Rmu_ssc0000150.1_g000039

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000150.1
OG0017879
Physical Location & Seq
Forward (+)
202536 .. 204571
2036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000150.1_g000039.1.cds

Sequence Viewer

Length: 327 bp
atgtctgattggggaccggtgtttattgcggtggtgctgttcgtgctgttgtcgccaggtctgctgttccaggtgccggggcagcacgggtgcgtggagtttggaagctttcacacgagcggcgcagccataatggttcactccctcctctactttgctctcatttgcgtcttcttgttggccattaagctgccggggaagagcagagtggtggagtttggcaacatgcaaaccagtggactatccatcctcgtccacaccatcatcttctttggcctcatcaccatcttcctcatcgccattggcgttcacatctgcactggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

108

Amino Acids

11.61

Weight (kDa)

6.94

Isoelectric Point (pI)

23.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08391
malus_domestica MD13G1121300.v1.1 MD16G1121600.v1.1
prunus_persica Prupe.1G223900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0429951
rosa_laevigata RLG00000007018
rosa_multiflora Rmu_co8441175.1_g000001 Rmu_ssc0000150.1_g000039
rosa_roxburghii Rroxscaffold_5G00371780
rosa_rugosa Rorug04G0239600
rosa_wichuraiana Rw4G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AccBSI CCGCTC 1 cut(s) 120
AciI CCGC 2 cut(s) 29, 120
AcoI YGGCCR 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 76
AgeI ACCGGT 1 cut(s) 16
AjnI CCWGG 2 cut(s) 55, 69
AluBI AGCT 2 cut(s) 108, 190
AluI AGCT 2 cut(s) 108, 190
AoxI GGCC 2 cut(s) 180, 274
ApeKI GCWGC 3 cut(s) 82, 125, 190
AsiGI ACCGGT 1 cut(s) 16
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 2 cut(s) 78, 195
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 14
BalI TGGCCA 1 cut(s) 182
BanI GGYRCC 1 cut(s) 73
BauI CACGAG 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 163
BbvI GCAGC 3 cut(s) 94, 137, 177
BccI CCATC 3 cut(s) 254, 269, 293
BciT130I CCWGG 2 cut(s) 57, 71
BcnI CCSGG 2 cut(s) 78, 195
BisI GCNGC 4 cut(s) 83, 121, 126, 191
BlsI GCNGC 4 cut(s) 84, 122, 127, 192
Bme1390I CCNGG 4 cut(s) 57, 71, 78, 195
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 15, 75
BmrFI CCNGG 4 cut(s) 57, 71, 78, 195
BpiI GAAGAC 1 cut(s) 163
BpuMI CCSGG 2 cut(s) 78, 195
BsaJI CCNNGG 2 cut(s) 77, 194
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 234, 325
BseBI CCWGG 2 cut(s) 57, 71
BseDI CCNNGG 2 cut(s) 77, 194
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 76
BseNI ACTGG 2 cut(s) 234, 325
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 3 cut(s) 94, 137, 177
BsgI GTGCAG 1 cut(s) 301
BshFI GGCC 2 cut(s) 182, 276
BshNI GGYRCC 1 cut(s) 73
BshTI ACCGGT 1 cut(s) 16
BsiSI CCGG 3 cut(s) 17, 77, 194
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 2 cut(s) 182, 276
BspACI CCGC 2 cut(s) 29, 120
BspANI GGCC 2 cut(s) 182, 276
BspLI GGNNCC 2 cut(s) 15, 75
BspQI GCTCTTC 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 73
BsrBI CCGCTC 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 2 cut(s) 234, 325
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 77, 194
BssSI CACGAG 1 cut(s) 115
Bst2BI CACGAG 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 57, 71
Bst6I CTCTTC 1 cut(s) 194
BstF5I GGATG 1 cut(s) 246
BstHHI GCGC 1 cut(s) 125
BstMWI GCNNNNNNNGC 4 cut(s) 43, 52, 61, 82
BstNI CCWGG 2 cut(s) 57, 71
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 4 cut(s) 55, 69, 76, 193
BstV1I GCAGC 3 cut(s) 94, 137, 177
BstV2I GAAGAC 1 cut(s) 163
BsuRI GGCC 2 cut(s) 182, 276
BtgZI GCGATG 1 cut(s) 280
BtsCI GGATG 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 241, 318
CfoI GCGC 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 1 cut(s) 157
CspAI ACCGGT 1 cut(s) 16
CviAII CATG 1 cut(s) 226
CviJI RGCY 5 cut(s) 108, 128, 182, 190, 276
CviKI_1 RGCY 5 cut(s) 108, 128, 182, 190, 276
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 14
EcoRII CCWGG 2 cut(s) 55, 69
FaeI CATG 1 cut(s) 229
FaiI YATR 2 cut(s) 131, 227
FaqI GGGAC 1 cut(s) 27
FatI CATG 1 cut(s) 225
Fnu4HI GCNGC 4 cut(s) 83, 121, 126, 191
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 4 cut(s) 83, 121, 126, 191
GlaI GCGC 1 cut(s) 124
GluI GCNGC 4 cut(s) 83, 121, 126, 191
HaeIII GGCC 2 cut(s) 182, 276
HapII CCGG 3 cut(s) 17, 77, 194
HgaI GACGC 1 cut(s) 157
HhaI GCGC 1 cut(s) 125
Hin1II CATG 1 cut(s) 229
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HindIII AAGCTT 1 cut(s) 106
HpaII CCGG 3 cut(s) 17, 77, 194
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 4 cut(s) 139, 239, 256, 310
Hpy188I TCNGA 1 cut(s) 7
Hpy8I GTNNAC 4 cut(s) 139, 239, 256, 310
HpyCH4V TGCA 2 cut(s) 229, 318
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 52, 61, 82
Hsp92II CATG 1 cut(s) 229
HspAI GCGC 1 cut(s) 123
LguI GCTCTTC 1 cut(s) 194
LpnPI CCDG 9 cut(s) 30, 42, 56, 69, 83, 90, 207, 247, 306
Lsp1109I GCAGC 3 cut(s) 94, 137, 177
MbiI CCGCTC 1 cut(s) 120
MboII GAAGA 4 cut(s) 163, 211, 259, 280
MlsI TGGCCA 1 cut(s) 182
MluNI TGGCCA 1 cut(s) 182
MnlI CCTC 5 cut(s) 155, 158, 260, 287, 302
Mox20I TGGCCA 1 cut(s) 182
MscI TGGCCA 1 cut(s) 182
MseI TTAA 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 182
MspI CCGG 3 cut(s) 17, 77, 194
MspR9I CCNGG 4 cut(s) 57, 71, 78, 195
MvaI CCWGG 2 cut(s) 57, 71
MwoI GCNNNNNNNGC 4 cut(s) 43, 52, 61, 82
NciI CCSGG 2 cut(s) 78, 195
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 2 cut(s) 15, 75
NspI RCATGY 1 cut(s) 229
PciSI GCTCTTC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PinAI ACCGGT 1 cut(s) 16
PkrI GCNGC 4 cut(s) 84, 122, 127, 192
Psp6I CCWGG 2 cut(s) 55, 69
PspGI CCWGG 2 cut(s) 55, 69
PspN4I GGNNCC 2 cut(s) 15, 75
PspPI GGNCC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 194
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 4 cut(s) 83, 121, 126, 191
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 4 cut(s) 57, 71, 78, 195
SetI ASST 4 cut(s) 61, 75, 110, 192
SinI GGWCC 1 cut(s) 14
SsiI CCGC 2 cut(s) 29, 120
StyD4I CCNGG 4 cut(s) 55, 69, 76, 193
TauI GCSGC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 2 cut(s) 241, 325
TseI GCWGC 3 cut(s) 82, 125, 190
TspRI CASTG 2 cut(s) 241, 325
VpaK11BI GGWCC 1 cut(s) 14
XceI RCATGY 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.