Rmu_co8441175.1_g000001

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8441175.1
OG0017879
Physical Location & Seq
Reverse (-)
1 .. 790
790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8441175.1_g000001.1.cds

Sequence Viewer

Length: 189 bp
atgtctgattggggaccggtgtttattgcggtggtgctgttcgtgctgttgtcgccaggtctgctgttccaggtgccggggcagcacgggtgcgtggagtttggaagctttcacacgagcggcgcagccataatggttcactccctcctctactttgctctcatttgcgtcttcttgttggccattaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

63

Amino Acids

6.81

Weight (kDa)

6.21

Isoelectric Point (pI)

19.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08391
malus_domestica MD13G1121300.v1.1 MD16G1121600.v1.1
prunus_persica Prupe.1G223900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0429951
rosa_laevigata RLG00000007018
rosa_multiflora Rmu_co8441175.1_g000001 Rmu_ssc0000150.1_g000039
rosa_roxburghii Rroxscaffold_5G00371780
rosa_rugosa Rorug04G0239600
rosa_wichuraiana Rw4G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AccBSI CCGCTC 1 cut(s) 120
AciI CCGC 2 cut(s) 29, 120
AcoI YGGCCR 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 76
AgeI ACCGGT 1 cut(s) 16
AjnI CCWGG 2 cut(s) 55, 69
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 2 cut(s) 82, 125
AsiGI ACCGGT 1 cut(s) 16
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 1 cut(s) 78
AvaII GGWCC 1 cut(s) 14
BalI TGGCCA 1 cut(s) 182
BanI GGYRCC 1 cut(s) 73
BauI CACGAG 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 163
BbvI GCAGC 2 cut(s) 94, 137
BciT130I CCWGG 2 cut(s) 57, 71
BcnI CCSGG 1 cut(s) 78
BisI GCNGC 3 cut(s) 83, 121, 126
BlsI GCNGC 3 cut(s) 84, 122, 127
Bme1390I CCNGG 3 cut(s) 57, 71, 78
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 15, 75
BmrFI CCNGG 3 cut(s) 57, 71, 78
BpiI GAAGAC 1 cut(s) 163
BpuMI CCSGG 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 16
BseBI CCWGG 2 cut(s) 57, 71
BseDI CCNNGG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 94, 137
BshFI GGCC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 73
BshTI ACCGGT 1 cut(s) 16
BsiSI CCGG 2 cut(s) 17, 77
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 1 cut(s) 182
BspACI CCGC 2 cut(s) 29, 120
BspANI GGCC 1 cut(s) 182
BspLI GGNNCC 2 cut(s) 15, 75
BspT107I GGYRCC 1 cut(s) 73
BsrBI CCGCTC 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 77
BssSI CACGAG 1 cut(s) 115
Bst2BI CACGAG 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 57, 71
BstHHI GCGC 1 cut(s) 125
BstMWI GCNNNNNNNGC 4 cut(s) 43, 52, 61, 82
BstNI CCWGG 2 cut(s) 57, 71
BstSCI CCNGG 3 cut(s) 55, 69, 76
BstV1I GCAGC 2 cut(s) 94, 137
BstV2I GAAGAC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 182
CfoI GCGC 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 1 cut(s) 157
CspAI ACCGGT 1 cut(s) 16
CviJI RGCY 3 cut(s) 108, 128, 182
CviKI_1 RGCY 3 cut(s) 108, 128, 182
EaeI YGGCCR 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 14
EcoRII CCWGG 2 cut(s) 55, 69
FaiI YATR 1 cut(s) 131
FaqI GGGAC 1 cut(s) 27
Fnu4HI GCNGC 3 cut(s) 83, 121, 126
Fsp4HI GCNGC 3 cut(s) 83, 121, 126
GlaI GCGC 1 cut(s) 124
GluI GCNGC 3 cut(s) 83, 121, 126
HaeIII GGCC 1 cut(s) 182
HapII CCGG 2 cut(s) 17, 77
HgaI GACGC 1 cut(s) 157
HhaI GCGC 1 cut(s) 125
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HindIII AAGCTT 1 cut(s) 106
HpaII CCGG 2 cut(s) 17, 77
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 7
Hpy8I GTNNAC 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 52, 61, 82
HspAI GCGC 1 cut(s) 123
LpnPI CCDG 6 cut(s) 30, 42, 56, 69, 83, 90
Lsp1109I GCAGC 2 cut(s) 94, 137
MbiI CCGCTC 1 cut(s) 120
MboII GAAGA 1 cut(s) 163
MlsI TGGCCA 1 cut(s) 182
MluNI TGGCCA 1 cut(s) 182
MnlI CCTC 2 cut(s) 155, 158
Mox20I TGGCCA 1 cut(s) 182
MscI TGGCCA 1 cut(s) 182
MseI TTAA 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 182
MspI CCGG 2 cut(s) 17, 77
MspR9I CCNGG 3 cut(s) 57, 71, 78
MvaI CCWGG 2 cut(s) 57, 71
MwoI GCNNNNNNNGC 4 cut(s) 43, 52, 61, 82
NciI CCSGG 1 cut(s) 78
NlaIV GGNNCC 2 cut(s) 15, 75
PinAI ACCGGT 1 cut(s) 16
PkrI GCNGC 3 cut(s) 84, 122, 127
Psp6I CCWGG 2 cut(s) 55, 69
PspGI CCWGG 2 cut(s) 55, 69
PspN4I GGNNCC 2 cut(s) 15, 75
PspPI GGNCC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 3 cut(s) 83, 121, 126
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 57, 71, 78
SetI ASST 3 cut(s) 61, 75, 110
SinI GGWCC 1 cut(s) 14
SsiI CCGC 2 cut(s) 29, 120
StyD4I CCNGG 3 cut(s) 55, 69, 76
TauI GCSGC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseI GCWGC 2 cut(s) 82, 125
VpaK11BI GGWCC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.