Prupe.1G223900_v2.0.a1

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017879
Physical Location & Seq
Reverse (-)
23769390 .. 23770047
658 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G223900.1

Sequence Viewer

Length: 210 bp
ATGTCTGATTGGGGCCCGGTGTTCGTGGCAGTGGTTCTGTTTGTGCTGTTGTCTCCAGGTCTGCTTTTCCAGTTGCCTGGGCGCCATGGCTGCGTGGAGTTTGGGGGCTTTCAAACAAGTGGTGCAGCCATCATGGTTCACTCCCTCCTCTACTTTGCTCTCATTTGCGTCTTCTTGTTGGCCATCAAGGTCCATTTTTACCTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

70

Amino Acids

7.51

Weight (kDa)

6.8

Isoelectric Point (pI)

27.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08391
malus_domestica MD13G1121300.v1.1 MD16G1121600.v1.1
prunus_persica Prupe.1G223900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0429951
rosa_laevigata RLG00000007018
rosa_multiflora Rmu_co8441175.1_g000001 Rmu_ssc0000150.1_g000039
rosa_roxburghii Rroxscaffold_5G00371780
rosa_rugosa Rorug04G0239600
rosa_wichuraiana Rw4G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AcoI YGGCCR 1 cut(s) 180
AcyI GRCGYC 1 cut(s) 82
AgsI TTSAA 1 cut(s) 113
AjnI CCWGG 2 cut(s) 55, 76
Alw26I GTCTC 1 cut(s) 57
AoxI GGCC 2 cut(s) 13, 180
ApaI GGGCCC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 90, 125
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 3 cut(s) 13, 14, 190
AsuC2I CCSGG 1 cut(s) 17
AvaII GGWCC 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 17
BalI TGGCCA 1 cut(s) 182
BanI GGYRCC 1 cut(s) 81
BanII GRGCYC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 163
BbvI GCAGC 2 cut(s) 77, 137
BccI CCATC 2 cut(s) 137, 191
BciT130I CCWGG 2 cut(s) 57, 78
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 2 cut(s) 91, 126
BlsI GCNGC 2 cut(s) 92, 127
Bme1390I CCNGG 3 cut(s) 17, 57, 78
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 3 cut(s) 13, 14, 190
BmiI GGNNCC 3 cut(s) 14, 15, 83
BmrFI CCNGG 3 cut(s) 17, 57, 78
BpiI GAAGAC 1 cut(s) 163
BpmI CTGGAG 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 17
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 3 cut(s) 77, 85, 202
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 2 cut(s) 57, 78
BseDI CCNNGG 3 cut(s) 77, 85, 202
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 2 cut(s) 77, 137
BsgI GTGCAG 1 cut(s) 144
BshFI GGCC 2 cut(s) 15, 182
BshNI GGYRCC 1 cut(s) 81
BsiSI CCGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 57
BsnI GGCC 2 cut(s) 15, 182
Bsp120I GGGCCC 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 17
Bsp19I CCATGG 1 cut(s) 85
BspANI GGCC 2 cut(s) 15, 182
BspLI GGNNCC 3 cut(s) 14, 15, 83
BspT107I GGYRCC 1 cut(s) 81
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 3 cut(s) 77, 85, 202
BssNI GRCGYC 1 cut(s) 82
BssT1I CCWWGG 2 cut(s) 85, 202
Bst2UI CCWGG 2 cut(s) 57, 78
BstACI GRCGYC 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 85
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 2 cut(s) 57, 78
BstSCI CCNGG 3 cut(s) 15, 55, 76
BstSLI GKGCMC 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 77, 137
BstV2I GAAGAC 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 77
BsuRI GGCC 2 cut(s) 15, 182
BtgI CCRYGG 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
CfoI GCGC 1 cut(s) 84
Cfr13I GGNCC 3 cut(s) 13, 14, 190
CseI GACGC 1 cut(s) 157
CviAII CATG 2 cut(s) 86, 133
CviJI RGCY 5 cut(s) 15, 90, 108, 128, 182
CviKI_1 RGCY 5 cut(s) 15, 90, 108, 128, 182
DinI GGCGCC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 180
Eco130I CCWWGG 2 cut(s) 85, 202
Eco24I GRGCYC 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 13
EcoRII CCWGG 2 cut(s) 55, 76
EcoT14I CCWWGG 2 cut(s) 85, 202
EcoT38I GRGCYC 1 cut(s) 17
EgeI GGCGCC 1 cut(s) 83
EheI GGCGCC 1 cut(s) 83
ErhI CCWWGG 2 cut(s) 85, 202
FaeI CATG 2 cut(s) 89, 136
FaiI YATR 2 cut(s) 87, 134
FatI CATG 2 cut(s) 85, 132
Fnu4HI GCNGC 2 cut(s) 91, 126
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 91, 126
GlaI GCGC 1 cut(s) 83
GluI GCNGC 2 cut(s) 91, 126
GsuI CTGGAG 1 cut(s) 39
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 2 cut(s) 15, 182
HapII CCGG 1 cut(s) 17
HgaI GACGC 1 cut(s) 157
HhaI GCGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 2 cut(s) 89, 136
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HpaII CCGG 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 7
Hpy8I GTNNAC 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 2 cut(s) 89, 136
HspAI GCGC 1 cut(s) 82
KasI GGCGCC 1 cut(s) 81
LpnPI CCDG 6 cut(s) 30, 42, 63, 69, 83, 90
Lsp1109I GCAGC 2 cut(s) 77, 137
MboII GAAGA 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 17
MlsI TGGCCA 1 cut(s) 182
MluNI TGGCCA 1 cut(s) 182
Mly113I GGCGCC 1 cut(s) 82
MnlI CCTC 2 cut(s) 155, 158
Mox20I TGGCCA 1 cut(s) 182
MscI TGGCCA 1 cut(s) 182
MseI TTAA 1 cut(s) 208
Msp20I TGGCCA 1 cut(s) 182
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 3 cut(s) 17, 57, 78
MvaI CCWGG 2 cut(s) 57, 78
MwoI GCNNNNNNNGC 1 cut(s) 90
NarI GGCGCC 1 cut(s) 82
NciI CCSGG 1 cut(s) 17
NcoI CCATGG 1 cut(s) 85
NlaIII CATG 2 cut(s) 89, 136
NlaIV GGNNCC 3 cut(s) 14, 15, 83
PkrI GCNGC 2 cut(s) 92, 127
PluTI GGCGCC 1 cut(s) 85
Psp6I CCWGG 2 cut(s) 55, 76
PspGI CCWGG 2 cut(s) 55, 76
PspN4I GGNNCC 3 cut(s) 14, 15, 83
PspOMI GGGCCC 1 cut(s) 13
PspPI GGNCC 3 cut(s) 13, 14, 190
SaqAI TTAA 1 cut(s) 208
SatI GCNGC 2 cut(s) 91, 126
Sau96I GGNCC 3 cut(s) 13, 14, 190
ScrFI CCNGG 3 cut(s) 17, 57, 78
SduI GDGCHC 1 cut(s) 17
SetI ASST 3 cut(s) 61, 192, 204
SfoI GGCGCC 1 cut(s) 83
SinI GGWCC 1 cut(s) 190
SspDI GGCGCC 1 cut(s) 81
StyD4I CCNGG 3 cut(s) 15, 55, 76
StyI CCWWGG 2 cut(s) 85, 202
Tru1I TTAA 1 cut(s) 208
Tru9I TTAA 1 cut(s) 208
TscAI CASTG 1 cut(s) 36
TseI GCWGC 2 cut(s) 90, 125
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 190
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.