AT5G08391

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017879
Physical Location & Seq
Forward (+)
2699158 .. 2699784
627 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G08391.1

Sequence Viewer

Length: 210 bp
ATGTCGGATTGGGGACCGGTGCTAGTTACGGTGATACTCTTCGTGATGCTTACGCCAGGGCTTCTGTTTCAGTTGCCGGGACGACAAAAGTACGTTGAGTTTGGTAATTTTCAGACAAGCGCTGTCTCCGTTATCGTCCATTCTCTTCTCTACTTCTCCCTTGTTTGCGTCTTCCTTCTCGCACTCAAGATTCACATCTACATCGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

69

Amino Acids

7.74

Weight (kDa)

7.94

Isoelectric Point (pI)

24.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 67 9.7e-34 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08391
malus_domestica MD13G1121300.v1.1 MD16G1121600.v1.1
prunus_persica Prupe.1G223900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0429951
rosa_laevigata RLG00000007018
rosa_multiflora Rmu_co8441175.1_g000001 Rmu_ssc0000150.1_g000039
rosa_roxburghii Rroxscaffold_5G00371780
rosa_rugosa Rorug04G0239600
rosa_wichuraiana Rw4G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 92
AfeI AGCGCT 1 cut(s) 121
AgeI ACCGGT 1 cut(s) 16
AjnI CCWGG 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 130
Aor51HI AGCGCT 1 cut(s) 121
AsiGI ACCGGT 1 cut(s) 16
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 43
AvaII GGWCC 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 57
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 1 cut(s) 23
BfoI RGCGCY 1 cut(s) 123
Bme1390I CCNGG 2 cut(s) 57, 78
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 2 cut(s) 57, 78
BmsI GCATC 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 163
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 78
BsaBI GATNNNNATC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 56
BsaWI WCCGGW 1 cut(s) 16
Bse118I RCCGGY 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 194
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 56
BseJI GATNNNNATC 1 cut(s) 194
BshTI ACCGGT 1 cut(s) 16
BsiSI CCGG 2 cut(s) 17, 77
BslFI GGGAC 2 cut(s) 27, 93
BsmAI GTCTC 1 cut(s) 130
BsmFI GGGAC 2 cut(s) 27, 93
BspLI GGNNCC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 2 cut(s) 44, 150
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 1 cut(s) 122
BstMAI GTCTC 1 cut(s) 130
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 2 cut(s) 55, 76
BstV2I GAAGAC 1 cut(s) 163
CfoI GCGC 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 91
CspAI ACCGGT 1 cut(s) 16
CviJI RGCY 2 cut(s) 61, 207
CviKI_1 RGCY 2 cut(s) 61, 207
CviQI GTAC 1 cut(s) 91
Eam1104I CTCTTC 2 cut(s) 44, 150
EarI CTCTTC 2 cut(s) 44, 150
Eco47I GGWCC 1 cut(s) 14
Eco47III AGCGCT 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 55
FaqI GGGAC 2 cut(s) 27, 93
FspBI CTAG 1 cut(s) 23
GlaI GCGC 1 cut(s) 121
HaeII RGCGCY 1 cut(s) 123
HapII CCGG 2 cut(s) 17, 77
HgaI GACGC 1 cut(s) 157
HhaI GCGC 1 cut(s) 122
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 1 cut(s) 190
HpaII CCGG 2 cut(s) 17, 77
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 7, 114
Hpy188III TCNNGA 2 cut(s) 43, 187
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 93
HspAI GCGC 1 cut(s) 120
LpnPI CCDG 4 cut(s) 30, 42, 69, 90
LweI GCATC 1 cut(s) 36
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 25
MboII GAAGA 3 cut(s) 31, 137, 163
MluCI AATT 1 cut(s) 106
MspI CCGG 2 cut(s) 17, 77
MspR9I CCNGG 2 cut(s) 57, 78
MvaI CCWGG 1 cut(s) 57
NciI CCSGG 1 cut(s) 78
NlaIV GGNNCC 1 cut(s) 15
PfeI GAWTC 1 cut(s) 190
PinAI ACCGGT 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 14
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 57, 78
SetI ASST 1 cut(s) 96
SfaNI GCATC 1 cut(s) 36
SinI GGWCC 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 1 cut(s) 106
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 2 cut(s) 55, 76
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 96
TasI AATT 1 cut(s) 106
TfiI GAWTC 1 cut(s) 190
TspGWI ACGGA 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 14
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.