Rh7CG058800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011239
Physical Location & Seq
Forward (+)
4236854 .. 4239640
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG058800.1

Sequence Viewer

Length: 381 bp
ATGGCGAAAACGGCGTCGTCCCTCCTCCAAACCCTAAAGCGCTACGTCAAGAAACCCTGGGAGATAACCGGTCCCTGCGCCGACCCGGAATACCGACTCGCCGTCCCGCTCGCCACCGAGTACCGCCTCGAGTGCCCCGCCACGGTCAAAGTCGCCGCTTGCGTCCCCACCTCCGACCCCGAGACCGTCTTCGACATCAAGTACTTCCCCCGCGACCAGCGACGCAACCGCCCCCCGATCAAACGCACCGTTTTGAAGAAGGCTGACGTCGAGAAGCAGATGAAGGAGAAGATCTTCACTTCCTCGGATTTCCCGCCGGTGTACTTGGTGGATTTCGTTGAGGAGGACTACAATGCCAGAGGTGGAGGCTATTGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.45

Weight (kDa)

9.04

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 270
AccBSI CCGCTC 1 cut(s) 109
AccII CGCG 1 cut(s) 213
AciI CCGC 7 cut(s) 107, 124, 138, 156, 211, 229, 314
AcyI GRCGYC 2 cut(s) 14, 267
AfaI GTAC 3 cut(s) 122, 203, 323
AfeI AGCGCT 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 142
AgeI ACCGGT 1 cut(s) 68
AgsI TTSAA 1 cut(s) 256
AhdI GACNNNNNGTC 1 cut(s) 101
AjnI CCWGG 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 176
Ama87I CYCGRG 2 cut(s) 128, 179
Aor51HI AGCGCT 1 cut(s) 41
ArsI GACNNNNNNTTYG 1 cut(s) 31
AsiGI ACCGGT 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 293
AspLEI GCGC 2 cut(s) 42, 80
AspS9I GGNCC 1 cut(s) 71
AsuC2I CCSGG 1 cut(s) 86
AvaI CYCGRG 2 cut(s) 128, 179
AvaII GGWCC 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 181
BceAI ACGGC 2 cut(s) 27, 86
BciT130I CCWGG 1 cut(s) 58
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 176
BfoI RGCGCY 1 cut(s) 43
BglII AGATCT 1 cut(s) 291
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmcAI AGTACT 1 cut(s) 203
Bme1390I CCNGG 2 cut(s) 58, 86
Bme18I GGWCC 1 cut(s) 71
BmeRI GACNNNNNGTC 1 cut(s) 101
BmeT110I CYCGRG 2 cut(s) 128, 179
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 73
BmrFI CCNGG 2 cut(s) 58, 86
BpiI GAAGAC 1 cut(s) 181
BpuMI CCSGG 1 cut(s) 86
BsaHI GRCGYC 2 cut(s) 14, 267
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 4 cut(s) 56, 57, 141, 303
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse118I RCCGGY 2 cut(s) 68, 316
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 4 cut(s) 56, 57, 141, 303
BseLI CCNNNNNNNGG 1 cut(s) 142
BseRI GAGGAG 2 cut(s) 14, 356
BseSI GKGCMC 1 cut(s) 137
Bsh1236I CGCG 1 cut(s) 213
BshTI ACCGGT 1 cut(s) 68
BsiHKCI CYCGRG 2 cut(s) 128, 179
BsiSI CCGG 3 cut(s) 69, 86, 317
BslFI GGGAC 4 cut(s) 4, 57, 89, 149
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 176
BsmFI GGGAC 4 cut(s) 4, 57, 89, 149
Bso31I GGTCTC 1 cut(s) 176
BsoBI CYCGRG 2 cut(s) 128, 179
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 2 cut(s) 237, 291
BspACI CCGC 7 cut(s) 107, 124, 138, 156, 211, 229, 314
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 176
BsrBI CCGCTC 1 cut(s) 109
BsrFI RCCGGY 2 cut(s) 68, 316
BssAI RCCGGY 2 cut(s) 68, 316
BssECI CCNNGG 4 cut(s) 56, 57, 141, 303
BssMI GATC 2 cut(s) 237, 291
BssNI GRCGYC 2 cut(s) 14, 267
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 3 cut(s) 145, 187, 250
BstACI GRCGYC 2 cut(s) 14, 267
BstC8I GCNNGC 2 cut(s) 111, 160
BstDSI CCRYGG 1 cut(s) 141
BstFNI CGCG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 2 cut(s) 42, 80
BstKTI GATC 2 cut(s) 240, 294
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 2 cut(s) 237, 291
BstMWI GCNNNNNNNGC 2 cut(s) 11, 132
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 56, 84
BstSLI GKGCMC 1 cut(s) 137
BstUI CGCG 1 cut(s) 213
BstV2I GAAGAC 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 111, 160
CfoI GCGC 2 cut(s) 42, 80
Cfr10I RCCGGY 2 cut(s) 68, 316
Cfr13I GGNCC 1 cut(s) 71
CseI GACGC 3 cut(s) 3, 151, 231
Csp6I GTAC 3 cut(s) 121, 202, 322
CspAI ACCGGT 1 cut(s) 68
CviJI RGCY 2 cut(s) 263, 369
CviKI_1 RGCY 2 cut(s) 263, 369
CviQI GTAC 3 cut(s) 121, 202, 322
DpnI GATC 2 cut(s) 239, 293
DpnII GATC 2 cut(s) 237, 291
DriI GACNNNNNGTC 1 cut(s) 101
Eam1105I GACNNNNNGTC 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 71
Eco47III AGCGCT 1 cut(s) 41
Eco88I CYCGRG 2 cut(s) 128, 179
EcoRII CCWGG 1 cut(s) 56
FaqI GGGAC 4 cut(s) 4, 57, 89, 149
FauI CCCGC 4 cut(s) 114, 145, 218, 321
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
GlaI GCGC 2 cut(s) 41, 79
GluI GCNGC 1 cut(s) 156
HaeII RGCGCY 1 cut(s) 43
HapII CCGG 3 cut(s) 69, 86, 317
HgaI GACGC 3 cut(s) 3, 151, 231
HhaI GCGC 2 cut(s) 42, 80
Hin1I GRCGYC 2 cut(s) 14, 267
Hin6I GCGC 2 cut(s) 40, 78
HinP1I GCGC 2 cut(s) 40, 78
HinfI GANTC 1 cut(s) 96
HpaII CCGG 3 cut(s) 69, 86, 317
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 2 cut(s) 175, 307
Hpy188III TCNNGA 2 cut(s) 49, 271
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 3 cut(s) 19, 225, 272
HpyAV CCTTC 2 cut(s) 253, 277
HpyCH4III ACNGT 3 cut(s) 145, 187, 250
HpyCH4IV ACGT 2 cut(s) 45, 267
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 132
HpySE526I ACGT 2 cut(s) 45, 267
Hsp92I GRCGYC 2 cut(s) 14, 267
HspAI GCGC 2 cut(s) 40, 78
Kzo9I GATC 2 cut(s) 237, 291
LpnPI CCDG 8 cut(s) 43, 70, 82, 88, 99, 230, 330, 370
MaeII ACGT 2 cut(s) 45, 267
MalI GATC 2 cut(s) 239, 293
MbiI CCGCTC 1 cut(s) 109
MboI GATC 2 cut(s) 237, 291
MboII GAAGA 4 cut(s) 181, 268, 286, 301
MflI RGATCY 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 137
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 9 cut(s) 32, 35, 137, 181, 313, 334, 337, 353, 359
MroXI GAANNNNTTC 1 cut(s) 293
MspI CCGG 3 cut(s) 69, 86, 317
MspR9I CCNGG 2 cut(s) 58, 86
MvaI CCWGG 1 cut(s) 58
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 11, 132
NciI CCSGG 1 cut(s) 86
NdeII GATC 2 cut(s) 237, 291
NlaIV GGNNCC 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 128
PasI CCCWGGG 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 293
PinAI ACCGGT 1 cut(s) 68
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 73
PspPI GGNCC 1 cut(s) 71
PspXI VCTCGAGB 1 cut(s) 128
PsuI RGATCY 1 cut(s) 291
RsaI GTAC 3 cut(s) 122, 203, 323
RsaNI GTAC 3 cut(s) 121, 202, 322
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 2 cut(s) 237, 291
Sau96I GGNCC 1 cut(s) 71
ScaI AGTACT 1 cut(s) 203
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 2 cut(s) 58, 86
SduI GDGCHC 1 cut(s) 137
SetI ASST 4 cut(s) 48, 173, 270, 364
Sfr274I CTCGAG 1 cut(s) 128
SgrAI CRCCGGYG 1 cut(s) 316
SinI GGWCC 1 cut(s) 71
SlaI CTCGAG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SsiI CCGC 7 cut(s) 107, 124, 138, 156, 211, 229, 314
StyD4I CCNGG 2 cut(s) 56, 84
TaaI ACNGT 3 cut(s) 145, 187, 250
TaiI ACGT 2 cut(s) 48, 270
TaqI TCGA 3 cut(s) 129, 192, 270
TatI WGTACW 2 cut(s) 201, 321
TauI GCSGC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 293
ZraI GACGTC 1 cut(s) 268
ZrmI AGTACT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.