Prupe.5G206300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011239
Physical Location & Seq
Forward (+)
16469278 .. 16472024
2747 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G206300.1

Sequence Viewer

Length: 396 bp
ATGGCGAAGCCGGTGTCCACCGCCACCTCATCCATTGCCCAAACCCTAAAGCGGTACCTGAAGAAACCGTGGGAGATAACGGGTCCATGCGCGGACCCGGAGTACAAGCTCGCCGTACCCGGCGCGCTCGAGTACCGGCTCGAATGCCCGGCTTCGACCCAGGTCAAGGCCTGCGTGCCCACATCCAACCCGGAAACCGTATACGATATCAAGTACTACGCCCGGGACCAGAGGCGCAATCGGCCCCCCATTAGACGCACCGTTTTGAAGAAGGCTGATGTCGAGAAGCTAATGAAGGAGAAGAAGACCTTCGACGTCTCAGATTTCCCTCCGGTTTACTTGACCGATGTTGTTGAAGAAGACTGCAACGCCCGAGGCGGAGGCTACCAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.83

Weight (kDa)

9.14

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 318
Acc65I GGTACC 1 cut(s) 54
AccB1I GGYRCC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 201
AccII CGCG 2 cut(s) 92, 125
AciI CCGC 4 cut(s) 21, 52, 92, 378
AcuI CTGAAG 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 5 cut(s) 56, 104, 117, 134, 215
AfiI CCNNNNNNNGG 2 cut(s) 51, 166
AgsI TTSAA 2 cut(s) 268, 356
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 2 cut(s) 109, 289
AluI AGCT 2 cut(s) 109, 289
Alw26I GTCTC 1 cut(s) 322
Ama87I CYCGRG 3 cut(s) 128, 222, 372
AoxI GGCC 2 cut(s) 168, 242
ArsI GACNNNNNNTTYG 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 308
Asp718I GGTACC 1 cut(s) 54
AspLEI GCGC 4 cut(s) 92, 125, 127, 237
AspS9I GGNCC 4 cut(s) 83, 94, 226, 243
AsuC2I CCSGG 6 cut(s) 98, 120, 149, 191, 223, 224
AvaI CYCGRG 3 cut(s) 128, 222, 372
AvaII GGWCC 3 cut(s) 83, 94, 226
BaeGI GKGCMC 1 cut(s) 180
BanI GGYRCC 1 cut(s) 54
BbsI GAAGAC 2 cut(s) 311, 366
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 161
BcnI CCSGG 6 cut(s) 98, 120, 149, 191, 223, 224
BcoDI GTCTC 1 cut(s) 322
BmcAI AGTACT 1 cut(s) 215
Bme1390I CCNGG 7 cut(s) 98, 120, 149, 161, 191, 223, 224
Bme18I GGWCC 3 cut(s) 83, 94, 226
BmeT110I CYCGRG 3 cut(s) 128, 222, 372
BmgT120I GGNCC 4 cut(s) 83, 94, 226, 243
BmiI GGNNCC 5 cut(s) 56, 84, 96, 227, 245
BmrFI CCNGG 7 cut(s) 98, 120, 149, 161, 191, 223, 224
BoxI GACNNNNGTC 1 cut(s) 161
BpiI GAAGAC 2 cut(s) 311, 366
BpuMI CCSGG 6 cut(s) 98, 120, 149, 191, 223, 224
BsaHI GRCGYC 1 cut(s) 315
BsaJI CCNNGG 4 cut(s) 68, 159, 222, 373
BsaWI WCCGGW 1 cut(s) 331
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 166
Bse118I RCCGGY 2 cut(s) 10, 135
Bse3DI GCAATG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 4 cut(s) 68, 159, 222, 373
BseGI GGATG 2 cut(s) 29, 182
BseLI CCNNNNNNNGG 2 cut(s) 51, 166
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 333
BsePI GCGCGC 1 cut(s) 123
BseSI GKGCMC 1 cut(s) 180
Bsh1236I CGCG 2 cut(s) 92, 125
BshFI GGCC 2 cut(s) 170, 244
BshNI GGYRCC 1 cut(s) 54
BsiHKCI CYCGRG 3 cut(s) 128, 222, 372
BsiSI CCGG 8 cut(s) 11, 98, 120, 136, 149, 191, 223, 332
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 51, 166
BsmAI GTCTC 1 cut(s) 322
BsmBI CGTCTC 1 cut(s) 322
BsmFI GGGAC 1 cut(s) 239
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 2 cut(s) 170, 244
BsoBI CYCGRG 3 cut(s) 128, 222, 372
Bsp1286I GDGCHC 1 cut(s) 180
BspACI CCGC 4 cut(s) 21, 52, 92, 378
BspANI GGCC 2 cut(s) 170, 244
BspCNI CTCAG 1 cut(s) 332
BspFNI CGCG 2 cut(s) 92, 125
BspLI GGNNCC 5 cut(s) 56, 84, 96, 227, 245
BspT107I GGYRCC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 2 cut(s) 10, 135
BssAI RCCGGY 2 cut(s) 10, 135
BssECI CCNNGG 4 cut(s) 68, 159, 222, 373
BssHII GCGCGC 1 cut(s) 123
BssNAI GTATAC 1 cut(s) 202
BssNI GRCGYC 1 cut(s) 315
Bst1107I GTATAC 1 cut(s) 202
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 3 cut(s) 69, 199, 262
BstACI GRCGYC 1 cut(s) 315
BstC8I GCNNGC 4 cut(s) 111, 125, 172, 176
BstDEI CTNAG 1 cut(s) 319
BstDSI CCRYGG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 29, 182
BstFNI CGCG 2 cut(s) 92, 125
BstHHI GCGC 4 cut(s) 92, 125, 127, 237
BstMAI GTCTC 1 cut(s) 322
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNI CCWGG 1 cut(s) 161
BstPAI GACNNNNGTC 1 cut(s) 161
BstSCI CCNGG 7 cut(s) 96, 118, 147, 159, 189, 221, 222
BstSLI GKGCMC 1 cut(s) 180
BstUI CGCG 2 cut(s) 92, 125
BstV2I GAAGAC 2 cut(s) 311, 366
BstZ17I GTATAC 1 cut(s) 202
BsuRI GGCC 2 cut(s) 170, 244
BtgI CCRYGG 1 cut(s) 68
BtsCI GGATG 2 cut(s) 29, 182
Cac8I GCNNGC 4 cut(s) 111, 125, 172, 176
CfoI GCGC 4 cut(s) 92, 125, 127, 237
Cfr10I RCCGGY 2 cut(s) 10, 135
Cfr13I GGNCC 4 cut(s) 83, 94, 226, 243
Cfr9I CCCGGG 1 cut(s) 222
CseI GACGC 1 cut(s) 264
Csp6I GTAC 5 cut(s) 55, 103, 116, 133, 214
CviAII CATG 1 cut(s) 87
CviJI RGCY 9 cut(s) 10, 109, 139, 152, 170, 244, 275, 289, 384
CviKI_1 RGCY 9 cut(s) 10, 109, 139, 152, 170, 244, 275, 289, 384
CviQI GTAC 5 cut(s) 55, 103, 116, 133, 214
DdeI CTNAG 1 cut(s) 319
EciI GGCGGA 1 cut(s) 393
Eco147I AGGCCT 1 cut(s) 170
Eco32I GATATC 1 cut(s) 208
Eco47I GGWCC 3 cut(s) 83, 94, 226
Eco57I CTGAAG 1 cut(s) 80
Eco88I CYCGRG 3 cut(s) 128, 222, 372
EcoRII CCWGG 1 cut(s) 159
EcoRV GATATC 1 cut(s) 208
Esp3I CGTCTC 1 cut(s) 322
FaeI CATG 1 cut(s) 90
FaiI YATR 2 cut(s) 88, 202
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FaqI GGGAC 1 cut(s) 239
FatI CATG 1 cut(s) 86
FblI GTMKAC 1 cut(s) 201
FokI GGATG 2 cut(s) 16, 169
GlaI GCGC 4 cut(s) 91, 124, 126, 236
HaeIII GGCC 2 cut(s) 170, 244
HapII CCGG 8 cut(s) 11, 98, 120, 136, 149, 191, 223, 332
HgaI GACGC 1 cut(s) 264
HhaI GCGC 4 cut(s) 92, 125, 127, 237
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 1 cut(s) 90
Hin6I GCGC 4 cut(s) 90, 123, 125, 235
HinP1I GCGC 4 cut(s) 90, 123, 125, 235
HpaII CCGG 8 cut(s) 11, 98, 120, 136, 149, 191, 223, 332
Hpy166II GTNNAC 3 cut(s) 18, 202, 337
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 3 cut(s) 18, 202, 337
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 3 cut(s) 265, 289, 319
HpyCH4III ACNGT 3 cut(s) 69, 199, 262
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 1 cut(s) 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 1 cut(s) 319
HpySE526I ACGT 1 cut(s) 315
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 1 cut(s) 90
HspAI GCGC 4 cut(s) 90, 123, 125, 235
KpnI GGTACC 1 cut(s) 58
MaeII ACGT 1 cut(s) 315
MboII GAAGA 6 cut(s) 73, 280, 313, 316, 368, 371
MhlI GDGCHC 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 5 cut(s) 37, 225, 339, 368, 374
MroXI GAANNNNTTC 1 cut(s) 308
MspI CCGG 8 cut(s) 11, 98, 120, 136, 149, 191, 223, 332
MspR9I CCNGG 7 cut(s) 98, 120, 149, 161, 191, 223, 224
Mva1269I GAATGC 1 cut(s) 149
MvaI CCWGG 1 cut(s) 161
MvnI CGCG 2 cut(s) 92, 125
MwoI GCNNNNNNNGC 1 cut(s) 241
NciI CCSGG 6 cut(s) 98, 120, 149, 191, 223, 224
NlaIII CATG 1 cut(s) 90
NlaIV GGNNCC 5 cut(s) 56, 84, 96, 227, 245
PaeR7I CTCGAG 1 cut(s) 128
PauI GCGCGC 1 cut(s) 123
PceI AGGCCT 1 cut(s) 170
PctI GAATGC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 308
PshAI GACNNNNGTC 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 5 cut(s) 56, 84, 96, 227, 245
PspPI GGNCC 4 cut(s) 83, 94, 226, 243
PspXI VCTCGAGB 1 cut(s) 128
PteI GCGCGC 1 cut(s) 123
RsaI GTAC 5 cut(s) 56, 104, 117, 134, 215
RsaNI GTAC 5 cut(s) 55, 103, 116, 133, 214
Sau96I GGNCC 4 cut(s) 83, 94, 226, 243
ScaI AGTACT 1 cut(s) 215
ScrFI CCNGG 7 cut(s) 98, 120, 149, 161, 191, 223, 224
SduI GDGCHC 1 cut(s) 180
SetI ASST 7 cut(s) 29, 60, 111, 165, 291, 311, 318
Sfr274I CTCGAG 1 cut(s) 128
SinI GGWCC 3 cut(s) 83, 94, 226
SlaI CTCGAG 1 cut(s) 128
SmaI CCCGGG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 4 cut(s) 21, 52, 92, 378
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 7 cut(s) 96, 118, 147, 159, 189, 221, 222
TaaI ACNGT 3 cut(s) 69, 199, 262
TaiI ACGT 1 cut(s) 318
TaqI TCGA 5 cut(s) 129, 141, 155, 282, 312
TaqII GACCGA 1 cut(s) 359
TatI WGTACW 2 cut(s) 102, 213
TspDTI ATGAA 1 cut(s) 308
TspMI CCCGGG 1 cut(s) 222
VpaK11BI GGWCC 3 cut(s) 83, 94, 226
XhoI CTCGAG 1 cut(s) 128
XmaI CCCGGG 1 cut(s) 222
XmiI GTMKAC 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 308
ZraI GACGTC 1 cut(s) 316
ZrmI AGTACT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.