Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009526

Physical Location & Seq

Genomic Coordinates Reverse (-)

2631516 .. 2633890

Gene Structure 2375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGGAAGCGATACCGAAGCAGAGAAGTCGATTCAAAAGGAGAAGAAGAAGTACGCTATTACTCTTGCTCCTATCGCTAAACCTCTCGCCGGCAAAAAACTCCAGAAGAGAACTTTCAAACTCATTCAAAAAGCTGCTGGGAAGAAATGTTTGAAGAGAGGAGTTAAAGAAGTGGTTAAGAGCATAAGACGAGGCCAGAAAGGATTATGTGTAATAGCTGGAAACATTTCACCTATTGATGTTATTACTCATCTTCCAATCTTGTGTGAGGAGGCTGGTGTTCCTTATGTATACGTTCCTTCAAAAGAAGATCTTGCGCAAGCAGGGGCAACGAAACGACCAACATGTTGTGTCTTGGTAATGCTTAAACCTGCGAAAGGAGATTTAACTGCAGAAGAACTTGCAAAGTTAAAGACAGACTACGAACAAGTCTCTGACGATATTAAGGAGCTAGCAACTTCTGTAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000469 GO:0000470 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016073 GO:0019538 GO:0022613 GO:0030515 GO:0031118 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034513 GO:0034641 GO:0034645 GO:0034660 GO:0040031 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

156

Amino Acids

16.95

Weight (kDa)

9.46

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	39 - 120	3.5e-24	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08180 AT5G08180
fragaria_vesca	FvH4_5g13030
malus_domestica	MD06G1207900.v1.1 MD14G1218300.v1.1
prunus_persica	Prupe.5G212100_v2.0.a1
pyrus_communis	pycom06g18580 pycom14g18100
rosa_chinensis	RchiOBHm_Chr7g0184101
rosa_laevigata	RLG00000005000 RLG00000021127
rosa_multiflora	Rmu_sc0004712.1_g000005 Rmu_sc0004712.1_g000006 Rmu_sc0004712.1_g000007 Rmu_sc0025350.1_g000010
rosa_roxburghii	Rroxscaffold_3G00269880
rosa_rugosa	Rorug06G0463000
rosa_samantha	Rh7AG082800 Rh7BG064200 Rh7DG064400
rosa_wichuraiana	Rw0G002480 Rw7G005280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	318
Acc36I	ACCTGC	1 cut(s)	379
AccI	GTMKAC	1 cut(s)	291
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	89, 377
AflIII	ACRYGT	1 cut(s)	344
AgsI	TTSAA	5 cut(s)	35, 118, 128, 154, 303
AluBI	AGCT	3 cut(s)	134, 218, 451
AluI	AGCT	3 cut(s)	134, 218, 451
Alw26I	GTCTC	1 cut(s)	436
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	134
Asp700I	GAANNNNTTC	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	222
AsuNHI	GCTAGC	1 cut(s)	451
BarI	GAAGNNNNNNTAC	2 cut(s)	35, 67
BbvI	GCAGC	1 cut(s)	121
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	390
BfuAI	ACCTGC	1 cut(s)	379
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
BmtI	GCTAGC	1 cut(s)	455
BpmI	CTGGAG	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 377
Bse118I	RCCGGY	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	89, 377
BseRI	GAGGAG	2 cut(s)	174, 284
BseXI	GCAGC	1 cut(s)	121
BseYI	CCCAGC	1 cut(s)	137
BshFI	GGCC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	89, 377
BsmAI	GTCTC	1 cut(s)	436
BsnI	GGCC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	195
BspMAI	CTGCAG	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	379
BspOI	GCTAGC	1 cut(s)	455
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssMI	GATC	1 cut(s)	310
BssNAI	GTATAC	1 cut(s)	292
Bst1107I	GTATAC	1 cut(s)	292
Bst6I	CTCTTC	2 cut(s)	101, 149
BstC8I	GCNNGC	3 cut(s)	91, 321, 453
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BstZ17I	GTATAC	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	3 cut(s)	91, 321, 453
CfoI	GCGC	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	1 cut(s)	345
CviJI	RGCY	5 cut(s)	134, 195, 218, 275, 451
CviKI_1	RGCY	5 cut(s)	134, 195, 218, 275, 451
CviQI	GTAC	1 cut(s)	52
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	2 cut(s)	101, 149
EarI	CTCTTC	2 cut(s)	101, 149
EcoNI	CCTNNNNNAGG	1 cut(s)	375
FaeI	CATG	1 cut(s)	348
FaiI	YATR	5 cut(s)	185, 208, 288, 292, 346
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FatI	CATG	1 cut(s)	344
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	452
FspI	TGCGCA	1 cut(s)	318
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	135
GsaI	CCCAGC	1 cut(s)	141
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	348
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	222
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	2 cut(s)	436, 470
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	1 cut(s)	309
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	2 cut(s)	392, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	348
HspAI	GCGC	1 cut(s)	317
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	2 cut(s)	73, 448
LpnPI	CCDG	8 cut(s)	103, 116, 123, 204, 209, 261, 309, 384
Lsp1109I	GCAGC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	1 cut(s)	294
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	8 cut(s)	55, 58, 118, 154, 166, 245, 320, 407
MflI	RGATCY	1 cut(s)	310
MnlI	CCTC	5 cut(s)	93, 152, 185, 262, 265
MroNI	GCCGGC	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	226
MseI	TTAA	6 cut(s)	165, 177, 366, 386, 410, 444
MspI	CCGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	74
NaeI	GCCGGC	1 cut(s)	91
NdeII	GATC	1 cut(s)	310
NgoMIV	GCCGGC	1 cut(s)	89
NheI	GCTAGC	1 cut(s)	451
NlaIII	CATG	1 cut(s)	348
NsbI	TGCGCA	1 cut(s)	318
NspI	RCATGY	1 cut(s)	348
PciI	ACATGT	1 cut(s)	344
PdiI	GCCGGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	136
PscI	ACATGT	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SaqAI	TTAA	6 cut(s)	165, 177, 366, 386, 410, 444
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	1 cut(s)	310
SetI	ASST	7 cut(s)	85, 136, 220, 235, 297, 373, 453
SfcI	CTRYAG	1 cut(s)	390
SspMI	CTAG	1 cut(s)	452
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	6 cut(s)	165, 177, 366, 386, 410, 444
Tru9I	TTAA	6 cut(s)	165, 177, 366, 386, 410, 444
TseI	GCWGC	1 cut(s)	134
XagI	CCTNNNNNAGG	1 cut(s)	375
XceI	RCATGY	1 cut(s)	348
XmiI	GTMKAC	1 cut(s)	291
XmnI	GAANNNNTTC	1 cut(s)	226
XspI	CTAG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.