Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004712.1

Orthogroup ID

OG0009526

Physical Location & Seq

Genomic Coordinates Forward (+)

27707 .. 28900

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004712.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggggagcgatagcgaagtagagaagtcgcaccagaaggagagagagaggaagaagacacaggctctggctccgatagcgaagcccctcgccggcaagaagctcggaaagcgaactctcaagcttgtccgcagagctgctgaacacaaatgcttgaagagaggagtgaaggaggtagttaaaagcatcaggcgaggtcaaaagggattatgtgttatagctgggaacatttctcctatcgatgtgatcactcatgttccaatcttatgtgaagaggctgaaattccatatgtttatgtgtcctccaaagaaggctgcgaacagacgatcccgtcctacgctgacggtcggcatggtggactctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000469 GO:0000470 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016073 GO:0019538 GO:0022613 GO:0030515 GO:0031118 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034513 GO:0034641 GO:0034645 GO:0034660 GO:0040031 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

121

Amino Acids

13.3

Weight (kDa)

9.66

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08180 AT5G08180
fragaria_vesca	FvH4_5g13030
malus_domestica	MD06G1207900.v1.1 MD14G1218300.v1.1
prunus_persica	Prupe.5G212100_v2.0.a1
pyrus_communis	pycom06g18580 pycom14g18100
rosa_chinensis	RchiOBHm_Chr7g0184101
rosa_laevigata	RLG00000005000 RLG00000021127
rosa_multiflora	Rmu_sc0004712.1_g000005 Rmu_sc0004712.1_g000006 Rmu_sc0004712.1_g000007 Rmu_sc0025350.1_g000010
rosa_roxburghii	Rroxscaffold_3G00269880
rosa_rugosa	Rorug06G0463000
rosa_samantha	Rh7AG082800 Rh7BG064200 Rh7DG064400
rosa_wichuraiana	Rw0G002480 Rw7G005280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	331
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	157
AloI	GAACNNNNNNTCC	2 cut(s)	312, 344
AluBI	AGCT	4 cut(s)	103, 124, 137, 221
AluI	AGCT	4 cut(s)	103, 124, 137, 221
AlwI	GGATC	1 cut(s)	322
AlwNI	CAGNNNCTG	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	137, 315
ApoI	RAATTY	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	124, 302
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BclI	TGATCA	1 cut(s)	246
BisI	GCNGC	2 cut(s)	138, 316
BlsI	GCNGC	2 cut(s)	139, 317
BmiI	GGNNCC	1 cut(s)	72
BmsI	GCATC	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	104
Bsa29I	ATCGAT	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse118I	RCCGGY	1 cut(s)	92
BseCI	ATCGAT	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	124, 302
BseYI	CCCAGC	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	349
BshVI	ATCGAT	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	349
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	246, 327
BspACI	CCGC	1 cut(s)	130
BspDI	ATCGAT	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	322
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssMI	GATC	2 cut(s)	246, 327
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	2 cut(s)	152, 267
BstC8I	GCNNGC	1 cut(s)	94
BstKTI	GATC	2 cut(s)	249, 330
BstMBI	GATC	2 cut(s)	246, 327
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 109
BstV1I	GCAGC	2 cut(s)	124, 302
BstV2I	GAAGAC	1 cut(s)	62
Bsu15I	ATCGAT	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	94
CaiI	CAGNNNCTG	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	92
ClaI	ATCGAT	1 cut(s)	240
CviAII	CATG	2 cut(s)	254, 353
CviJI	RGCY	9 cut(s)	65, 71, 85, 103, 124, 137, 221, 278, 315
CviKI_1	RGCY	9 cut(s)	65, 71, 85, 103, 124, 137, 221, 278, 315
DpnI	GATC	2 cut(s)	248, 329
DpnII	GATC	2 cut(s)	246, 327
DrdI	GACNNNNNNGTC	1 cut(s)	331
DseDI	GACNNNNNNGTC	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	152, 267
EarI	CTCTTC	2 cut(s)	152, 267
FaeI	CATG	2 cut(s)	257, 356
FaiI	YATR	8 cut(s)	211, 218, 255, 268, 289, 291, 297, 354
FatI	CATG	2 cut(s)	253, 352
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	138, 316
Fsp4HI	GCNGC	2 cut(s)	138, 316
GluI	GCNGC	2 cut(s)	138, 316
GsaI	CCCAGC	1 cut(s)	225
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	2 cut(s)	257, 356
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	1 cut(s)	360
HpaII	CCGG	1 cut(s)	93
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	3 cut(s)	75, 107, 365
Hpy8I	GTNNAC	1 cut(s)	359
HpyAV	CCTTC	3 cut(s)	31, 163, 305
HpyCH4III	ACNGT	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 109
Hsp92II	CATG	2 cut(s)	257, 356
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	246, 327
LmnI	GCTCC	2 cut(s)	6, 76
LpnPI	CCDG	6 cut(s)	47, 47, 53, 106, 175, 207
Lsp1109I	GCAGC	2 cut(s)	124, 302
LweI	GCATC	1 cut(s)	195
MalI	GATC	2 cut(s)	248, 329
MboI	GATC	2 cut(s)	246, 327
MboII	GAAGA	4 cut(s)	64, 67, 169, 284
MluCI	AATT	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	354
MnlI	CCTC	7 cut(s)	42, 98, 155, 166, 188, 268, 313
MroNI	GCCGGC	1 cut(s)	92
MseI	TTAA	1 cut(s)	180
MspI	CCGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	77, 109
NaeI	GCCGGC	1 cut(s)	94
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	2 cut(s)	246, 327
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	257, 356
NlaIV	GGNNCC	1 cut(s)	72
PdiI	GCCGGC	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	139, 317
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	72
PstNI	CAGNNNCTG	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	2 cut(s)	138, 316
Sau3AI	GATC	2 cut(s)	246, 327
SchI	GAGTC	1 cut(s)	354
SetI	ASST	6 cut(s)	105, 126, 139, 177, 199, 223
SfaNI	GCATC	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	282
SsiI	CCGC	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	282
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseI	GCWGC	2 cut(s)	137, 315
XapI	RAATTY	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.