Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009526

Physical Location & Seq

Genomic Coordinates Reverse (-)

30143515 .. 30145662

Gene Structure 2148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1218300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGAAGCGATAGCGAAGTCGAGAAGTCGGCGCAGAAGGAGAGGGAGAAGAAGAAGATGCAGGCTCTTGCTCCGATCGCCAAACCCCTCGCCGGAAAGAAGCTTTGTAAACGAACCCTCAAGCTCGTCCGTAAAGCTGCTGAGCACAAATGCTTGAAGAGGGGAGTGAAGGAGGTGGTGAAAAGCATCAGGCGCGGTCAAAAGGGGTTTTGTGTTATAGCTGGTAACATTTCTCCTATCGATGTGGTTACTCATGTTCCAATCTTATGTGAAGAGGCGGAAATTCCATATGTTTACGTGCCTTCAAAAGAAGATCTTGCAAATGCCGGTGCCACCAAGAGGCCAACCTGCTGTGTCCTGGTGACAACTAAGCCTAACAAGGGGGAACTATCCAAAGAGGATCAAGATAAAATAAAGGCAATTCACGACGAAGTTGTAGGAGACGTCAAAGAACTTCACGCCAACCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000469 GO:0000470 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016073 GO:0019538 GO:0022613 GO:0030515 GO:0031118 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034513 GO:0034641 GO:0034645 GO:0034660 GO:0040031 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

158

Amino Acids

17.28

Weight (kDa)

9.36

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	40 - 127	8.2e-26	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08180 AT5G08180
fragaria_vesca	FvH4_5g13030
malus_domestica	MD06G1207900.v1.1 MD14G1218300.v1.1
prunus_persica	Prupe.5G212100_v2.0.a1
pyrus_communis	pycom06g18580 pycom14g18100
rosa_chinensis	RchiOBHm_Chr7g0184101
rosa_laevigata	RLG00000005000 RLG00000021127
rosa_multiflora	Rmu_sc0004712.1_g000005 Rmu_sc0004712.1_g000006 Rmu_sc0004712.1_g000007 Rmu_sc0025350.1_g000010
rosa_roxburghii	Rroxscaffold_3G00269880
rosa_rugosa	Rorug06G0463000
rosa_samantha	Rh7AG082800 Rh7BG064200 Rh7DG064400
rosa_wichuraiana	Rw0G002480 Rw7G005280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	447
Acc36I	ACCTGC	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	329
AccII	CGCG	1 cut(s)	195
AciI	CCGC	2 cut(s)	195, 278
AclWI	GGATC	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	444
AfiI	CCNNNNNNNGG	3 cut(s)	92, 339, 380
AgsI	TTSAA	2 cut(s)	157, 306
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	4 cut(s)	103, 124, 137, 221
AluI	AGCT	4 cut(s)	103, 124, 137, 221
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	435
AlwI	GGATC	1 cut(s)	408
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	282
AspLEI	GCGC	2 cut(s)	34, 195
AsuHPI	GGTGA	2 cut(s)	190, 373
BanI	GGYRCC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	435
BfuAI	ACCTGC	1 cut(s)	356
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	1 cut(s)	138
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	2 cut(s)	48, 195
Bpu1102I	GCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	104
Bsa29I	ATCGAT	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	298
BsaHI	GRCGYC	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 339, 380
Bse118I	RCCGGY	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	359
BseCI	ATCGAT	1 cut(s)	240
BseLI	CCNNNNNNNGG	3 cut(s)	92, 339, 380
BseMII	CTCAG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	124
Bsh1236I	CGCG	1 cut(s)	195
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	343
BshNI	GGYRCC	1 cut(s)	329
BshVI	ATCGAT	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	2 cut(s)	93, 327
BslI	CCNNNNNNNGG	3 cut(s)	92, 339, 380
BsmAI	GTCTC	1 cut(s)	435
BsmBI	CGTCTC	1 cut(s)	435
BsnI	GGCC	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	3 cut(s)	75, 313, 400
Bsp1720I	GCTNAGC	1 cut(s)	141
BspACI	CCGC	2 cut(s)	195, 278
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	1 cut(s)	133
BspDI	ATCGAT	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	331
BspMI	ACCTGC	1 cut(s)	356
BspPI	GGATC	1 cut(s)	408
BspT107I	GGYRCC	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	326
BssMI	GATC	3 cut(s)	75, 313, 400
BssNI	GRCGYC	1 cut(s)	444
Bst2UI	CCWGG	1 cut(s)	359
Bst6I	CTCTTC	2 cut(s)	152, 267
BstACI	GRCGYC	1 cut(s)	444
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	2 cut(s)	141, 369
BstFNI	CGCG	1 cut(s)	195
BstHHI	GCGC	2 cut(s)	34, 195
BstKTI	GATC	3 cut(s)	78, 316, 403
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	3 cut(s)	75, 313, 400
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 192
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
Bsu15I	ATCGAT	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	343
BsuTUI	ATCGAT	1 cut(s)	240
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	63
CfoI	GCGC	2 cut(s)	34, 195
Cfr10I	RCCGGY	1 cut(s)	326
ClaI	ATCGAT	1 cut(s)	240
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	7 cut(s)	65, 103, 124, 137, 221, 343, 373
CviKI_1	RGCY	7 cut(s)	65, 103, 124, 137, 221, 343, 373
DdeI	CTNAG	2 cut(s)	141, 369
DpnI	GATC	3 cut(s)	77, 315, 402
DpnII	GATC	3 cut(s)	75, 313, 400
Eam1104I	CTCTTC	2 cut(s)	152, 267
EarI	CTCTTC	2 cut(s)	152, 267
EciI	GGCGGA	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	435
FaeI	CATG	1 cut(s)	257
FaiI	YATR	5 cut(s)	218, 255, 268, 289, 291
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	1 cut(s)	253
FauNDI	CATATG	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	138
GlaI	GCGC	2 cut(s)	33, 194
GluI	GCNGC	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	2 cut(s)	93, 327
HhaI	GCGC	2 cut(s)	34, 195
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	1 cut(s)	257
Hin6I	GCGC	2 cut(s)	32, 193
HinP1I	GCGC	2 cut(s)	32, 193
HindIII	AAGCTT	1 cut(s)	101
HpaII	CCGG	2 cut(s)	93, 327
HphI	GGTGA	2 cut(s)	190, 373
Hpy166II	GTNNAC	2 cut(s)	110, 295
Hpy188I	TCNGA	2 cut(s)	75, 473
Hpy188III	TCNNGA	3 cut(s)	22, 404, 425
Hpy8I	GTNNAC	2 cut(s)	110, 295
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	3 cut(s)	31, 163, 312
HpyCH4IV	ACGT	2 cut(s)	297, 444
HpyCH4V	TGCA	2 cut(s)	61, 320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 192
HpyF3I	CTNAG	2 cut(s)	141, 369
HpySE526I	ACGT	2 cut(s)	297, 444
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	1 cut(s)	257
HspAI	GCGC	2 cut(s)	32, 193
Kzo9I	GATC	3 cut(s)	75, 313, 400
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	8 cut(s)	47, 106, 175, 207, 340, 344, 361, 371
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	2 cut(s)	48, 195
MaeII	ACGT	2 cut(s)	297, 444
MaeIII	GTNAC	3 cut(s)	224, 247, 361
MalI	GATC	3 cut(s)	77, 315, 402
MboI	GATC	3 cut(s)	75, 313, 400
MboII	GAAGA	6 cut(s)	61, 64, 67, 169, 284, 323
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	2 cut(s)	282, 420
MnlI	CCTC	8 cut(s)	36, 98, 128, 153, 166, 268, 333, 391
MspI	CCGG	2 cut(s)	93, 327
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	77, 192
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	3 cut(s)	75, 313, 400
NlaIII	CATG	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	139
Ple19I	CGATCG	1 cut(s)	78
Ppu21I	YACGTR	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	313
PvuI	CGATCG	1 cut(s)	78
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	3 cut(s)	75, 313, 400
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	9 cut(s)	105, 126, 139, 177, 223, 300, 350, 447, 468
SfaNI	GCATC	2 cut(s)	48, 195
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	282, 420
SsiI	CCGC	2 cut(s)	195, 278
StyD4I	CCNGG	1 cut(s)	357
TaiI	ACGT	2 cut(s)	300, 447
TaqI	TCGA	2 cut(s)	21, 240
TasI	AATT	2 cut(s)	282, 420
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	361
TspGWI	ACGGA	1 cut(s)	119
XapI	RAATTY	1 cut(s)	282
ZraI	GACGTC	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.