Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016489

Physical Location & Seq

Genomic Coordinates Forward (+)

15340989 .. 15343641

Gene Structure 2653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCTGATACCGAGGACATTCAGCCACTCGTGTGCGACAATGGAACTGGAATGGTGAAGGCTGGTTTTGCTGGTGATGATGCTCCCAGGGCTGTTTTTCCTAGTATTGTTGGTCGGCCACGACATACTGGTGTCATGGTTGGTATGGGGCAGAAAGATGCCTATGTGGGTGATGAGGCACAGTCTAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATAGTAAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACTTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTTCTTCTTACTGAGGCTCCTCTTAACCCCAAGGCCAACAGAGAAAAGATGACCCAGATCATGTTTGAGACCTTCAATGTGCCTGCTATGTACGTTGCCATCCAGGCCGTTCTCTCTCTGTATGCCAGTGGTCGTACAACTGGTATCGTGCTCGACTCTGGTGATGGTGTGAGTCACACCGTGCCTATCTATGAAGGTTATGCCCTCCCCCATGCCATCCTTCGTCTGGACCTTGCTGGACGTGACCTCACAGATTCTTTGATGAAGATTCTCACTGAAAGAGGGTACATGTTCACCACCACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTTGCATATGTTGCCCTTGACTACGAACAAGAACTTGAGACCTCCAAGAGCAGCTCCTCAGTTGAGAAGAACTATGAGCTTCCCGACGGCCAAGTCATCACGATTGGAGCTGAGAGATTCAGGTGCCCAGAAGTCCTCTTCCAACCATCTCTCATTGGAATGGAAGCTGCTGGCATTCACGAGACTACCTACAACTCCATTATGAAGTGTGATGTGGATATCAGAAAGGACTTGTATGGCAACATTGTGCTCAGTGGAGGTTCAACTATGTTCCCTGGTATTGCAGACAGGATGAGCAAGGAAATCACTGCTCTTGCTCCAAGCAGCATGAAGATTAAGGTCGTGGCTCCACCAGAGAGGAAGTACAGTGTCTGGATCGGAGGGTCCATTCTTGCTTCCCTCAGTACCTTCCAACAGATGTGGATTTCCAAGGGAGAGTACGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006950 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009611 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009845 GO:0009888 GO:0009941 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030312 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051301 GO:0055044 GO:0060560 GO:0070013 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090351 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

378

Amino Acids

41.76

Weight (kDa)

5.31

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	5 - 377	1.9e-146	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09810
fragaria_vesca	FvH4_1g23490
malus_domestica	MD01G1001600.v1.1
prunus_persica	Prupe.6G163400_v2.0.a1 Prupe.6G163400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118891
rosa_laevigata	RLG00000018431
rosa_multiflora	Rmu_sc0001653.1_g000037
rosa_roxburghii	Rroxscaffold_2G00124610
rosa_rugosa	Rorug02G0219400
rosa_samantha	Rh2BG288200 Rh2DG283400 Rh2DG302700
rosa_wichuraiana	Rw2G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	743
AccB1I	GGYRCC	1 cut(s)	774
AclWI	GGATC	1 cut(s)	1034
AcoI	YGGCCR	2 cut(s)	116, 739
AcuI	CTGAAG	1 cut(s)	321
AdeI	CACNNNGTG	1 cut(s)	493
AfaI	GTAC	6 cut(s)	404, 448, 599, 1016, 1057, 1091
AfiI	CCNNNNNNNGG	1 cut(s)	538
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	3 cut(s)	208, 388, 915
AjiI	CACGTC	1 cut(s)	554
AjnI	CCWGG	3 cut(s)	86, 414, 925
AleI	CACNNNNGTG	1 cut(s)	31
AluBI	AGCT	6 cut(s)	286, 652, 705, 730, 761, 818
AluI	AGCT	6 cut(s)	286, 652, 705, 730, 761, 818
Alw21I	GWGCWC	3 cut(s)	309, 465, 903
Alw26I	GTCTC	3 cut(s)	374, 683, 827
AlwI	GGATC	1 cut(s)	1034
AlwNI	CAGNNNCTG	1 cut(s)	1023
AoxI	GGCC	4 cut(s)	116, 345, 417, 739
ApeKI	GCWGC	3 cut(s)	702, 818, 975
Asp700I	GAANNNNTTC	1 cut(s)	1127
AspS9I	GGNCC	3 cut(s)	541, 1035, 1103
AsuHPI	GGTGA	5 cut(s)	67, 86, 182, 485, 598
AvaII	GGWCC	3 cut(s)	541, 1035, 1103
BaeGI	GKGCMC	1 cut(s)	779
BanI	GGYRCC	1 cut(s)	774
BauI	CACGAG	2 cut(s)	29, 830
Bbv12I	GWGCWC	3 cut(s)	309, 465, 903
BbvI	GCAGC	3 cut(s)	714, 805, 987
BccI	CCATC	5 cut(s)	419, 470, 536, 805, 1114
BceAI	ACGGC	2 cut(s)	404, 754
BciT130I	CCWGG	3 cut(s)	88, 416, 927
BcoDI	GTCTC	3 cut(s)	374, 683, 827
BfaI	CTAG	1 cut(s)	102
BglI	GCCNNNNNGGC	1 cut(s)	416
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	3 cut(s)	703, 819, 976
BlsI	GCNGC	3 cut(s)	704, 820, 977
Bme1390I	CCNGG	3 cut(s)	88, 416, 927
Bme18I	GGWCC	3 cut(s)	541, 1035, 1103
BmgBI	CACGTC	1 cut(s)	554
BmgT120I	GGNCC	3 cut(s)	541, 1035, 1103
BmiI	GGNNCC	4 cut(s)	330, 776, 999, 1036
BmrFI	CCNGG	3 cut(s)	88, 416, 927
BmrI	ACTGGG	2 cut(s)	250, 305
BmsI	GCATC	3 cut(s)	70, 148, 274
BmuI	ACTGGG	2 cut(s)	250, 305
BpuEI	CTTGAG	1 cut(s)	707
BsaI	GGTCTC	2 cut(s)	374, 683
BsaJI	CCNNGG	6 cut(s)	12, 86, 87, 342, 925, 1080
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	538
Bse1I	ACTGG	6 cut(s)	52, 133, 245, 311, 438, 457
BseBI	CCWGG	3 cut(s)	88, 416, 927
BseDI	CCNNGG	6 cut(s)	12, 86, 87, 342, 925, 1080
BseGI	GGATG	5 cut(s)	250, 411, 528, 948, 1106
BseLI	CCNNNNNNNGG	1 cut(s)	538
BseMII	CTCAG	5 cut(s)	315, 723, 753, 916, 1066
BseNI	ACTGG	6 cut(s)	52, 133, 245, 311, 438, 457
BseRI	GAGGAG	2 cut(s)	321, 697
BseSI	GKGCMC	1 cut(s)	779
BseXI	GCAGC	3 cut(s)	714, 805, 987
BshFI	GGCC	4 cut(s)	118, 347, 419, 741
BshNI	GGYRCC	1 cut(s)	774
BsiHKAI	GWGCWC	3 cut(s)	309, 465, 903
BslI	CCNNNNNNNGG	1 cut(s)	538
BsmAI	GTCTC	3 cut(s)	374, 683, 827
BsmI	GAATGC	1 cut(s)	825
BsnI	GGCC	4 cut(s)	118, 347, 419, 741
Bso31I	GGTCTC	2 cut(s)	374, 683
Bsp1286I	GDGCHC	4 cut(s)	309, 465, 779, 903
Bsp143I	GATC	3 cut(s)	258, 369, 1026
BspANI	GGCC	4 cut(s)	118, 347, 419, 741
BspCNI	CTCAG	5 cut(s)	316, 722, 754, 915, 1065
BspLI	GGNNCC	4 cut(s)	330, 776, 999, 1036
BspPI	GGATC	1 cut(s)	1034
BspQI	GCTCTTC	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	774
BspTNI	GGTCTC	2 cut(s)	374, 683
BsrI	ACTGG	6 cut(s)	52, 133, 245, 311, 438, 457
BssECI	CCNNGG	6 cut(s)	12, 86, 87, 342, 925, 1080
BssMI	GATC	3 cut(s)	258, 369, 1026
BssSI	CACGAG	2 cut(s)	29, 830
BssT1I	CCWWGG	2 cut(s)	342, 1080
Bst2BI	CACGAG	2 cut(s)	29, 830
Bst2UI	CCWGG	3 cut(s)	88, 416, 927
Bst4CI	ACNGT	3 cut(s)	183, 493, 1019
Bst6I	CTCTTC	2 cut(s)	297, 794
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstC8I	GCNNGC	3 cut(s)	396, 654, 823
BstDEI	CTNAG	5 cut(s)	324, 709, 762, 902, 1052
BstF5I	GGATG	5 cut(s)	250, 411, 528, 948, 1106
BstKTI	GATC	3 cut(s)	261, 372, 1029
BstMAI	GTCTC	3 cut(s)	374, 683, 827
BstMBI	GATC	3 cut(s)	258, 369, 1026
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 89, 416, 662
BstNI	CCWGG	3 cut(s)	88, 416, 927
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	3 cut(s)	86, 414, 925
BstSLI	GKGCMC	1 cut(s)	779
BstV1I	GCAGC	3 cut(s)	714, 805, 987
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BsuRI	GGCC	4 cut(s)	118, 347, 419, 741
BtrI	CACGTC	1 cut(s)	554
BtsCI	GGATG	5 cut(s)	250, 411, 528, 948, 1106
BtsI	GCAGTG	2 cut(s)	612, 957
BtsIMutI	CAGTG	6 cut(s)	445, 585, 612, 910, 957, 1024
Cac8I	GCNNGC	3 cut(s)	396, 654, 823
CaiI	CAGNNNCTG	1 cut(s)	1023
Cfr13I	GGNCC	3 cut(s)	541, 1035, 1103
Csp6I	GTAC	6 cut(s)	403, 447, 598, 1015, 1056, 1090
CspCI	CAANNNNNGTGG	2 cut(s)	1052, 1087
CviAII	CATG	8 cut(s)	136, 224, 250, 373, 524, 601, 640, 979
CviQI	GTAC	6 cut(s)	403, 447, 598, 1015, 1056, 1090
DdeI	CTNAG	5 cut(s)	324, 709, 762, 902, 1052
DpnI	GATC	3 cut(s)	260, 371, 1028
DpnII	GATC	3 cut(s)	258, 369, 1026
DraIII	CACNNNGTG	1 cut(s)	493
DrdI	GACNNNNNNGTC	1 cut(s)	743
DseDI	GACNNNNNNGTC	1 cut(s)	743
EaeI	YGGCCR	2 cut(s)	116, 739
Eam1104I	CTCTTC	2 cut(s)	297, 794
EarI	CTCTTC	2 cut(s)	297, 794
Eco130I	CCWWGG	2 cut(s)	342, 1080
Eco31I	GGTCTC	2 cut(s)	374, 683
Eco32I	GATATC	1 cut(s)	871
Eco47I	GGWCC	3 cut(s)	541, 1035, 1103
Eco57I	CTGAAG	1 cut(s)	321
EcoRII	CCWGG	3 cut(s)	86, 414, 925
EcoRV	GATATC	1 cut(s)	871
EcoT14I	CCWWGG	2 cut(s)	342, 1080
ErhI	CCWWGG	2 cut(s)	342, 1080
FaeI	CATG	8 cut(s)	139, 227, 253, 376, 527, 604, 643, 982
FatI	CATG	8 cut(s)	135, 223, 249, 372, 523, 600, 639, 978
FauNDI	CATATG	1 cut(s)	658
Fnu4HI	GCNGC	3 cut(s)	703, 819, 976
FokI	GGATG	5 cut(s)	257, 398, 515, 955, 1093
Fsp4HI	GCNGC	3 cut(s)	703, 819, 976
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	3 cut(s)	703, 819, 976
HaeIII	GGCC	4 cut(s)	118, 347, 419, 741
Hin1II	CATG	8 cut(s)	139, 227, 253, 376, 527, 604, 643, 982
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	6 cut(s)	467, 484, 566, 580, 768, 1097
HphI	GGTGA	5 cut(s)	67, 86, 182, 485, 598
Hpy166II	GTNNAC	2 cut(s)	606, 1117
Hpy188I	TCNGA	2 cut(s)	875, 1031
Hpy188III	TCNNGA	6 cut(s)	299, 539, 734, 751, 830, 1024
Hpy8I	GTNNAC	2 cut(s)	606, 1117
Hpy99I	CGWCG	1 cut(s)	740
HpyAV	CCTTC	6 cut(s)	52, 394, 500, 542, 637, 1069
HpyCH4III	ACNGT	3 cut(s)	183, 493, 1019
HpyCH4IV	ACGT	2 cut(s)	405, 553
HpyCH4V	TGCA	2 cut(s)	656, 935
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 89, 416, 662
HpyF3I	CTNAG	5 cut(s)	324, 709, 762, 902, 1052
HpySE526I	ACGT	2 cut(s)	405, 553
Hsp92II	CATG	8 cut(s)	139, 227, 253, 376, 527, 604, 643, 982
Kzo9I	GATC	3 cut(s)	258, 369, 1026
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	7 cut(s)	88, 301, 334, 710, 758, 973, 1003
Lsp1109I	GCAGC	3 cut(s)	714, 805, 987
LweI	GCATC	3 cut(s)	70, 148, 274
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	2 cut(s)	405, 553
MaeIII	GTNAC	3 cut(s)	485, 554, 635
MalI	GATC	3 cut(s)	260, 371, 1028
MboI	GATC	3 cut(s)	258, 369, 1026
MboII	GAAGA	7 cut(s)	268, 308, 314, 589, 730, 781, 994
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	4 cut(s)	309, 465, 779, 903
MluCI	AATT	1 cut(s)	627
MlyI	GAGTC	3 cut(s)	461, 493, 1106
MmeI	TCCRAC	2 cut(s)	817, 1087
MroXI	GAANNNNTTC	1 cut(s)	1127
MseI	TTAA	2 cut(s)	336, 987
MslI	CAYNNNNRTG	3 cut(s)	31, 129, 809
MspR9I	CCNGG	3 cut(s)	88, 416, 927
Mva1269I	GAATGC	1 cut(s)	825
MvaI	CCWGG	3 cut(s)	88, 416, 927
MwoI	GCNNNNNNNGC	4 cut(s)	68, 89, 416, 662
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	3 cut(s)	258, 369, 1026
NlaIII	CATG	8 cut(s)	139, 227, 253, 376, 527, 604, 643, 982
NlaIV	GGNNCC	4 cut(s)	330, 776, 999, 1036
NmuCI	GTSAC	3 cut(s)	485, 554, 635
NspI	RCATGY	1 cut(s)	604
OliI	CACNNNNGTG	1 cut(s)	31
PasI	CCCWGGG	1 cut(s)	87
PciI	ACATGT	1 cut(s)	600
PciSI	GCTCTTC	1 cut(s)	297
PctI	GAATGC	1 cut(s)	825
PdmI	GAANNNNTTC	1 cut(s)	1127
PfeI	GAWTC	3 cut(s)	566, 580, 768
PkrI	GCNGC	3 cut(s)	704, 820, 977
PleI	GAGTC	3 cut(s)	461, 492, 1105
PpsI	GAGTC	3 cut(s)	461, 492, 1105
PscI	ACATGT	1 cut(s)	600
Psp6I	CCWGG	3 cut(s)	86, 414, 925
PspGI	CCWGG	3 cut(s)	86, 414, 925
PspN4I	GGNNCC	4 cut(s)	330, 776, 999, 1036
PspPI	GGNCC	3 cut(s)	541, 1035, 1103
PstNI	CAGNNNCTG	1 cut(s)	1023
PsuI	RGATCY	1 cut(s)	258
RsaI	GTAC	6 cut(s)	404, 448, 599, 1016, 1057, 1091
RsaNI	GTAC	6 cut(s)	403, 447, 598, 1015, 1056, 1090
RseI	CAYNNNNRTG	3 cut(s)	31, 129, 809
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	336, 987
SatI	GCNGC	3 cut(s)	703, 819, 976
Sau3AI	GATC	3 cut(s)	258, 369, 1026
Sau96I	GGNCC	3 cut(s)	541, 1035, 1103
SchI	GAGTC	3 cut(s)	461, 493, 1106
ScrFI	CCNGG	3 cut(s)	88, 416, 927
SduI	GDGCHC	4 cut(s)	309, 465, 779, 903
SfaNI	GCATC	3 cut(s)	70, 148, 274
SinI	GGWCC	3 cut(s)	541, 1035, 1103
SmiMI	CAYNNNNRTG	3 cut(s)	31, 129, 809
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
Sse9I	AATT	1 cut(s)	627
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	3 cut(s)	86, 414, 925
StyI	CCWWGG	2 cut(s)	342, 1080
TaaI	ACNGT	3 cut(s)	183, 493, 1019
TaiI	ACGT	2 cut(s)	408, 556
TaqI	TCGA	1 cut(s)	465
TasI	AATT	1 cut(s)	627
TatI	WGTACW	1 cut(s)	1014
TfiI	GAWTC	3 cut(s)	566, 580, 768
Tru1I	TTAA	2 cut(s)	336, 987
Tru9I	TTAA	2 cut(s)	336, 987
TscAI	CASTG	6 cut(s)	445, 592, 619, 910, 964, 1024
TseFI	GTSAC	3 cut(s)	485, 554, 635
TseI	GCWGC	3 cut(s)	702, 818, 975
Tsp45I	GTSAC	3 cut(s)	485, 554, 635
TspDTI	ATGAA	5 cut(s)	519, 590, 656, 869, 995
TspGWI	ACGGA	1 cut(s)	623
TspRI	CASTG	6 cut(s)	445, 592, 619, 910, 964, 1024
VpaK11BI	GGWCC	3 cut(s)	541, 1035, 1103
XceI	RCATGY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XmnI	GAANNNNTTC	1 cut(s)	1127
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.