Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009526

Physical Location & Seq

Genomic Coordinates Reverse (-)

34210520 .. 34212226

Gene Structure 1707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1207900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGAAGCGATAGCGAAGTAGAGAAGTCAGCGCAGAAGGAGAGGGAGAAGAAGAAGCTGCAGGCTCTCGCTCCGGTAGCCAAACCGCTCGCCGGAAAGAAGCTCTGCAAACGAACCCTCAAGCTCGTCCGTAAAGCTGCTGAGCACAAATGCTTGAAGAGGGGAGTGAAAGAAGTGGTGAAAAGCATAAGGCGTGGTCAAAAGGGGTTTTGTGTTATAGCTGGGAACATTTCGCCTATTGATGTGATCACTCATGTTCCAATCTTATGTGAAGAGGCTGAAATTCCATATGTTTACGTGCCTTCAAAAGAAGATCTTGCAAATGCCGGTGCCACCAAGAGGCCAACCTGCTGTGTCCTGGTGACAACCAAGCCTAACAAGGGGGCACTCTCCCAAGAGGATGAAGATAAAATAAAGGAAAATTACGACGAAGTTGTAGGAGAGGTCAAAGAACTTCACGCCAACCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000469 GO:0000470 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016073 GO:0019538 GO:0022613 GO:0030515 GO:0031118 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034513 GO:0034641 GO:0034645 GO:0034660 GO:0040031 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

158

Amino Acids

17.31

Weight (kDa)

9.18

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	40 - 125	2.4e-25	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08180 AT5G08180
fragaria_vesca	FvH4_5g13030
malus_domestica	MD06G1207900.v1.1 MD14G1218300.v1.1
prunus_persica	Prupe.5G212100_v2.0.a1
pyrus_communis	pycom06g18580 pycom14g18100
rosa_chinensis	RchiOBHm_Chr7g0184101
rosa_laevigata	RLG00000005000 RLG00000021127
rosa_multiflora	Rmu_sc0004712.1_g000005 Rmu_sc0004712.1_g000006 Rmu_sc0004712.1_g000007 Rmu_sc0025350.1_g000010
rosa_roxburghii	Rroxscaffold_3G00269880
rosa_rugosa	Rorug06G0463000
rosa_samantha	Rh7AG082800 Rh7BG064200 Rh7DG064400
rosa_wichuraiana	Rw0G002480 Rw7G005280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	329
AccBSI	CCGCTC	1 cut(s)	88
AciI	CCGC	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	282
AfiI	CCNNNNNNNGG	3 cut(s)	92, 339, 380
AgsI	TTSAA	2 cut(s)	157, 306
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	5 cut(s)	58, 103, 124, 137, 221
AluI	AGCT	5 cut(s)	58, 103, 124, 137, 221
Alw21I	GWGCWC	1 cut(s)	147
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	58, 137
ApoI	RAATTY	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	190, 373
BaeGI	GKGCMC	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	45, 124
BciT130I	CCWGG	1 cut(s)	359
BclI	TGATCA	1 cut(s)	246
BfmI	CTRYAG	1 cut(s)	59
BfuAI	ACCTGC	1 cut(s)	356
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	2 cut(s)	59, 138
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	2 cut(s)	60, 139
Bme1390I	CCNGG	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	359
Bpu1102I	GCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	298
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 339, 380
Bse118I	RCCGGY	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	359
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	3 cut(s)	92, 339, 380
BseMII	CTCAG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	45, 124
BseYI	CCCAGC	1 cut(s)	221
BshFI	GGCC	1 cut(s)	343
BshNI	GGYRCC	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	3 cut(s)	74, 93, 327
BslI	CCNNNNNNNGG	3 cut(s)	92, 339, 380
BsnI	GGCC	1 cut(s)	343
Bsp1286I	GDGCHC	2 cut(s)	147, 388
Bsp143I	GATC	2 cut(s)	246, 313
Bsp1720I	GCTNAGC	1 cut(s)	141
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	331
BspMAI	CTGCAG	1 cut(s)	63
BspMI	ACCTGC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	326
BssMI	GATC	2 cut(s)	246, 313
Bst2UI	CCWGG	1 cut(s)	359
Bst6I	CTCTTC	2 cut(s)	152, 267
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	2 cut(s)	63, 90
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	406
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	249, 316
BstMBI	GATC	2 cut(s)	246, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	59
BstSLI	GKGCMC	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	45, 124
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	406
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	63, 90
CfoI	GCGC	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	326
CviAII	CATG	1 cut(s)	254
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	2 cut(s)	248, 315
DpnII	GATC	2 cut(s)	246, 313
Eam1104I	CTCTTC	2 cut(s)	152, 267
EarI	CTCTTC	2 cut(s)	152, 267
EcoRII	CCWGG	1 cut(s)	357
FaeI	CATG	1 cut(s)	257
FaiI	YATR	6 cut(s)	188, 218, 255, 268, 289, 291
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	1 cut(s)	253
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	59, 138
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	2 cut(s)	59, 138
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	2 cut(s)	59, 138
GsaI	CCCAGC	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	3 cut(s)	74, 93, 327
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	257
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HpaII	CCGG	3 cut(s)	74, 93, 327
HphI	GGTGA	2 cut(s)	190, 373
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	473
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	2 cut(s)	31, 312
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	61, 108, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	1 cut(s)	257
HspAI	GCGC	1 cut(s)	32
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	246, 313
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	8 cut(s)	47, 87, 106, 207, 340, 344, 361, 371
Lsp1109I	GCAGC	2 cut(s)	45, 124
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	2 cut(s)	248, 315
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	2 cut(s)	246, 313
MboII	GAAGA	6 cut(s)	61, 64, 169, 284, 323, 416
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	2 cut(s)	147, 388
MluCI	AATT	2 cut(s)	282, 421
MnlI	CCTC	7 cut(s)	36, 128, 153, 268, 333, 391, 436
MspI	CCGG	3 cut(s)	74, 93, 327
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	2 cut(s)	246, 313
NlaIII	CATG	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	60, 139
Ppu21I	YACGTR	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	357
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	331
PstI	CTGCAG	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	313
SatI	GCNGC	2 cut(s)	59, 138
Sau3AI	GATC	2 cut(s)	246, 313
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	2 cut(s)	147, 388
SetI	ASST	9 cut(s)	60, 105, 126, 139, 223, 300, 350, 447, 468
SfcI	CTRYAG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	282, 421
SsiI	CCGC	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	357
TaiI	ACGT	1 cut(s)	300
TasI	AATT	2 cut(s)	282, 421
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	2 cut(s)	58, 137
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	417
TspGWI	ACGGA	1 cut(s)	119
XapI	RAATTY	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.