Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009526

Physical Location & Seq

Genomic Coordinates Reverse (-)

16811602 .. 16813579

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G212100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGAAGCGATAGCGAAGTAGAGAAGACGGCGCAAAAGGAGAGGGAGAGGAAGAAGATGCAGGCTCTTGCTCCCATAGCCAAACCCCTTGCCGGCAAGAAGCTCTGCAAGCGAACCCTCAAGCTTGTCCGCAGAGCTGCTGAGAACAAATGCTTGAAGAGAGGAGTGAAGGAGGTAGTCAAAAGCATAAGGCGAGGCCAAAAGGGGTTATGTGTTATTGCTGGGAACATTTCTCCTATTGATGTGATCACTCATGTTCCAATCTTGTGTGAAGAGGCTGAAATTCCATATCTTTATGTGCCCTCAAAAGAAGATCTTGCAAATGCAGGGGCCACCAAGAGGCCAACTTGCTGTCTTCTGGTGATGACCAAGCCTTCCAAGGGGGAATTAGGCCAAGAGGAACAAGATAAACTAAAGGCAGATTATGACCAGGTTGTAGGAGATGTTTCTGAACTTCAATCCTCCCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000469 GO:0000470 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016073 GO:0019538 GO:0022613 GO:0030515 GO:0031118 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034513 GO:0034641 GO:0034645 GO:0034660 GO:0040031 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

158

Amino Acids

17.29

Weight (kDa)

9.22

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08180 AT5G08180
fragaria_vesca	FvH4_5g13030
malus_domestica	MD06G1207900.v1.1 MD14G1218300.v1.1
prunus_persica	Prupe.5G212100_v2.0.a1
pyrus_communis	pycom06g18580 pycom14g18100
rosa_chinensis	RchiOBHm_Chr7g0184101
rosa_laevigata	RLG00000005000 RLG00000021127
rosa_multiflora	Rmu_sc0004712.1_g000005 Rmu_sc0004712.1_g000006 Rmu_sc0004712.1_g000007 Rmu_sc0025350.1_g000010
rosa_roxburghii	Rroxscaffold_3G00269880
rosa_rugosa	Rorug06G0463000
rosa_samantha	Rh7AG082800 Rh7BG064200 Rh7DG064400
rosa_wichuraiana	Rw0G002480 Rw7G005280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	282
AfiI	CCNNNNNNNGG	3 cut(s)	92, 339, 380
AgsI	TTSAA	2 cut(s)	157, 458
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	3 cut(s)	103, 124, 137
AluI	AGCT	3 cut(s)	103, 124, 137
AoxI	GGCC	4 cut(s)	196, 330, 341, 391
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	373
BaeGI	GKGCMC	1 cut(s)	303
BbsI	GAAGAC	2 cut(s)	32, 347
BbvI	GCAGC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	45
BciT130I	CCWGG	1 cut(s)	431
BclI	TGATCA	1 cut(s)	246
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	431
BmsI	GCATC	1 cut(s)	48
BpiI	GAAGAC	2 cut(s)	32, 347
BpuEI	CTTGAG	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 339, 380
Bse118I	RCCGGY	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	378
BseLI	CCNNNNNNNGG	3 cut(s)	92, 339, 380
BseMII	CTCAG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	177
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	124
BseYI	CCCAGC	1 cut(s)	221
BshFI	GGCC	4 cut(s)	198, 332, 343, 393
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	3 cut(s)	92, 339, 380
BsnI	GGCC	4 cut(s)	198, 332, 343, 393
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	246, 313
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	4 cut(s)	198, 332, 343, 393
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	331
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	2 cut(s)	246, 313
BssT1I	CCWWGG	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	431
Bst6I	CTCTTC	2 cut(s)	152, 267
BstC8I	GCNNGC	3 cut(s)	63, 94, 110
BstDEI	CTNAG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	249, 316
BstMBI	GATC	2 cut(s)	246, 313
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 109
BstNI	CCWGG	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	2 cut(s)	32, 347
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	4 cut(s)	198, 332, 343, 393
Cac8I	GCNNGC	3 cut(s)	63, 94, 110
CfoI	GCGC	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	330
CsiI	ACCWGGT	1 cut(s)	429
CviAII	CATG	1 cut(s)	254
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	2 cut(s)	248, 315
DpnII	GATC	2 cut(s)	246, 313
Eam1104I	CTCTTC	2 cut(s)	152, 267
EarI	CTCTTC	2 cut(s)	152, 267
Eco130I	CCWWGG	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	1 cut(s)	257
FaiI	YATR	7 cut(s)	77, 188, 211, 255, 289, 297, 426
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	1 cut(s)	253
FbaI	TGATCA	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	138
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	138
GsaI	CCCAGC	1 cut(s)	225
HaeIII	GGCC	4 cut(s)	198, 332, 343, 393
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	257
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HindIII	AAGCTT	1 cut(s)	122
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	373
Hpy188I	TCNGA	2 cut(s)	451, 473
HpyAV	CCTTC	2 cut(s)	163, 384
HpyCH4V	TGCA	4 cut(s)	61, 108, 320, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 109
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	257
HspAI	GCGC	1 cut(s)	32
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	246, 313
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	7 cut(s)	47, 106, 207, 312, 344, 416, 443
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	48
MabI	ACCWGGT	1 cut(s)	429
MalI	GATC	2 cut(s)	248, 315
MboI	GATC	2 cut(s)	246, 313
MboII	GAAGA	7 cut(s)	37, 64, 67, 169, 284, 323, 347
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	2 cut(s)	282, 386
MroNI	GCCGGC	1 cut(s)	92
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	431
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	2 cut(s)	77, 109
NaeI	GCCGGC	1 cut(s)	94
NdeII	GATC	2 cut(s)	246, 313
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	331
PdiI	GCCGGC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	429
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	330
PsuI	RGATCY	1 cut(s)	313
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	2 cut(s)	246, 313
Sau96I	GGNCC	1 cut(s)	330
ScrFI	CCNGG	1 cut(s)	431
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	5 cut(s)	105, 126, 139, 177, 435
SexAI	ACCWGGT	1 cut(s)	429
SfaNI	GCATC	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	282, 386
SsiI	CCGC	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	429
StyI	CCWWGG	1 cut(s)	378
TasI	AATT	2 cut(s)	282, 386
TseI	GCWGC	1 cut(s)	137
XapI	RAATTY	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.