Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016489

Physical Location & Seq

Genomic Coordinates Forward (+)

3052062 .. 3054691

Gene Structure 2630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTTGGTCGTCCTAGGCACACTGGTGTCATGGTTGGTATGGGTCAGAAAGATGCTTACGTTGGTGATGAAGCTCAGTCCAAGAGAGGTATCCTCACTCTGAAGTATCCAATCGAACATGGTATTGTAAGTAACTGGGATGACATGGAAAAGATATGGCATCACACTTTCTACAACGAGCTTCGTGTTGCCCCTGAGGAGCACCCAGTTCTACTCACAGAGGCACCTCTTAACCCTAAAGCTAACAGGGAGAAGATGACTCAGATCATGTTTGAGACATTCAATGTCCCTGCCATGTATGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCGGGATCTCACAGACTCACTCATGAAGATTCTCACTGAGAGAGGTTACATGTTCACCACTACCGCAGAACGGGAAATTGTCCGTGACATAAAGGAGAAACTTGCTTATGTCGCTCTTGACTACGAGCAAGAGCTAGAGACAGCCAAGAGCAGTTCTTCAGTGGAGAAGAACTACGAGCTACCTGATGGACAAGTCATAACCATCGGAGCTGAGAGATTCCGTTGTCCTGAGGTTCTGTTCCAGCCATCGCTCATCGGAATGGAAGCTCCTGGAATCCATGAAACAACTTACAACTCCATCATGAAATGTGATGTCGATATCAGGAAGGATCTCTATGGAAACATCGTTCTCAGTGGTGGTTCCACCATGTTCCCAGGAATTGCTGACCGTATGAGCAAAGAGATCACCGCTCTTGCACCTAGCAGCATGAAGATCAAGGTGGTTGCACCGCCAGAGAGAAAATACAGTGTCTGGATCGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGATGTGGATTTCAAAGAGTGAGTACGATGAGTCAGGTCCATCGATTGTTCACAGGAAATGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006950 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009611 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009845 GO:0009888 GO:0009941 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030312 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051301 GO:0055044 GO:0060560 GO:0070013 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090351 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

377

Amino Acids

41.74

Weight (kDa)

5.31

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	5 - 377	6.9e-147	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09810
fragaria_vesca	FvH4_1g23490
malus_domestica	MD01G1001600.v1.1
prunus_persica	Prupe.6G163400_v2.0.a1 Prupe.6G163400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118891
rosa_laevigata	RLG00000018431
rosa_multiflora	Rmu_sc0001653.1_g000037
rosa_roxburghii	Rroxscaffold_2G00124610
rosa_rugosa	Rorug02G0219400
rosa_samantha	Rh2BG288200 Rh2DG283400 Rh2DG302700
rosa_wichuraiana	Rw2G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AccBSI	CCGCTC	1 cut(s)	962
AciI	CCGC	4 cut(s)	548, 615, 960, 1001
AclWI	GGATC	4 cut(s)	564, 888, 1034, 1042
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	227, 693
AdeI	CACNNNGTG	1 cut(s)	493
AfaI	GTAC	2 cut(s)	448, 1091
AfiI	CCNNNNNNNGG	1 cut(s)	621
AflIII	ACRYGT	1 cut(s)	600
AgeI	ACCGGT	1 cut(s)	452
AgsI	TTSAA	2 cut(s)	388, 1080
AjnI	CCWGG	2 cut(s)	820, 925
AleI	CACNNNNGTG	1 cut(s)	129
AloI	GAACNNNNNNTCC	2 cut(s)	882, 914
AluBI	AGCT	7 cut(s)	179, 286, 347, 685, 730, 761, 818
AluI	AGCT	7 cut(s)	179, 286, 347, 685, 730, 761, 818
Alw21I	GWGCWC	2 cut(s)	309, 465
Alw26I	GTCTC	3 cut(s)	374, 489, 683
AlwI	GGATC	4 cut(s)	564, 888, 1034, 1042
AlwNI	CAGNNNCTG	1 cut(s)	1023
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	2 cut(s)	3, 417
ApeKI	GCWGC	1 cut(s)	975
AsiGI	ACCGGT	1 cut(s)	452
Asp700I	GAANNNNTTC	1 cut(s)	1127
AspA2I	CCTAGG	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	1103
AsuHPI	GGTGA	7 cut(s)	23, 67, 86, 182, 485, 598, 949
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	1103
AvrII	CCTAGG	1 cut(s)	119
AxyI	CCTNAGG	2 cut(s)	300, 780
BanI	GGYRCC	1 cut(s)	328
Bbv12I	GWGCWC	2 cut(s)	309, 465
BbvCI	CCTCAGC	1 cut(s)	1052
BbvI	GCAGC	1 cut(s)	987
BccI	CCATC	7 cut(s)	2, 470, 731, 761, 805, 857, 1114
BceAI	ACGGC	1 cut(s)	404
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BciT130I	CCWGG	2 cut(s)	822, 927
BciVI	GTATCC	2 cut(s)	206, 222
BcoDI	GTCTC	3 cut(s)	374, 489, 683
BfaI	CTAG	3 cut(s)	120, 686, 972
BfuI	GTATCC	2 cut(s)	206, 222
BglI	GCCNNNNNGGC	1 cut(s)	416
BisI	GCNGC	1 cut(s)	976
BlnI	CCTAGG	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	977
Bme1390I	CCNGG	2 cut(s)	822, 927
Bme18I	GGWCC	1 cut(s)	1103
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	1103
BmiI	GGNNCC	2 cut(s)	330, 913
BmrFI	CCNGG	2 cut(s)	822, 927
BmrI	ACTGGG	2 cut(s)	250, 305
BmsI	GCATC	4 cut(s)	70, 148, 274, 1055
BmuI	ACTGGG	2 cut(s)	250, 305
BplI	GAGNNNNNCTC	2 cut(s)	183, 215
Bpu10I	CCTNAGC	1 cut(s)	1052
Bsa29I	ATCGAT	1 cut(s)	1109
BsaJI	CCNNGG	2 cut(s)	119, 925
BsaWI	WCCGGW	1 cut(s)	452
Bsc4I	CCNNNNNNNGG	1 cut(s)	621
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	5 cut(s)	52, 133, 245, 311, 438
Bse21I	CCTNAGG	2 cut(s)	300, 780
BseBI	CCWGG	2 cut(s)	822, 927
BseCI	ATCGAT	1 cut(s)	1109
BseDI	CCNNGG	2 cut(s)	119, 925
BseGI	GGATG	2 cut(s)	250, 1046
BseLI	CCNNNNNNNGG	1 cut(s)	621
BseMII	CTCAG	8 cut(s)	194, 291, 380, 579, 753, 771, 916, 1066
BseNI	ACTGG	5 cut(s)	52, 133, 245, 311, 438
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	987
BshFI	GGCC	2 cut(s)	5, 419
BshNI	GGYRCC	1 cut(s)	328
BshTI	ACCGGT	1 cut(s)	452
BshVI	ATCGAT	1 cut(s)	1109
BsiHKAI	GWGCWC	2 cut(s)	309, 465
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	453
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	621
BsmAI	GTCTC	3 cut(s)	374, 489, 683
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	5, 419
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	309, 465
Bsp143I	GATC	8 cut(s)	369, 541, 556, 880, 954, 984, 1026, 1034
BspACI	CCGC	4 cut(s)	548, 615, 960, 1001
BspANI	GGCC	2 cut(s)	5, 419
BspCNI	CTCAG	8 cut(s)	193, 292, 379, 580, 754, 772, 915, 1065
BspDI	ATCGAT	1 cut(s)	1109
BspHI	TCATGA	2 cut(s)	573, 852
BspLI	GGNNCC	2 cut(s)	330, 913
BspPI	GGATC	4 cut(s)	564, 888, 1034, 1042
BspQI	GCTCTTC	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	328
BsrBI	CCGCTC	1 cut(s)	962
BsrFI	RCCGGY	1 cut(s)	452
BsrI	ACTGG	5 cut(s)	52, 133, 245, 311, 438
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	2 cut(s)	119, 925
BssMI	GATC	8 cut(s)	369, 541, 556, 880, 954, 984, 1026, 1034
BssT1I	CCWWGG	1 cut(s)	119
Bst2UI	CCWGG	2 cut(s)	822, 927
Bst4CI	ACNGT	3 cut(s)	493, 941, 1019
Bst6I	CTCTTC	1 cut(s)	522
BstDEI	CTNAG	8 cut(s)	180, 300, 366, 588, 762, 780, 902, 1052
BstF5I	GGATG	2 cut(s)	250, 1046
BstKTI	GATC	8 cut(s)	372, 544, 559, 883, 957, 987, 1029, 1037
BstMAI	GTCTC	3 cut(s)	374, 489, 683
BstMBI	GATC	8 cut(s)	369, 541, 556, 880, 954, 984, 1026, 1034
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 89, 416, 662
BstNI	CCWGG	2 cut(s)	822, 927
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	2 cut(s)	820, 925
BstV1I	GCAGC	1 cut(s)	987
BstX2I	RGATCY	2 cut(s)	556, 880
BstYI	RGATCY	2 cut(s)	556, 880
Bsu15I	ATCGAT	1 cut(s)	1109
Bsu36I	CCTNAGG	2 cut(s)	300, 780
BsuI	GTATCC	2 cut(s)	206, 222
BsuRI	GGCC	2 cut(s)	5, 419
BsuTUI	ATCGAT	1 cut(s)	1109
BtgZI	GCGATG	1 cut(s)	783
BtsCI	GGATG	2 cut(s)	250, 1046
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	8 cut(s)	99, 126, 445, 489, 585, 717, 910, 1024
CaiI	CAGNNNCTG	1 cut(s)	1023
CciI	TCATGA	2 cut(s)	573, 852
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	1 cut(s)	1103
ClaI	ATCGAT	1 cut(s)	1109
Csp6I	GTAC	2 cut(s)	447, 1090
CspAI	ACCGGT	1 cut(s)	452
CspCI	CAANNNNNGTGG	2 cut(s)	1052, 1087
CviQI	GTAC	2 cut(s)	447, 1090
DdeI	CTNAG	8 cut(s)	180, 300, 366, 588, 762, 780, 902, 1052
DpnI	GATC	8 cut(s)	371, 543, 558, 882, 956, 986, 1028, 1036
DpnII	GATC	8 cut(s)	369, 541, 556, 880, 954, 984, 1026, 1034
DraIII	CACNNNGTG	1 cut(s)	493
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
Eco130I	CCWWGG	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	871
Eco47I	GGWCC	1 cut(s)	1103
Eco57I	CTGAAG	2 cut(s)	227, 693
Eco81I	CCTNAGG	2 cut(s)	300, 780
Eco88I	CYCGRG	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	820, 925
EcoRV	GATATC	1 cut(s)	871
EcoT14I	CCWWGG	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	119
FaqI	GGGAC	1 cut(s)	377
FauI	CCCGC	1 cut(s)	541
Fnu4HI	GCNGC	1 cut(s)	976
FokI	GGATG	2 cut(s)	257, 1033
Fsp4HI	GCNGC	1 cut(s)	976
FspBI	CTAG	3 cut(s)	120, 686, 972
GluI	GCNGC	1 cut(s)	976
HaeIII	GGCC	2 cut(s)	5, 419
HapII	CCGG	1 cut(s)	453
HinfI	GANTC	7 cut(s)	364, 467, 566, 580, 768, 825, 1097
HpaII	CCGG	1 cut(s)	453
HphI	GGTGA	7 cut(s)	23, 67, 86, 182, 485, 598, 949
Hpy166II	GTNNAC	2 cut(s)	606, 1117
Hpy188I	TCNGA	6 cut(s)	153, 207, 369, 758, 809, 1031
Hpy188III	TCNNGA	8 cut(s)	539, 554, 574, 668, 779, 853, 874, 1024
Hpy8I	GTNNAC	2 cut(s)	606, 1117
HpyAV	CCTTC	4 cut(s)	52, 542, 871, 1069
HpyCH4III	ACNGT	3 cut(s)	493, 941, 1019
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	3 cut(s)	968, 998, 1046
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 89, 416, 662
HpyF3I	CTNAG	8 cut(s)	180, 300, 366, 588, 762, 780, 902, 1052
HpySE526I	ACGT	1 cut(s)	165
Kzo9I	GATC	8 cut(s)	369, 541, 556, 880, 954, 984, 1026, 1034
LguI	GCTCTTC	1 cut(s)	522
LmnI	GCTCC	3 cut(s)	304, 758, 823
Lsp1109I	GCAGC	1 cut(s)	987
LweI	GCATC	4 cut(s)	70, 148, 274, 1055
MaeI	CTAG	3 cut(s)	120, 686, 972
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	4 cut(s)	35, 236, 596, 635
MalI	GATC	8 cut(s)	371, 543, 558, 882, 956, 986, 1028, 1036
MbiI	CCGCTC	1 cut(s)	962
MboI	GATC	8 cut(s)	369, 541, 556, 880, 954, 984, 1026, 1034
MboII	GAAGA	6 cut(s)	370, 509, 589, 699, 730, 994
MflI	RGATCY	2 cut(s)	556, 880
MhlI	GDGCHC	2 cut(s)	309, 465
MluCI	AATT	2 cut(s)	627, 930
MlyI	GAGTC	3 cut(s)	358, 560, 1106
MmeI	TCCRAC	1 cut(s)	1087
MroXI	GAANNNNTTC	1 cut(s)	1127
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	2 cut(s)	129, 809
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	2 cut(s)	822, 927
MvaI	CCWGG	2 cut(s)	822, 927
MwoI	GCNNNNNNNGC	4 cut(s)	68, 89, 416, 662
NdeII	GATC	8 cut(s)	369, 541, 556, 880, 954, 984, 1026, 1034
NlaIV	GGNNCC	2 cut(s)	330, 913
NmuCI	GTSAC	2 cut(s)	35, 635
NspI	RCATGY	1 cut(s)	604
OliI	CACNNNNGTG	1 cut(s)	129
PagI	TCATGA	2 cut(s)	573, 852
PciI	ACATGT	1 cut(s)	600
PciSI	GCTCTTC	1 cut(s)	522
PdmI	GAANNNNTTC	1 cut(s)	1127
PfeI	GAWTC	4 cut(s)	467, 580, 768, 825
PfoI	TCCNGGA	1 cut(s)	820
PinAI	ACCGGT	1 cut(s)	452
PkrI	GCNGC	1 cut(s)	977
PleI	GAGTC	3 cut(s)	358, 560, 1105
PpsI	GAGTC	3 cut(s)	358, 560, 1105
PscI	ACATGT	1 cut(s)	600
Psp6I	CCWGG	2 cut(s)	820, 925
PspGI	CCWGG	2 cut(s)	820, 925
PspN4I	GGNNCC	2 cut(s)	330, 913
PspPI	GGNCC	1 cut(s)	1103
PstNI	CAGNNNCTG	1 cut(s)	1023
PsuI	RGATCY	2 cut(s)	556, 880
RsaI	GTAC	2 cut(s)	448, 1091
RsaNI	GTAC	2 cut(s)	447, 1090
RseI	CAYNNNNRTG	2 cut(s)	129, 809
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	976
Sau3AI	GATC	8 cut(s)	369, 541, 556, 880, 954, 984, 1026, 1034
Sau96I	GGNCC	1 cut(s)	1103
SchI	GAGTC	3 cut(s)	358, 560, 1106
ScrFI	CCNGG	2 cut(s)	822, 927
SduI	GDGCHC	2 cut(s)	309, 465
SfaNI	GCATC	4 cut(s)	70, 148, 274, 1055
SinI	GGWCC	1 cut(s)	1103
SmiMI	CAYNNNNRTG	2 cut(s)	129, 809
Sse9I	AATT	2 cut(s)	627, 930
SsiI	CCGC	4 cut(s)	548, 615, 960, 1001
SspMI	CTAG	3 cut(s)	120, 686, 972
StyD4I	CCNGG	2 cut(s)	820, 925
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	3 cut(s)	493, 941, 1019
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	4 cut(s)	219, 465, 867, 1109
TasI	AATT	2 cut(s)	627, 930
TfiI	GAWTC	4 cut(s)	467, 580, 768, 825
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	8 cut(s)	99, 133, 445, 496, 592, 717, 910, 1024
TseFI	GTSAC	2 cut(s)	35, 635
TseI	GCWGC	1 cut(s)	975
Tsp45I	GTSAC	2 cut(s)	35, 635
TspDTI	ATGAA	5 cut(s)	189, 590, 846, 869, 995
TspGWI	ACGGA	2 cut(s)	623, 761
TspRI	CASTG	8 cut(s)	99, 133, 445, 496, 592, 717, 910, 1024
VpaK11BI	GGWCC	1 cut(s)	1103
XceI	RCATGY	1 cut(s)	604
XmaJI	CCTAGG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	1127
XspI	CTAG	3 cut(s)	120, 686, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.