Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009526

Physical Location & Seq

Genomic Coordinates Forward (+)

62594454 .. 62595816

Gene Structure 1363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00269880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGGAGCGATAGCGAAGTAGAGAAGTCGCACCAGAAGGAGAGAGAGAGGAAGAAGACACAGGCTCTTGCTCCGATAGCGAAGCCCCTCGCCGGAAAGAAGCTCGGAAAGCGAACTCTCAAGCTTGTCCGCAGAGCTGCTGAACACAAATGCTTGAAGAGAGGAGTGAAGGAGGTAGTTAAAAGCATAAGGCGAGGTCAAAAGGGATTATGTGTTATAGCTGGGAACATTTCTCCTATTGATGTGATCACTCATGTTCCAGTCTTATGTGAAGAGGCTGAAATTCCATATGTTTATGTGTCCTCCAAAGAAGATCTTGCAAATGCGGGGGCAACCAAGAGGCCAACATGCTGCGTTCTGGTGATAACCAAGCCGACCAAGGGTGAGTTGGCCCAAGAAGAACAAGAGAAATTAAAGGCAGATTATGATCAGGTTGCAGGAGAAGTTTCTGAACTTTTTTCCTCCACTCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000469 GO:0000470 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016073 GO:0019538 GO:0022613 GO:0030515 GO:0031118 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034513 GO:0034641 GO:0034645 GO:0034660 GO:0040031 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

158

Amino Acids

17.37

Weight (kDa)

9.28

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	40 - 125	6.4e-25	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08180 AT5G08180
fragaria_vesca	FvH4_5g13030
malus_domestica	MD06G1207900.v1.1 MD14G1218300.v1.1
prunus_persica	Prupe.5G212100_v2.0.a1
pyrus_communis	pycom06g18580 pycom14g18100
rosa_chinensis	RchiOBHm_Chr7g0184101
rosa_laevigata	RLG00000005000 RLG00000021127
rosa_multiflora	Rmu_sc0004712.1_g000005 Rmu_sc0004712.1_g000006 Rmu_sc0004712.1_g000007 Rmu_sc0025350.1_g000010
rosa_roxburghii	Rroxscaffold_3G00269880
rosa_rugosa	Rorug06G0463000
rosa_samantha	Rh7AG082800 Rh7BG064200 Rh7DG064400
rosa_wichuraiana	Rw0G002480 Rw7G005280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	130, 326
AcsI	RAATTY	1 cut(s)	282
AfiI	CCNNNNNNNGG	2 cut(s)	92, 380
AgsI	TTSAA	1 cut(s)	157
AluBI	AGCT	4 cut(s)	103, 124, 137, 221
AluI	AGCT	4 cut(s)	103, 124, 137, 221
AoxI	GGCC	2 cut(s)	341, 390
ApeKI	GCWGC	2 cut(s)	137, 351
ApoI	RAATTY	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	391
AsuHPI	GGTGA	2 cut(s)	373, 395
BbsI	GAAGAC	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	124, 338
BclI	TGATCA	2 cut(s)	246, 427
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	2 cut(s)	138, 352
BlsI	GCNGC	2 cut(s)	139, 353
BmgT120I	GGNCC	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 380
Bse1I	ACTGG	1 cut(s)	260
Bse8I	GATNNNNATC	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	378
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	2 cut(s)	92, 380
BseNI	ACTGG	1 cut(s)	260
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	124, 338
BseYI	CCCAGC	1 cut(s)	221
BshFI	GGCC	2 cut(s)	343, 392
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	92, 380
BsnI	GGCC	2 cut(s)	343, 392
Bsp143I	GATC	3 cut(s)	246, 313, 427
BspACI	CCGC	2 cut(s)	130, 326
BspANI	GGCC	2 cut(s)	343, 392
BsrI	ACTGG	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	3 cut(s)	246, 313, 427
BssT1I	CCWWGG	1 cut(s)	378
Bst6I	CTCTTC	2 cut(s)	152, 267
BstKTI	GATC	3 cut(s)	249, 316, 430
BstMBI	GATC	3 cut(s)	246, 313, 427
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 109
BstNSI	RCATGY	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	124, 338
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	343, 392
Cfr13I	GGNCC	1 cut(s)	391
CviAII	CATG	2 cut(s)	254, 348
DpnI	GATC	3 cut(s)	248, 315, 429
DpnII	GATC	3 cut(s)	246, 313, 427
Eam1104I	CTCTTC	2 cut(s)	152, 267
EarI	CTCTTC	2 cut(s)	152, 267
Eco130I	CCWWGG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	2 cut(s)	257, 351
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	2 cut(s)	253, 347
FauI	CCCGC	1 cut(s)	319
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	2 cut(s)	246, 427
Fnu4HI	GCNGC	2 cut(s)	138, 352
Fsp4HI	GCNGC	2 cut(s)	138, 352
GluI	GCNGC	2 cut(s)	138, 352
GsaI	CCCAGC	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	343, 392
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	2 cut(s)	257, 351
HindIII	AAGCTT	1 cut(s)	122
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	373, 395
Hpy188I	TCNGA	4 cut(s)	75, 107, 451, 476
HpyAV	CCTTC	2 cut(s)	31, 163
HpyCH4V	TGCA	2 cut(s)	320, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 109
Hsp92II	CATG	2 cut(s)	257, 351
Ksp22I	TGATCA	2 cut(s)	246, 427
Kzo9I	GATC	3 cut(s)	246, 313, 427
LmnI	GCTCC	2 cut(s)	6, 76
LpnPI	CCDG	8 cut(s)	47, 47, 106, 207, 273, 344, 416, 423
Lsp1109I	GCAGC	2 cut(s)	124, 338
MalI	GATC	3 cut(s)	248, 315, 429
MboI	GATC	3 cut(s)	246, 313, 427
MboII	GAAGA	6 cut(s)	64, 67, 169, 284, 323, 410
MflI	RGATCY	1 cut(s)	313
MluCI	AATT	2 cut(s)	282, 410
MnlI	CCTC	9 cut(s)	42, 98, 155, 166, 188, 268, 313, 333, 472
MseI	TTAA	2 cut(s)	180, 413
MspI	CCGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	77, 109
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	3 cut(s)	246, 313, 427
NlaIII	CATG	2 cut(s)	257, 351
NspI	RCATGY	1 cut(s)	351
PkrI	GCNGC	2 cut(s)	139, 353
PspFI	CCCAGC	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	313
SaqAI	TTAA	2 cut(s)	180, 413
SatI	GCNGC	2 cut(s)	138, 352
Sau3AI	GATC	3 cut(s)	246, 313, 427
Sau96I	GGNCC	1 cut(s)	391
SetI	ASST	7 cut(s)	105, 126, 139, 177, 199, 223, 435
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	282, 410
SsiI	CCGC	2 cut(s)	130, 326
StyI	CCWWGG	1 cut(s)	378
TasI	AATT	2 cut(s)	282, 410
Tru1I	TTAA	2 cut(s)	180, 413
Tru9I	TTAA	2 cut(s)	180, 413
TseI	GCWGC	2 cut(s)	137, 351
XapI	RAATTY	1 cut(s)	282
XceI	RCATGY	1 cut(s)	351
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.