Rorug06G0463000

H ACA ribonucleoprotein complex subunit 2-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
58844934 .. 58846426
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0463000.1

Sequence Viewer

Length: 1398 bp
ATGGATGGCCAACTTGGTGTAAATGGAGAAAATTCTCTAGTACCCTGCTTGCTAGAGCGATTCCTTGAGTTGGGCTCTGGAACGAGGAGTGAAGTGCCACTACAGGTTTGTTCTGTTAAGGCTGGAGGAATGATGTCCCTAGCAATAGATAATCTCGGTACCCTTTGGATGTGGGGCAATTGTCCACTAGAAAGCAGCAGCAGTGAAGGTGGGTTCTCTCTTGTGAGCAGTTTCACTCCAACCCCAGTGTGGGATTTCCATGGCCACATGGTTGTGAAGGTAGCATGCGGAAATGAGCATGTAGTAGCCCTAGTCACGGCTGGAGAAACATATAAAGGTGAAGATCTTATATGCTTCTCTTGGGGTAGTAACAATCATGGGCAGTTAGGCCTCGGGGATAAAGAGAACCGGAGTCGTCCTGAAATAGTAGAAGATTTTAACAAGGACTCCATATTTGCGGTTTATGAAGTAGCATGTGGGGCTTTTCACACAGCTGTGCTTACCCACAAGAAAAGACCAAGTGAGACATTAGAAAGCATGTGCTGGACGTTTGGCCTTGGAGAAAATGGGCAACTTGGGCATGGAACCACCCAAAGTGCCTCATCTCCTGAAACTGTGAAAGAATTGCCACAATATGTGTATCTGATCTCTGTTGACTGTGGCTTATTCCACACTAGTGTTGTTTCATCTGCAGGAGATGTGTGGTCATGGGGGATGGAGAAGGGTCTCGGTCTATGCCCAGATGCTAGTTTTACTGGGACAGATGCAGGGGATGCCATTTCTCCCTTACAGATTCTGTGTAACGGATCCAATGGGTCTAAATTTCAGGAGCCGGTCCAAGTTGTATGTGGTGCTGCCCATACTGTTCTTGTAGCAAATGATGGATATAAGCTTTGGTCTTGGGGGAGAGGAAGAAGTGGGGTTCTCGGAAATGGCAAGACAATCGACTGTTTTTCTCCCACTGTTGTATTGTGGCCTCCACTTACAGAGGATTTCAAGCAAGAAGAACTAAATACTGTTGGGGAGGGAGACAGAATTGCGGAAGAGAATTCTAAAGGAGTCACCAAAACAGAAAAAGCCTTGTGTTCAGCAATTGAAGAAACGAAACTTCTTCAATCAAAACTCGCAGTGATGGAACGATATGCTGACATACTTCATGGTTCAATATTTGGAAAACCCTTGGAAGAGCAGGATATTCCAATCTCCTTGCAGAACTCAGGTATTCATGACATTGGAAAGGAATGGGACAGAATGCTAGAGTCAGCAGATCCTGCGAAGCTCGTAAGGTTGGAAAAGTTCTATCAAAAAATGCTTGAAGGTGTTAAAGAAAAGCTGTTGAAGAAAAGGATTCAGGAGATAGTAAAAGAGTGTCTCAGTTCTACTATAAACAAAGTATAG

Protein Analysis

465

Amino Acids

50.52

Weight (kDa)

5.08

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 2 - 324 1.3e-46 RCC1-like domain
RCC1_2 PF13540 91 - 128 1.3e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 118 - 167 1.1e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 181 - 227 3.1e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 158
AciI CCGC 3 cut(s) 288, 458, 1040
AclWI GGATC 3 cut(s) 801, 814, 1262
AcoI YGGCCR 2 cut(s) 7, 262
AcsI RAATTY 3 cut(s) 31, 821, 1048
AfaI GTAC 2 cut(s) 42, 160
AfiI CCNNNNNNNGG 4 cut(s) 70, 249, 250, 316
AgsI TTSAA 6 cut(s) 997, 1097, 1115, 1164, 1316, 1339
AhlI ACTAGT 1 cut(s) 674
AleI CACNNNNGTG 2 cut(s) 494, 675
AluBI AGCT 4 cut(s) 494, 892, 1279, 1333
AluI AGCT 4 cut(s) 494, 892, 1279, 1333
Alw26I GTCTC 4 cut(s) 518, 731, 1023, 1376
AlwI GGATC 3 cut(s) 801, 814, 1262
AlwNI CAGNNNCTG 2 cut(s) 796, 1271
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 5 cut(s) 7, 262, 388, 553, 974
ApeKI GCWGC 3 cut(s) 195, 198, 854
ApoI RAATTY 3 cut(s) 31, 821, 1048
ArsI GACNNNNNNTTYG 2 cut(s) 437, 469
Asp718I GGTACC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 835
AsuHPI GGTGA 2 cut(s) 350, 1054
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 1 cut(s) 835
BalI TGGCCA 2 cut(s) 9, 264
BamHI GGATCC 1 cut(s) 806
BanI GGYRCC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 77
BarI GAAGNNNNNNTAC 2 cut(s) 84, 116
BbvI GCAGC 3 cut(s) 207, 210, 841
BccI CCATC 3 cut(s) 709, 875, 1126
BceAI ACGGC 1 cut(s) 333
BcgI CGANNNNNNTGC 2 cut(s) 925, 959
BcoDI GTCTC 4 cut(s) 518, 731, 1023, 1376
BcuI ACTAGT 1 cut(s) 674
BfaI CTAG 8 cut(s) 38, 53, 140, 188, 311, 675, 747, 1256
BfmI CTRYAG 2 cut(s) 101, 690
BglII AGATCT 1 cut(s) 343
BisI GCNGC 3 cut(s) 196, 199, 855
BlsI GCNGC 3 cut(s) 197, 200, 856
Bme18I GGWCC 1 cut(s) 835
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 835
BmiI GGNNCC 4 cut(s) 160, 586, 808, 831
BmrI ACTGGG 2 cut(s) 239, 765
BmsI GCATC 3 cut(s) 733, 754, 763
BmuI ACTGGG 2 cut(s) 239, 765
BplI GAGNNNNNCTC 2 cut(s) 59, 91
BpmI CTGGAG 2 cut(s) 144, 342
BpuEI CTTGAG 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 731
BsaJI CCNNGG 4 cut(s) 259, 391, 556, 1179
BsaWI WCCGGW 1 cut(s) 408
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 249, 250, 316
Bse118I RCCGGY 1 cut(s) 832
Bse1I ACTGG 2 cut(s) 245, 760
BseDI CCNNGG 4 cut(s) 259, 391, 556, 1179
BseGI GGATG 4 cut(s) 10, 174, 720, 778
BseLI CCNNNNNNNGG 4 cut(s) 70, 249, 250, 316
BseMII CTCAG 2 cut(s) 1230, 1387
BseNI ACTGG 2 cut(s) 245, 760
BseRI GAGGAG 1 cut(s) 100
BseXI GCAGC 3 cut(s) 207, 210, 841
BshFI GGCC 5 cut(s) 9, 264, 390, 555, 976
BshNI GGYRCC 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 2 cut(s) 409, 833
BslFI GGGAC 3 cut(s) 121, 772, 1259
BslI CCNNNNNNNGG 4 cut(s) 70, 249, 250, 316
BsmAI GTCTC 4 cut(s) 518, 731, 1023, 1376
BsmFI GGGAC 3 cut(s) 121, 772, 1259
BsmI GAATGC 1 cut(s) 1257
BsnI GGCC 5 cut(s) 9, 264, 390, 555, 976
Bso31I GGTCTC 1 cut(s) 731
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 4 cut(s) 343, 645, 806, 1267
Bsp19I CCATGG 1 cut(s) 259
BspACI CCGC 3 cut(s) 288, 458, 1040
BspANI GGCC 5 cut(s) 9, 264, 390, 555, 976
BspCNI CTCAG 2 cut(s) 1229, 1386
BspHI TCATGA 1 cut(s) 1225
BspLI GGNNCC 4 cut(s) 160, 586, 808, 831
BspMAI CTGCAG 1 cut(s) 694
BspPI GGATC 3 cut(s) 801, 814, 1262
BspQI GCTCTTC 1 cut(s) 1179
BspT107I GGYRCC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 731
BsrFI RCCGGY 1 cut(s) 832
BsrI ACTGG 2 cut(s) 245, 760
BssAI RCCGGY 1 cut(s) 832
BssECI CCNNGG 4 cut(s) 259, 391, 556, 1179
BssMI GATC 4 cut(s) 343, 645, 806, 1267
BssT1I CCWWGG 3 cut(s) 259, 556, 1179
Bst4CI ACNGT 6 cut(s) 616, 659, 865, 950, 964, 1018
Bst6I CTCTTC 2 cut(s) 1038, 1179
BstAPI GCANNNNNTGC 2 cut(s) 773, 1271
BstC8I GCNNGC 2 cut(s) 50, 286
BstDEI CTNAG 2 cut(s) 1216, 1373
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 4 cut(s) 10, 174, 720, 778
BstKTI GATC 4 cut(s) 346, 648, 809, 1270
BstMAI GTCTC 4 cut(s) 518, 731, 1023, 1376
BstMBI GATC 4 cut(s) 343, 645, 806, 1267
BstMWI GCNNNNNNNGC 4 cut(s) 479, 577, 773, 1271
BstNSI RCATGY 4 cut(s) 288, 302, 477, 541
BstSFI CTRYAG 2 cut(s) 101, 690
BstV1I GCAGC 3 cut(s) 207, 210, 841
BstX2I RGATCY 3 cut(s) 343, 806, 1267
BstYI RGATCY 3 cut(s) 343, 806, 1267
BsuRI GGCC 5 cut(s) 9, 264, 390, 555, 976
BtgI CCRYGG 1 cut(s) 259
BtsCI GGATG 4 cut(s) 10, 174, 720, 778
BtsI GCAGTG 2 cut(s) 208, 1134
BtsIMutI CAGTG 4 cut(s) 208, 252, 960, 1134
Cac8I GCNNGC 2 cut(s) 50, 286
CaiI CAGNNNCTG 2 cut(s) 796, 1271
CciI TCATGA 1 cut(s) 1225
Cfr10I RCCGGY 1 cut(s) 832
Cfr13I GGNCC 1 cut(s) 835
Csp6I GTAC 2 cut(s) 41, 159
CviQI GTAC 2 cut(s) 41, 159
DdeI CTNAG 2 cut(s) 1216, 1373
DpnI GATC 4 cut(s) 345, 647, 808, 1269
DpnII GATC 4 cut(s) 343, 645, 806, 1267
EaeI YGGCCR 2 cut(s) 7, 262
Eam1104I CTCTTC 2 cut(s) 1038, 1179
EarI CTCTTC 2 cut(s) 1038, 1179
Eco130I CCWWGG 3 cut(s) 259, 556, 1179
Eco147I AGGCCT 1 cut(s) 390
Eco24I GRGCYC 1 cut(s) 77
Eco31I GGTCTC 1 cut(s) 731
Eco47I GGWCC 1 cut(s) 835
Eco88I CYCGRG 1 cut(s) 392
EcoRI GAATTC 1 cut(s) 1048
EcoT14I CCWWGG 3 cut(s) 259, 556, 1179
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 3 cut(s) 259, 556, 1179
FaqI GGGAC 3 cut(s) 121, 772, 1259
Fnu4HI GCNGC 3 cut(s) 196, 199, 855
FokI GGATG 4 cut(s) 17, 181, 727, 785
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 3 cut(s) 196, 199, 855
FspBI CTAG 8 cut(s) 38, 53, 140, 188, 311, 675, 747, 1256
GluI GCNGC 3 cut(s) 196, 199, 855
GsuI CTGGAG 2 cut(s) 144, 342
HaeIII GGCC 5 cut(s) 9, 264, 390, 555, 976
HapII CCGG 2 cut(s) 409, 833
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HindIII AAGCTT 1 cut(s) 890
HinfI GANTC 7 cut(s) 60, 412, 446, 793, 1059, 1259, 1348
HpaII CCGG 2 cut(s) 409, 833
HphI GGTGA 2 cut(s) 350, 1054
Hpy166II GTNNAC 2 cut(s) 185, 655
Hpy188I TCNGA 2 cut(s) 645, 929
Hpy188III TCNNGA 6 cut(s) 78, 419, 608, 827, 1226, 1352
Hpy8I GTNNAC 2 cut(s) 185, 655
HpyAV CCTTC 4 cut(s) 200, 271, 715, 1310
HpyCH4III ACNGT 6 cut(s) 616, 659, 865, 950, 964, 1018
HpyCH4IV ACGT 1 cut(s) 548
HpyCH4V TGCA 3 cut(s) 692, 767, 1210
HpyF10VI GCNNNNNNNGC 4 cut(s) 479, 577, 773, 1271
HpyF3I CTNAG 2 cut(s) 1216, 1373
HpySE526I ACGT 1 cut(s) 548
KpnI GGTACC 1 cut(s) 162
Kzo9I GATC 4 cut(s) 343, 645, 806, 1267
LguI GCTCTTC 1 cut(s) 1179
LmnI GCTCC 1 cut(s) 829
Lsp1109I GCAGC 3 cut(s) 207, 210, 841
LweI GCATC 3 cut(s) 733, 754, 763
MaeI CTAG 8 cut(s) 38, 53, 140, 188, 311, 675, 747, 1256
MaeII ACGT 1 cut(s) 548
MaeIII GTNAC 4 cut(s) 313, 368, 800, 1060
MalI GATC 4 cut(s) 345, 647, 808, 1269
MboI GATC 4 cut(s) 343, 645, 806, 1267
MboII GAAGA 9 cut(s) 353, 443, 924, 1016, 1055, 1103, 1109, 1196, 1351
MfeI CAATTG 2 cut(s) 178, 1092
MflI RGATCY 3 cut(s) 343, 806, 1267
MhlI GDGCHC 1 cut(s) 77
MlsI TGGCCA 2 cut(s) 9, 264
MluCI AATT 7 cut(s) 31, 178, 623, 821, 1035, 1048, 1092
MluNI TGGCCA 2 cut(s) 9, 264
MlyI GAGTC 4 cut(s) 421, 440, 1068, 1268
MmeI TCCRAC 2 cut(s) 263, 1269
MnlI CCTC 8 cut(s) 78, 119, 401, 610, 902, 982, 987, 1018
Mox20I TGGCCA 2 cut(s) 9, 264
MscI TGGCCA 2 cut(s) 9, 264
MseI TTAA 3 cut(s) 117, 438, 1323
MslI CAYNNNNRTG 3 cut(s) 272, 494, 675
Msp20I TGGCCA 2 cut(s) 9, 264
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 2 cut(s) 409, 833
MunI CAATTG 2 cut(s) 178, 1092
Mva1269I GAATGC 1 cut(s) 1257
MwoI GCNNNNNNNGC 4 cut(s) 479, 577, 773, 1271
NcoI CCATGG 1 cut(s) 259
NdeII GATC 4 cut(s) 343, 645, 806, 1267
NlaIV GGNNCC 4 cut(s) 160, 586, 808, 831
NmuCI GTSAC 2 cut(s) 313, 1060
NspI RCATGY 4 cut(s) 288, 302, 477, 541
OliI CACNNNNGTG 2 cut(s) 494, 675
PaeI GCATGC 1 cut(s) 288
PagI TCATGA 1 cut(s) 1225
PceI AGGCCT 1 cut(s) 390
PciSI GCTCTTC 1 cut(s) 1179
PctI GAATGC 1 cut(s) 1257
PfeI GAWTC 3 cut(s) 60, 793, 1348
PkrI GCNGC 3 cut(s) 197, 200, 856
PleI GAGTC 4 cut(s) 420, 440, 1067, 1267
PpsI GAGTC 4 cut(s) 420, 440, 1067, 1267
PspN4I GGNNCC 4 cut(s) 160, 586, 808, 831
PspPI GGNCC 1 cut(s) 835
PstI CTGCAG 1 cut(s) 694
PstNI CAGNNNCTG 2 cut(s) 796, 1271
PsuI RGATCY 3 cut(s) 343, 806, 1267
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 2 cut(s) 42, 160
RsaNI GTAC 2 cut(s) 41, 159
RseI CAYNNNNRTG 3 cut(s) 272, 494, 675
SapI GCTCTTC 1 cut(s) 1179
SaqAI TTAA 3 cut(s) 117, 438, 1323
SatI GCNGC 3 cut(s) 196, 199, 855
Sau3AI GATC 4 cut(s) 343, 645, 806, 1267
Sau96I GGNCC 1 cut(s) 835
SchI GAGTC 4 cut(s) 421, 440, 1068, 1268
SduI GDGCHC 1 cut(s) 77
SfaNI GCATC 3 cut(s) 733, 754, 763
SfcI CTRYAG 2 cut(s) 101, 690
SinI GGWCC 1 cut(s) 835
SmiMI CAYNNNNRTG 3 cut(s) 272, 494, 675
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SpeI ACTAGT 1 cut(s) 674
SphI GCATGC 1 cut(s) 288
Sse9I AATT 7 cut(s) 31, 178, 623, 821, 1035, 1048, 1092
SseBI AGGCCT 1 cut(s) 390
SsiI CCGC 3 cut(s) 288, 458, 1040
SspI AATATT 1 cut(s) 1167
SspMI CTAG 8 cut(s) 38, 53, 140, 188, 311, 675, 747, 1256
StuI AGGCCT 1 cut(s) 390
StyI CCWWGG 3 cut(s) 259, 556, 1179
TaaI ACNGT 6 cut(s) 616, 659, 865, 950, 964, 1018
TaiI ACGT 1 cut(s) 551
TaqI TCGA 1 cut(s) 945
TaqII GACCGA 1 cut(s) 719
TasI AATT 7 cut(s) 31, 178, 623, 821, 1035, 1048, 1092
TfiI GAWTC 3 cut(s) 60, 793, 1348
Tru1I TTAA 3 cut(s) 117, 438, 1323
Tru9I TTAA 3 cut(s) 117, 438, 1323
TscAI CASTG 4 cut(s) 208, 252, 967, 1134
TseFI GTSAC 2 cut(s) 313, 1060
TseI GCWGC 3 cut(s) 195, 198, 854
Tsp45I GTSAC 2 cut(s) 313, 1060
TspDTI ATGAA 4 cut(s) 480, 675, 1145, 1214
TspGWI ACGGA 1 cut(s) 819
TspRI CASTG 4 cut(s) 208, 252, 967, 1134
VpaK11BI GGWCC 1 cut(s) 835
XapI RAATTY 3 cut(s) 31, 821, 1048
XceI RCATGY 4 cut(s) 288, 302, 477, 541
XcmI CCANNNNNNNNNTGG 2 cut(s) 246, 845
XspI CTAG 8 cut(s) 38, 53, 140, 188, 311, 675, 747, 1256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.