinI	GGWCC	7 cut(s)	47, 839, 869, 971, 1337, 1544, 1753
SmiMI	CAYNNNNRTG	2 cut(s)	225, 736
SmlI	CTYRAG	2 cut(s)	1500, 1713
SmoI	CTYRAG	2 cut(s)	1500, 1713
SpeI	ACTAGT	1 cut(s)	1559
Sse9I	AATT	9 cut(s)	7, 151, 202, 386, 564, 1180, 1223, 1240, 1593
SsiI	CCGC	8 cut(s)	429, 599, 1035, 1237, 1376, 1407, 1421, 1614
SspDI	GGCGCC	1 cut(s)	1657
SspMI	CTAG	4 cut(s)	749, 779, 1560, 2025
StyD4I	CCNGG	6 cut(s)	323, 381, 844, 1384, 1427, 1995
StyI	CCWWGG	2 cut(s)	139, 831
TaaI	ACNGT	7 cut(s)	183, 675, 1151, 1157, 1320, 1554, 1958
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	5 cut(s)	69, 618, 716, 923, 1011
TaqII	GACCGA	1 cut(s)	35
TasI	AATT	9 cut(s)	7, 151, 202, 386, 564, 1180, 1223, 1240, 1593
TatI	WGTACW	2 cut(s)	1103, 1581
TauI	GCSGC	2 cut(s)	431, 1378
TfiI	GAWTC	2 cut(s)	728, 1064
Tru1I	TTAA	5 cut(s)	120, 551, 711, 1214, 1968
Tru9I	TTAA	5 cut(s)	120, 551, 711, 1214, 1968
TscAI	CASTG	7 cut(s)	186, 680, 759, 889, 1074, 1162, 1323
TseFI	GTSAC	3 cut(s)	1314, 1510, 1562
Tsp45I	GTSAC	3 cut(s)	1314, 1510, 1562
TspDTI	ATGAA	3 cut(s)	77, 741, 804
TspRI	CASTG	7 cut(s)	186, 680, 759, 889, 1074, 1162, 1323
Van91I	CCANNNNNTGG	2 cut(s)	256, 1391
VpaK11BI	GGWCC	7 cut(s)	47, 839, 869, 971, 1337, 1544, 1753
XagI	CCTNNNNNAGG	1 cut(s)	1383
XapI	RAATTY	4 cut(s)	7, 151, 564, 1240
XceI	RCATGY	6 cut(s)	40, 230, 1141, 1520, 1901, 2125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1425
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	4 cut(s)	749, 779, 1560, 2025
ZrmI	AGTACT	1 cut(s)	1105
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.