Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0016489

Physical Location & Seq

Genomic Coordinates Reverse (-)

756544 .. 759607

Gene Structure 3064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1001600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTGTTTCCTAGTATTGTTGGTCGCCCACGACACACAGGTGTCATGGTTGGTATGGGTCAGAAGGATGCCTACGTAGGTGATGAAGCACAGTCGAAAAGAGGTATCCTTACCTTGAAGTATCCCATTGAGCACGGTATAGTGAGCAACTGGGATGACATGGAGAAGATCTGGCATCATACTTTCTACAATGAACTTCGGGTTGCTCCTGAAGAGCACCCAGTTCTGCTCACAGAGGCTCCTCTCAATCCTAAGGCCAACAGAGAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTTGCCATCCAGGCTGTTCTCTCACTTTATGCCAGTGGTCGTACAACAGGTATTGTGCTGGACTCAGGTGATGGTGTGAGTCACACTGTCCCAATCTATGAAGGTTATGCCCTCCCTCATGCCATCCTTCGTCTGGACCTTGCTGGTCGTGACCTTACAGATGCTTTGATGAAGATTCTCACTGAAAGAGGGTACATGTTCACCACTACTGCTGAACGGGAAATTGTCCGTGATATGAAGGAGAAGCTTGCATATGTTGCCCTTGATTATGAGCAAGAACTTGAGACTGCCAAGAGCAGCTCGTCAGTTGAGAAGAACTATGAGCTTCCCGATGGCCAAGTCATCACAATTGGAGCTGAGAGATTCCGGTGCCCAGAAGTGCTCTTCCAACCATCTCTCATTGGAATGGAAGCTGCTGGCATTCATGAGACTACCTACAACTCTATCATGAAGTGTGATGTGGATATCAGAAAAGACCTATATGGAAACATCGTGCTCAGTGGTGGGTCAACTATGTTCCCTGGTATTGCAGACCGTATGAGCCGGGAGATCACTGCTCTTGCTCCAAGCAGCATGAAGATCAAGGTTGTAGCTCCACCAGAGAGAAAGTACAGTGTCTGGATTGGAGGGTCCATCCTTGCATCCCTCAGTACCTTCCAACAGATGTGGATTTCCAAGGGTGAGTACGACGAGTCAGGTCCATCCATTGTCCACAGGAAGTGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006950 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009611 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009845 GO:0009888 GO:0009941 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030312 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051301 GO:0055044 GO:0060560 GO:0070013 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090351 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

361

Amino Acids

39.99

Weight (kDa)

5.67

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	1 - 360	3.5e-141	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09810
fragaria_vesca	FvH4_1g23490
malus_domestica	MD01G1001600.v1.1
prunus_persica	Prupe.6G163400_v2.0.a1 Prupe.6G163400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118891
rosa_laevigata	RLG00000018431
rosa_multiflora	Rmu_sc0001653.1_g000037
rosa_roxburghii	Rroxscaffold_2G00124610
rosa_rugosa	Rorug02G0219400
rosa_samantha	Rh2BG288200 Rh2DG283400 Rh2DG302700
rosa_wichuraiana	Rw2G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	723
AcoI	YGGCCR	1 cut(s)	688
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	5 cut(s)	397, 548, 965, 1006, 1040
AfiI	CCNNNNNNNGG	1 cut(s)	487
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	2 cut(s)	157, 337
AjnI	CCWGG	3 cut(s)	35, 363, 874
AleI	CACNNNNGTG	1 cut(s)	78
AluBI	AGCT	6 cut(s)	601, 654, 679, 710, 767, 947
AluI	AGCT	6 cut(s)	601, 654, 679, 710, 767, 947
Alw21I	GWGCWC	4 cut(s)	174, 258, 738, 852
Alw26I	GTCTC	3 cut(s)	323, 632, 776
AlwNI	CAGNNNCTG	1 cut(s)	972
AoxI	GGCC	2 cut(s)	294, 688
ApeKI	GCWGC	3 cut(s)	651, 767, 924
Asp700I	GAANNNNTTC	1 cut(s)	1076
AspS9I	GGNCC	3 cut(s)	490, 984, 1052
AsuC2I	CCSGG	1 cut(s)	899
AsuHPI	GGTGA	6 cut(s)	16, 35, 131, 434, 547, 1046
AvaII	GGWCC	3 cut(s)	490, 984, 1052
AxyI	CCTNAGG	1 cut(s)	291
BaeGI	GKGCMC	1 cut(s)	728
BalI	TGGCCA	1 cut(s)	690
BanI	GGYRCC	1 cut(s)	723
BarI	GAAGNNNNNNTAC	2 cut(s)	95, 127
Bbv12I	GWGCWC	4 cut(s)	174, 258, 738, 852
BbvI	GCAGC	3 cut(s)	663, 754, 936
BccI	CCATC	7 cut(s)	368, 419, 485, 680, 754, 995, 1063
BciT130I	CCWGG	3 cut(s)	37, 365, 876
BciVI	GTATCC	2 cut(s)	155, 171
BcnI	CCSGG	1 cut(s)	899
BcoDI	GTCTC	3 cut(s)	323, 632, 776
BfaI	CTAG	1 cut(s)	51
BfuI	GTATCC	2 cut(s)	155, 171
BglI	GCCNNNNNGGC	1 cut(s)	365
BglII	AGATCT	1 cut(s)	207
BisI	GCNGC	3 cut(s)	652, 768, 925
BlsI	GCNGC	3 cut(s)	653, 769, 926
Bme1390I	CCNGG	4 cut(s)	37, 365, 876, 899
Bme18I	GGWCC	3 cut(s)	490, 984, 1052
BmgT120I	GGNCC	3 cut(s)	490, 984, 1052
BmiI	GGNNCC	3 cut(s)	279, 725, 985
BmrFI	CCNGG	4 cut(s)	37, 365, 876, 899
BmrI	ACTGGG	2 cut(s)	199, 254
BmsI	GCATC	5 cut(s)	19, 97, 223, 505, 1004
BmuI	ACTGGG	2 cut(s)	199, 254
BpuEI	CTTGAG	1 cut(s)	656
BpuMI	CCSGG	1 cut(s)	899
BsaAI	YACGTR	1 cut(s)	115
BsaI	GGTCTC	1 cut(s)	323
BsaJI	CCNNGG	4 cut(s)	35, 36, 874, 1029
BsaWI	WCCGGW	1 cut(s)	720
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	3 cut(s)	194, 260, 387
Bse21I	CCTNAGG	1 cut(s)	291
BseBI	CCWGG	3 cut(s)	37, 365, 876
BseDI	CCNNGG	4 cut(s)	35, 36, 874, 1029
BseGI	GGATG	7 cut(s)	112, 199, 360, 477, 987, 995, 1055
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMII	CTCAG	4 cut(s)	432, 702, 865, 1015
BseNI	ACTGG	3 cut(s)	194, 260, 387
BseRI	GAGGAG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	728
BseXI	GCAGC	3 cut(s)	663, 754, 936
BshFI	GGCC	2 cut(s)	296, 690
BshNI	GGYRCC	1 cut(s)	723
BsiHKAI	GWGCWC	4 cut(s)	174, 258, 738, 852
BsiSI	CCGG	2 cut(s)	721, 898
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	3 cut(s)	323, 632, 776
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	774
BsnI	GGCC	2 cut(s)	296, 690
Bso31I	GGTCTC	1 cut(s)	323
Bsp1286I	GDGCHC	5 cut(s)	174, 258, 728, 738, 852
Bsp143I	GATC	3 cut(s)	207, 903, 933
BspANI	GGCC	2 cut(s)	296, 690
BspCNI	CTCAG	4 cut(s)	431, 703, 864, 1014
BspHI	TCATGA	2 cut(s)	778, 801
BspLI	GGNNCC	3 cut(s)	279, 725, 985
BspQI	GCTCTTC	2 cut(s)	246, 743
BspT107I	GGYRCC	1 cut(s)	723
BspTNI	GGTCTC	1 cut(s)	323
BsrI	ACTGG	3 cut(s)	194, 260, 387
BssECI	CCNNGG	4 cut(s)	35, 36, 874, 1029
BssMI	GATC	3 cut(s)	207, 903, 933
BssT1I	CCWWGG	1 cut(s)	1029
Bst2UI	CCWGG	3 cut(s)	37, 365, 876
Bst4CI	ACNGT	5 cut(s)	132, 176, 442, 890, 968
Bst6I	CTCTTC	2 cut(s)	246, 743
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstBAI	YACGTR	1 cut(s)	115
BstC8I	GCNNGC	3 cut(s)	345, 603, 772
BstDEI	CTNAG	5 cut(s)	291, 418, 711, 851, 1001
BstF5I	GGATG	7 cut(s)	112, 199, 360, 477, 987, 995, 1055
BstKTI	GATC	3 cut(s)	210, 906, 936
BstMAI	GTCTC	3 cut(s)	323, 632, 776
BstMBI	GATC	3 cut(s)	207, 903, 933
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 38, 365, 611
BstNI	CCWGG	3 cut(s)	37, 365, 876
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	4 cut(s)	35, 363, 874, 897
BstSLI	GKGCMC	1 cut(s)	728
BstSNI	TACGTA	1 cut(s)	115
BstV1I	GCAGC	3 cut(s)	663, 754, 936
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
Bsu36I	CCTNAGG	1 cut(s)	291
BsuI	GTATCC	2 cut(s)	155, 171
BsuRI	GGCC	2 cut(s)	296, 690
BtsCI	GGATG	7 cut(s)	112, 199, 360, 477, 987, 995, 1055
BtsI	GCAGTG	1 cut(s)	906
BtsIMutI	CAGTG	6 cut(s)	394, 438, 534, 859, 906, 973
Cac8I	GCNNGC	3 cut(s)	345, 603, 772
CaiI	CAGNNNCTG	1 cut(s)	972
CciI	TCATGA	2 cut(s)	778, 801
Cfr13I	GGNCC	3 cut(s)	490, 984, 1052
Csp6I	GTAC	5 cut(s)	396, 547, 964, 1005, 1039
CspCI	CAANNNNNGTGG	2 cut(s)	1001, 1036
CviAII	CATG	9 cut(s)	85, 199, 322, 349, 473, 550, 779, 802, 928
CviQI	GTAC	5 cut(s)	396, 547, 964, 1005, 1039
DdeI	CTNAG	5 cut(s)	291, 418, 711, 851, 1001
DpnI	GATC	3 cut(s)	209, 905, 935
DpnII	GATC	3 cut(s)	207, 903, 933
EaeI	YGGCCR	1 cut(s)	688
Eam1104I	CTCTTC	2 cut(s)	246, 743
EarI	CTCTTC	2 cut(s)	246, 743
Eco105I	TACGTA	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	1029
Eco31I	GGTCTC	1 cut(s)	323
Eco32I	GATATC	1 cut(s)	820
Eco47I	GGWCC	3 cut(s)	490, 984, 1052
Eco57I	CTGAAG	1 cut(s)	270
Eco81I	CCTNAGG	1 cut(s)	291
EcoRII	CCWGG	3 cut(s)	35, 363, 874
EcoRV	GATATC	1 cut(s)	820
EcoT14I	CCWWGG	1 cut(s)	1029
ErhI	CCWWGG	1 cut(s)	1029
FaeI	CATG	9 cut(s)	88, 202, 325, 352, 476, 553, 782, 805, 931
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	9 cut(s)	84, 198, 321, 348, 472, 549, 778, 801, 927
FauNDI	CATATG	1 cut(s)	607
Fnu4HI	GCNGC	3 cut(s)	652, 768, 925
FokI	GGATG	7 cut(s)	119, 206, 347, 464, 974, 982, 1042
Fsp4HI	GCNGC	3 cut(s)	652, 768, 925
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	3 cut(s)	652, 768, 925
HaeIII	GGCC	2 cut(s)	296, 690
HapII	CCGG	2 cut(s)	721, 898
Hin1II	CATG	9 cut(s)	88, 202, 325, 352, 476, 553, 782, 805, 931
HincII	GTYRAC	1 cut(s)	864
HindII	GTYRAC	1 cut(s)	864
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	5 cut(s)	416, 433, 529, 717, 1046
HpaII	CCGG	2 cut(s)	721, 898
HphI	GGTGA	6 cut(s)	16, 35, 131, 434, 547, 1046
Hpy166II	GTNNAC	3 cut(s)	555, 864, 1066
Hpy188I	TCNGA	3 cut(s)	102, 824, 1082
Hpy188III	TCNNGA	7 cut(s)	248, 488, 503, 683, 779, 802, 973
Hpy8I	GTNNAC	3 cut(s)	555, 864, 1066
Hpy99I	CGWCG	1 cut(s)	1046
HpyAV	CCTTC	6 cut(s)	97, 343, 449, 491, 586, 1018
HpyCH4III	ACNGT	5 cut(s)	132, 176, 442, 890, 968
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	605, 884, 995
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 38, 365, 611
HpyF3I	CTNAG	5 cut(s)	291, 418, 711, 851, 1001
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	9 cut(s)	88, 202, 325, 352, 476, 553, 782, 805, 931
Kzo9I	GATC	3 cut(s)	207, 903, 933
LguI	GCTCTTC	2 cut(s)	246, 743
LmnI	GCTCC	6 cut(s)	37, 250, 283, 707, 922, 952
Lsp1109I	GCAGC	3 cut(s)	663, 754, 936
LweI	GCATC	5 cut(s)	19, 97, 223, 505, 1004
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	434, 503
MalI	GATC	3 cut(s)	209, 905, 935
MboI	GATC	3 cut(s)	207, 903, 933
MboII	GAAGA	6 cut(s)	217, 263, 538, 679, 730, 943
MfeI	CAATTG	1 cut(s)	702
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	5 cut(s)	174, 258, 728, 738, 852
MlsI	TGGCCA	1 cut(s)	690
MluCI	AATT	2 cut(s)	576, 702
MluNI	TGGCCA	1 cut(s)	690
MlyI	GAGTC	3 cut(s)	410, 442, 1055
MmeI	TCCRAC	2 cut(s)	766, 1036
MnlI	CCTC	8 cut(s)	134, 268, 291, 476, 480, 536, 974, 1010
Mox20I	TGGCCA	1 cut(s)	690
MroXI	GAANNNNTTC	1 cut(s)	1076
MscI	TGGCCA	1 cut(s)	690
MslI	CAYNNNNRTG	2 cut(s)	78, 758
Msp20I	TGGCCA	1 cut(s)	690
MspI	CCGG	2 cut(s)	721, 898
MspR9I	CCNGG	4 cut(s)	37, 365, 876, 899
MunI	CAATTG	1 cut(s)	702
Mva1269I	GAATGC	1 cut(s)	774
MvaI	CCWGG	3 cut(s)	37, 365, 876
MwoI	GCNNNNNNNGC	4 cut(s)	17, 38, 365, 611
NciI	CCSGG	1 cut(s)	899
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	3 cut(s)	207, 903, 933
NlaIII	CATG	9 cut(s)	88, 202, 325, 352, 476, 553, 782, 805, 931
NlaIV	GGNNCC	3 cut(s)	279, 725, 985
NmuCI	GTSAC	2 cut(s)	434, 503
NspI	RCATGY	1 cut(s)	553
OliI	CACNNNNGTG	1 cut(s)	78
PagI	TCATGA	2 cut(s)	778, 801
PasI	CCCWGGG	1 cut(s)	36
PciI	ACATGT	1 cut(s)	549
PciSI	GCTCTTC	2 cut(s)	246, 743
PctI	GAATGC	1 cut(s)	774
PdmI	GAANNNNTTC	1 cut(s)	1076
PfeI	GAWTC	2 cut(s)	529, 717
PkrI	GCNGC	3 cut(s)	653, 769, 926
PleI	GAGTC	3 cut(s)	410, 441, 1054
PpsI	GAGTC	3 cut(s)	410, 441, 1054
Ppu21I	YACGTR	1 cut(s)	115
PscI	ACATGT	1 cut(s)	549
Psp6I	CCWGG	3 cut(s)	35, 363, 874
PspGI	CCWGG	3 cut(s)	35, 363, 874
PspN4I	GGNNCC	3 cut(s)	279, 725, 985
PspPI	GGNCC	3 cut(s)	490, 984, 1052
PstNI	CAGNNNCTG	1 cut(s)	972
PsuI	RGATCY	1 cut(s)	207
RsaI	GTAC	5 cut(s)	397, 548, 965, 1006, 1040
RsaNI	GTAC	5 cut(s)	396, 547, 964, 1005, 1039
RseI	CAYNNNNRTG	2 cut(s)	78, 758
SapI	GCTCTTC	2 cut(s)	246, 743
SatI	GCNGC	3 cut(s)	652, 768, 925
Sau3AI	GATC	3 cut(s)	207, 903, 933
Sau96I	GGNCC	3 cut(s)	490, 984, 1052
SchI	GAGTC	3 cut(s)	410, 442, 1055
ScrFI	CCNGG	4 cut(s)	37, 365, 876, 899
SduI	GDGCHC	5 cut(s)	174, 258, 728, 738, 852
SfaNI	GCATC	5 cut(s)	19, 97, 223, 505, 1004
SinI	GGWCC	3 cut(s)	490, 984, 1052
SmiMI	CAYNNNNRTG	2 cut(s)	78, 758
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
SnaBI	TACGTA	1 cut(s)	115
Sse9I	AATT	2 cut(s)	576, 702
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	4 cut(s)	35, 363, 874, 897
StyI	CCWWGG	1 cut(s)	1029
TaaI	ACNGT	5 cut(s)	132, 176, 442, 890, 968
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	134
TasI	AATT	2 cut(s)	576, 702
TatI	WGTACW	1 cut(s)	963
TfiI	GAWTC	2 cut(s)	529, 717
TscAI	CASTG	6 cut(s)	394, 445, 541, 859, 913, 973
TseFI	GTSAC	2 cut(s)	434, 503
TseI	GCWGC	3 cut(s)	651, 767, 924
Tsp45I	GTSAC	2 cut(s)	434, 503
TspDTI	ATGAA	8 cut(s)	138, 246, 468, 539, 605, 767, 818, 944
TspGWI	ACGGA	1 cut(s)	572
TspRI	CASTG	6 cut(s)	394, 445, 541, 859, 913, 973
VpaK11BI	GGWCC	3 cut(s)	490, 984, 1052
XceI	RCATGY	1 cut(s)	553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XmnI	GAANNNNTTC	1 cut(s)	1076
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.